def test_read_run_from_readouts(path_raw_data):
test_run = Run.create(origin="envision",
format="csv",
dir=True,
path=os.path.join(path_raw_data,
TEST_FOLDER_LUMINESCENCE_CSV))
assert type(test_run) == Run
assert len(test_run.plates) == 5
def test_read_run_from_config_insulin(path_run):
test_run = Run.create(origin="config",
path=os.path.join(path_run, TEST_RUN_CONFIG_INSULIN))
assert type(test_run) == Run
assert len(test_run.plates) == 5
test_plate = test_run.plates["150622_AmAmAs384_SanofiBatches1.csv"]
test_height = 16
assert test_plate.height == test_height
assert test_run.height == test_height
test_width = 24
assert test_plate.width == test_width
assert test_run.width == test_width
assert len(test_plate.read_outs) == 480
test_protocol = test_run.protocol()
assert type(test_protocol) == Protocol
test_plate_layout = test_run.plate_layout()
assert type(test_plate_layout) == PlateLayout
def test_read_run_from_config_insulin(path_run):
test_run = Run.create(origin="config",
path=os.path.join(path_run, TEST_RUN_CONFIG_INSULIN))
assert type(test_run) == Run
assert len(test_run.plates) == 5
test_plate = test_run.plates["150622_AmAmAs384_SanofiBatches1.csv"]
test_height = 16
assert test_plate.height == test_height
assert test_run.height == test_height
test_width = 24
assert test_plate.width == test_width
assert test_run.width == test_width
assert len(test_plate.read_outs) == 480
test_protocol = test_run.protocol()
assert type(test_protocol) == Protocol
test_plate_layout = test_run.plate_layout()
assert type(test_plate_layout) == PlateLayout
def test_do_qc_siRNA(path_run):
test_run = Run.create(origin="config",
path=os.path.join(path_run, TEST_RUN_CONFIG_SIRNA))
test_qc = test_run.qc()
def test_do_qc_insulin(path_run):
test_run = Run.create(origin="config",
path=os.path.join(path_run, TEST_RUN_CONFIG_INSULIN))
test_qc = test_run.qc()
def test_read_run_from_readouts(path_raw_data):
test_run = Run.create(origin="envision", format="csv", dir=True,
path=os.path.join(path_raw_data, TEST_FOLDER_LUMINESCENCE_CSV))
assert type(test_run) == Run
assert len(test_run.plates) == 5
def test_do_qc_siRNA(path_run):
test_run = Run.create(origin="config",
path=os.path.join(path_run, TEST_RUN_CONFIG_SIRNA))
test_qc = test_run.qc()
def test_do_qc_insulin(path_run):
test_run = Run.create(origin="config",
path=os.path.join(path_run, TEST_RUN_CONFIG_INSULIN))
test_qc = test_run.qc()