def tasks_runner(subjects_path,
tasks_dict,
one=None,
dry=False,
count=5,
time_out=None,
**kwargs):
"""
Function to run a list of tasks (task dictionary from Alyx query) on a local server
:param subjects_path:
:param tasks_dict:
:param one:
:param dry:
:param count: maximum number of tasks to run
:param time_out: between each task, if time elapsed is greater than time out, returns (seconds)
:param kwargs:
:return: list of dataset dictionaries
"""
if one is None:
one = ONE()
import time
tstart = time.time()
c = 0
last_session = None
all_datasets = []
for tdict in tasks_dict:
# if the count is reached or if the time_out has been elapsed, break the loop and return
if c >= count or (time_out and time.time() - tstart > time_out):
break
# reconstruct the session local path. As many jobs belong to the same session
# cache the result
if last_session != tdict['session']:
ses = one.alyx.rest('sessions',
'list',
django=f"pk,{tdict['session']}")[0]
session_path = Path(subjects_path).joinpath(
Path(ses['subject'], ses['start_time'][:10],
str(ses['number']).zfill(3)))
last_session = tdict['session']
if dry:
print(session_path, tdict['name'])
else:
task, dsets = tasks.run_alyx_task(tdict=tdict,
session_path=session_path,
one=one,
**kwargs)
if dsets:
all_datasets.extend(dsets)
c += 1
return all_datasets
def tasks_runner(subjects_path,
tasks_dict,
one=None,
dry=False,
count=5,
**kwargs):
"""
Function to run a list of tasks (task dictionary from Alyx query) on a local server
:param subjects_path:
:param tasks_dict:
:param one:
:param dry:
:param kwargs:
:return: list of dataset dictionaries
"""
if one is None:
one = ONE()
c = 0
last_session = None
all_datasets = []
for tdict in tasks_dict:
if c >= count:
break
# reconstruct the session local path. As many jobs belong to the same session
# cache the result
if last_session != tdict['session']:
ses = one.alyx.rest('sessions',
'list',
django=f"pk,{tdict['session']}")[0]
session_path = Path(subjects_path).joinpath(
Path(ses['subject'], ses['start_time'][:10],
str(ses['number']).zfill(3)))
last_session = tdict['session']
if dry:
print(session_path, tdict['name'])
else:
task, dsets = tasks.run_alyx_task(tdict=tdict,
session_path=session_path,
one=one,
**kwargs)
if dsets:
all_datasets.extend(dsets)
c += 1
return all_datasets