def test_mark_project_barcode_check_off(self):
pr = ProjectAdaptor(**{'session_class': self.session_class})
pr.start_session()
pr.store_project_and_attribute_data(self.data)
pr.close_session()
mark_project_barcode_check_off(
project_igf_id='IGFP001_test1_24-1-18',
session_class=self.session_class) # no attribute record
pr.start_session()
attribute_check = pr.check_project_attributes(
project_igf_id='IGFP001_test1_24-1-18',
attribute_name='barcode_check')
self.assertTrue(attribute_check)
pr_attributes = pr.get_project_attributes(
project_igf_id='IGFP001_test1_24-1-18',
attribute_name='barcode_check')
for pr_attribute in pr_attributes.to_dict(orient='records'):
self.assertEqual(pr_attribute['attribute_value'], 'OFF')
pr_attributes = pr.get_project_attributes(
project_igf_id='IGFP002_test1_24-1-18',
attribute_name='barcode_check')
for pr_attribute in pr_attributes.to_dict(orient='records'):
self.assertEqual(pr_attribute['attribute_value'], 'ON')
pr.close_session()
mark_project_barcode_check_off(
project_igf_id='IGFP002_test1_24-1-18',
session_class=self.session_class) # barcode check ON
pr.start_session()
pr_attributes = pr.get_project_attributes(
project_igf_id='IGFP002_test1_24-1-18',
attribute_name='barcode_check')
for pr_attribute in pr_attributes.to_dict(orient='records'):
self.assertEqual(pr_attribute['attribute_value'], 'OFF')
pr_attributes = pr.get_project_attributes(
project_igf_id='IGFP003_test1_24-1-18',
attribute_name='barcode_check')
for pr_attribute in pr_attributes.to_dict(orient='records'):
self.assertEqual(pr_attribute['attribute_value'], 'OFF')
pr.close_session()
mark_project_barcode_check_off(
project_igf_id='IGFP003_test1_24-1-18',
session_class=self.session_class) # barcode check OFF
pr.start_session()
pr_attributes = pr.get_project_attributes(
project_igf_id='IGFP003_test1_24-1-18',
attribute_name='barcode_check')
for pr_attribute in pr_attributes.to_dict(orient='records'):
self.assertEqual(pr_attribute['attribute_value'], 'OFF')
pr.close_session()
def mark_project_barcode_check_off(project_igf_id,
session_class,
barcode_check_attribute='barcode_check',
barcode_check_val='OFF'):
'''
A utility method for marking project barcode check as off using the project_igf_id
:param project_igf_id: A project_igf_id string
:param session_class: A db session class object
:param barcode_check_attribute: A text keyword for barcode check attribute, default barcode_check
:param barcode_check_val: A text for barcode check attribute value, default is 'OFF'
'''
try:
db_connected = False
pr = ProjectAdaptor(**{'session_class': session_class})
pr.start_session()
db_connected = True
pr_attributes = pr.check_project_attributes(
project_igf_id=project_igf_id,
attribute_name=barcode_check_attribute
) # check for the existing project attribute
if pr_attributes: # if attribute present, then modify it
project = pr.fetch_project_records_igf_id(
project_igf_id=project_igf_id) # fetch project info
query=pr.session.\
query(Project_attribute).\
filter(Project_attribute.attribute_name==barcode_check_attribute).\
filter(Project_attribute.project_id==project.project_id).\
update({Project_attribute.attribute_value:barcode_check_val,},
synchronize_session=False) # create query for fetching attribute records and modify attribute records
else: # if project attribute is not present, store it
data = [{
'project_igf_id': project_igf_id,
'attribute_name': barcode_check_attribute,
'attribute_value': barcode_check_val
}] # create data structure for the attribute table
pr.store_project_attributes(
data, autosave=False
) # store data to attribute table without auto commit
pr.commit_session()
except:
if db_connected:
pr.rollback_session()
raise
finally:
if db_connected:
pr.close_session()
