def test_create_ephys_flags(self):
extract = self.local_session_path_3A.joinpath("extract_ephys.flag")
qc = self.local_session_path_3A.joinpath("raw_ephys_qc.flag")
spike_sorting0 = self.local_session_path_3A / "raw_ephys_data" / "probe00"
spike_sorting1 = self.local_session_path_3A / "raw_ephys_data" / "probe01"
spike_sorting0 = spike_sorting0.joinpath("spike_sorting.flag")
spike_sorting1 = spike_sorting1.joinpath("spike_sorting.flag")
misc.create_ephys_flags(self.local_session_path_3A)
self.assertTrue(extract.exists())
self.assertTrue(qc.exists())
self.assertTrue(spike_sorting0.exists())
self.assertTrue(spike_sorting1.exists())
# Test recreate
misc.create_ephys_flags(self.local_session_path_3A)
self.assertTrue(extract.exists())
self.assertTrue(qc.exists())
self.assertTrue(spike_sorting0.exists())
self.assertTrue(spike_sorting1.exists())
# Remove flags after test
extract.unlink()
qc.unlink()
spike_sorting0.unlink()
spike_sorting1.unlink()
# test removal
self.assertFalse(extract.exists())
self.assertFalse(qc.exists())
self.assertFalse(spike_sorting0.exists())
self.assertFalse(spike_sorting1.exists())
def test_create_ephys_flags(self):
extract = self.session_path_3B.joinpath('extract_ephys.flag')
qc = self.session_path_3B.joinpath('raw_ephys_qc.flag')
# Create some probe folders for test
raw_ephys = self.session_path_3B.joinpath('raw_ephys_data')
probe_dirs = [raw_ephys.joinpath(f'probe{i:02}') for i in range(3)]
[x.mkdir(exist_ok=True) for x in probe_dirs]
misc.create_ephys_flags(self.session_path_3B)
self.assertTrue(extract.exists())
self.assertTrue(qc.exists())
self.assertTrue(
all(x.joinpath('spike_sorting.flag').exists() for x in probe_dirs))
# Test recreate
misc.create_ephys_flags(self.session_path_3B)
self.assertTrue(extract.exists())
self.assertTrue(qc.exists())
self.assertTrue(
all(x.joinpath('spike_sorting.flag').exists() for x in probe_dirs))