# start by decompressing the header
if args.decompress:
header = headerdata.readline()
position_string = ""
reconstructed_gene = ""
reconstructed_quality = ""
print[x for x in decoding_table.keys() if len(x) == 5]
for pos in xrange(seqlen):
current_tree = decoding_table[position_string]
print current_tree
while True:
bit = huffman.get_bit(compressed)
if bit is None:
pos = -1
break
if bit == 1:
current_tree = current_tree[1]
else:
current_tree = current_tree[0]
if type(current_tree) is int:
break
if pos == -1:
break
def test_get_bit(self, byte, bit_pos):
"""get_bit(byte, bit) produces bit values"""
b = get_bit(byte, bit_pos)
self.assertTrue(isinstance(b, int))
self.assertTrue(0 <= b <= 1)
# start by decompressing the header if args.decompress: header = headerdata.readline() position_string = "" reconstructed_gene = "" reconstructed_quality = "" print [x for x in decoding_table.keys() if len(x) == 5] for pos in xrange(seqlen): current_tree = decoding_table[position_string] print current_tree while True: bit = huffman.get_bit(compressed) if bit is None: pos = -1 break if bit == 1: current_tree = current_tree[1] else: current_tree = current_tree[0] if type(current_tree) is int: break if pos == -1: break