def test_fastq_smallest_non_empty():
actual = minimal(fastq(size=1))
expected = "@ \nA\n+ \n@"
assert actual == expected
def test_fastq_smallest_example():
actual = minimal(fastq())
expected = "@ \n\n+ \n"
assert actual == expected
def test_fastq_minimal_protein_source():
actual = minimal(fastq(size=1, sequence_source=protein()))
expected = "@0\nA\n+0\n0"
assert actual == expected
def test_fastq_smallest_example():
actual = minimal(fastq())
expected = "@ \n\n+ \n"
assert actual == expected
def test_fastq_smallest_non_empty():
actual = minimal(fastq(size=1))
expected = "@ \nA\n+ \n@"
assert actual == expected
@given(fastq(size=10))
def test_fastq_size_over_one(fastq_string: str):
fields = fastq_string.split("\n")
header_begin = fields[0][0]
assert header_begin == "@"
header = fields[0][1:]
assert all(c not in ">@" for c in header)
sequence = fields[1]
assert all(c in "ACGT" for c in sequence)
seq_qual_sep = fields[2][0]
assert seq_qual_sep == "+"
quality = fields[-1]
def test_fastq_smallest_example():
actual = minimal(fastq())
expected = "@0\n\n+0\n"
assert actual == expected
def test_fastq_smallest_non_empty():
actual = minimal(fastq(size=1))
expected = "@0\nA\n+0\n0"
assert actual == expected
@given(fastq(size=10))
def test_fastq_size_over_one(fastq_string: str):
fields = fastq_string.split("\n")
header_begin = fields[0][0]
assert header_begin == "@"
seq_id = fields[0][1:]
seq_id_opt = fields[2][1:]
if seq_id:
assert all(33 <= ord(c) <= MAX_ASCII for c in seq_id)
assert all(33 <= ord(c) <= MAX_ASCII for c in seq_id_opt)
sequence = fields[1]
assert len(sequence) == 10
seq_qual_sep = fields[2][0]