"--structure_type",
action="store",
dest="structure_type",
required=True,
help="Type of structure (astral, pdb, denovo, other)",
)
parser.add_argument(
"--mammoth_table",
action="store",
dest="table_destination",
default="default",
help="The StructureMammoth table in hpf database to store mammoth results, default=StructureMammoth, 1186=yeast experiment",
)
args = parser.parse_args()
record = (
session.query(MammothRun)
.filter(MammothRun.supergroup_key == args.supergroup_key)
.filter(MammothRun.version == args.version)
.filter(MammothRun.group_key1 == args.group_key1)
.filter(MammothRun.group_key2 == args.group_key2)
.filter(MammothRun.status == "running")
.first()
)
store_scores(args.results_file, record, args.structure_type, args.version, args.table_destination)
record.status = "complete"
record.comment = "Mammoth run successful, imported results using store_scores.py"
session.flush()
help="The version of the MCM run. Simply an arbitrary integer to allow for keeping track of multiple MCM runs, if desired")
parser.add_argument("--supergroup_key", action="store", type=int, dest="supergroup_key", required=True,
help="The supergroup of the mammoth run. ")
parser.add_argument("--results_dir", action="store", dest="results_dir", required=True,
help="The mammoth results directory")
parser.add_argument("--structure_type", action="store", dest="structure_type", required=True,
help="Type of structure (astral, pdb, denovo, other)")
parser.add_argument("--mammoth_table", action="store", dest="table_destination", default="default",
help="The StructureMammoth table in hpf database to store mammoth results, default=StructureMammoth, 1186=yeast experiment")
args = parser.parse_args()
records = session.query(MammothRun).filter(MammothRun.supergroup_key==args.supergroup_key)\
.filter(MammothRun.version==args.version)\
.filter(MammothRun.status=='notuploaded')\
.all()
for mammoth_record in records:
results_file = os.path.join(args.results_dir,"mammoth_sg_{0}_g_{1}_{2}.results".format(mammoth_record.supergroup_key, mammoth_record.group_key1, mammoth_record.group_key2))
print "loading: " + results_file
ret = store_scores(results_file, mammoth_record, args.structure_type, args.version, args.table_destination)
mammoth_record.status = 'complete'
mammoth_record.comment = "Mammoth run successful, imported results using store_scores.py"
session.flush()
