def displayOrganisms(simple_organisms, n_organisms, n_generations):
picture = np.zeros((n_generations, n_organisms, 3), 'uint8')
# Normalise values into the range 0-255
min_values = np.min(simple_organisms, axis=0)
max_values = np.max(simple_organisms, axis=0)
scale = 255 / (max_values - min_values)
for i in range(len(min_values)):
simple_organisms[:, i] -= min_values[i]
simple_organisms[:, i] *= scale[i]
#Add row of zeros for red colour
zeros = np.zeros((len(simple_organisms), 1))
colours = np.hstack((zeros, simple_organisms))
organism = 0
for x in range(n_generations):
for y in range(n_organisms):
picture[x, y, :] = colours[organism, :]
organism += 1
from imageIO import saveSurface
saveSurface('evolution_pca.png', picture)
def displayOrganisms(simple_organisms, n_organisms, n_generations):
picture = np.zeros((n_generations, n_organisms, 3), 'uint8')
# Normalise values into the range 0-255
min_values = np.min(simple_organisms, axis=0)
max_values = np.max(simple_organisms, axis=0)
scale = 255 / (max_values - min_values)
for i in range(len(min_values)):
simple_organisms[:,i] -= min_values[i]
simple_organisms[:,i] *= scale[i]
#Add row of zeros for red colour
zeros = np.zeros((len(simple_organisms), 1))
colours = np.hstack((zeros, simple_organisms))
organism = 0
for x in range(n_generations):
for y in range(n_organisms):
picture[x, y, :] = colours[organism, :]
organism += 1
from imageIO import saveSurface
saveSurface('evolution_pca.png', picture)
def createImageOfProteinsPerGeneration(proteins_per_generation, filtered_proteins):
import numpy as np
width = len(proteins_per_generation)
height = len(filtered_proteins)
picture = np.zeros((width, height), 'uint64')
for generation in range(len(proteins_per_generation)):
for y, protein in enumerate(filtered_proteins):
if protein in proteins_per_generation[generation]:
picture[generation, y] = 255
from imageIO import saveSurface
saveSurface('test.png', picture)
def createImageOfProteinsPerGeneration(proteins_per_generation,
filtered_proteins):
import numpy as np
width = len(proteins_per_generation)
height = len(filtered_proteins)
picture = np.zeros((width, height), 'uint64')
for generation in range(len(proteins_per_generation)):
for y, protein in enumerate(filtered_proteins):
if protein in proteins_per_generation[generation]:
picture[generation, y] = 255
from imageIO import saveSurface
saveSurface('test.png', picture)