def run_cmd(self, cmd):
parser = cli.get_htsget_parser()
args = parser.parse_args(cmd.split())
with mock.patch("htsget.get") as mocked_get, \
mock.patch("sys.exit") as mocked_exit:
cli.run(args)
self.assertEqual(mocked_get.call_count, 1)
mocked_exit.assert_called_once_with(0)
return mocked_get.call_args
def run_cmd(self, cmd):
parser = cli.get_htsget_parser()
args = parser.parse_args(cmd.split())
with mock.patch("htsget.get") as mocked_get, \
mock.patch("sys.exit") as mocked_exit, \
mock.patch("logging.basicConfig") as mocked_log_config:
cli.run(args)
self.assertEqual(mocked_get.call_count, 1)
self.assertEqual(mocked_log_config.call_count, 1)
mocked_exit.assert_called_once_with(0)
return mocked_log_config.call_args[1]["level"]
def assert_exception_writes_error_message(self, exception, message):
parser = cli.get_htsget_parser()
args = parser.parse_args(["https://some.url"])
saved_stderr = sys.stderr
try:
with tempfile.TemporaryFile("w+") as tmp_stderr:
sys.stderr = tmp_stderr
with mock.patch("htsget.get") as mocked_get, \
mock.patch("sys.exit") as mocked_exit, \
mock.patch("logging.basicConfig"):
mocked_get.side_effect = exception
cli.run(args)
tmp_stderr.seek(0)
stderr = tmp_stderr.read().strip()
mocked_exit.assert_called_once_with(1)
finally:
sys.stderr = saved_stderr
self.assertTrue(stderr.endswith(message))
def test_transfer_with_cli_stdout(self):
test_instances = [
TestUrlInstance(url="/data1", data=b"data1"),
TestUrlInstance(url="/data2", data=b"data2")
]
self.httpd.test_instances = test_instances
saved = sys.stdout
sys.stdout = self.output_file
try:
cmd = [TestRequestHandler.ticket_url]
parser = cli.get_htsget_parser()
args = parser.parse_args(cmd)
with mock.patch("sys.exit") as mocked_exit:
cli.run(args)
mocked_exit.assert_called_once_with(0)
all_data = b"".join(test_instance.data for test_instance in test_instances)
self.output_file.seek(0)
self.assertEqual(self.output_file.read(), all_data)
finally:
sys.stdout = saved
def test_transfer_with_cli(self):
test_instances = [
TestUrlInstance(url="/data1", data=b"data1"),
TestUrlInstance(url="/data2", data=b"data2")
]
self.httpd.test_instances = test_instances
try:
fd, filename = tempfile.mkstemp()
os.close(fd)
cmd = [TestRequestHandler.ticket_url, "-O", filename]
parser = cli.get_htsget_parser()
args = parser.parse_args(cmd)
with mock.patch("sys.exit") as mocked_exit:
cli.run(args)
mocked_exit.assert_called_once_with(0)
all_data = b"".join(test_instance.data for test_instance in test_instances)
with open(filename, "rb") as f:
self.assertEqual(f.read(), all_data)
finally:
os.unlink(filename)
def parse_args(self, args):
parser = cli.get_htsget_parser()
return parser.parse_args(args)