shortest.append(x)
# Insert the spines in perc
def calc_perc_pos(self, start, end, value):
"""Calc the percentual of the spine in the dends
lenght : 1 = value : x
x = value/lenght
"""
real_value = value - start
length = end -start
x = real_value/length
return x
if __name__ == "__main__":
l = Loader()
spines_pos = l.load('spines_pos.pickle')
plt.hist(spines_pos, bins=30, label='normal')
spinePer = spinePercentual()
spines_pos = spinePer.reduce_noise(spines_pos)
plt.hist(spines_pos, bins=30, label='noise red')
plt.legend()
print "Calculating the spines pos normalized to 1"
spinePer.convert_to_perc(spines_pos)
l.save(spinePer.mids, '.', 'mid_spines_per_branch.pickle')
l.save(spinePer.dists, '.', 'dist_spines_per_branch.pickle')
plt.show()
