def action(name, args):
proteins = get_proteins()
kwargs = vars(args)
if 'func' in kwargs:
kwargs.pop('func')
if 'type' in kwargs:
kwargs.pop('type')
muts_import_manager.perform(name, proteins, **kwargs)
def load(args):
print('Importing %s mappings' % (args.restrict_to or 'all'))
proteins = get_proteins()
if args.restrict_to != 'aminoacid_refseq':
import_genome_proteome_mappings(proteins, bdb_dir=args.path)
if args.restrict_to != 'genome_proteome':
import_aminoacid_mutation_refseq_mappings(proteins,
bdb_dir=args.path)
def load(self, args):
print(f'Importing {args.restrict_to or "all"} mappings')
proteins = get_proteins()
if args.restrict_to != 'aminoacid_refseq':
import_genome_proteome_mappings(proteins, bdb_dir=args.path)
if args.restrict_to != 'genome_proteome':
import_aminoacid_mutation_refseq_mappings(proteins,
bdb_dir=args.path)