def test_get_belief_package2():
st1 = Phosphorylation(None, Agent('A1'), evidence=[ev1])
st2 = Phosphorylation(None, Agent('A'), evidence=[ev2])
st1.supported_by = [st2]
st2.supports = [st1]
package = _get_belief_package(st1)
assert len(package) == 1
assert package[0].statement_key == st1.matches_key()
assert len(package[0].evidences) == 1, package[0][1]
assert package[0].evidences[0].source_api == 'reach'
package = _get_belief_package(st2)
assert len(package) == 2, package
assert package[0].statement_key == st1.matches_key()
assert package[1].statement_key == st2.matches_key()
def test_get_belief_package2():
st1 = Phosphorylation(None, Agent('A1'), evidence=[ev1])
st2 = Phosphorylation(None, Agent('A'), evidence=[ev2])
st1.supported_by = [st2]
st2.supports = [st1]
package = _get_belief_package(st1)
assert len(package) == 1
assert package[0].statement_key == st1.matches_key()
assert len(package[0].evidences) == 1, package[0][1]
assert package[0].evidences[0].source_api == 'reach'
package = _get_belief_package(st2)
assert len(package) == 2, package
assert package[0].statement_key == st1.matches_key()
assert package[1].statement_key == st2.matches_key()
def test_get_belief_package3():
st1 = Phosphorylation(Agent('B'), Agent('A1'), evidence=[ev1])
st2 = Phosphorylation(None, Agent('A1'), evidence=[ev2])
st3 = Phosphorylation(None, Agent('A'), evidence=[ev4])
st1.supported_by = [st2, st3]
st2.supported_by = [st3]
st2.supports = [st1]
st3.supports = [st1, st2]
package = _get_belief_package(st1)
assert len(package) == 1
package = _get_belief_package(st2)
assert len(package) == 2
package = _get_belief_package(st3)
assert len(package) == 3
sources = [pkg.evidences[0].source_api for pkg in package]
assert sources == ['reach', 'trips', 'biopax']
def test_get_belief_package1():
st1 = Phosphorylation(None, Agent('a'))
st1.belief = 0.53
package = _get_belief_package(st1)
assert(len(package) == 1)
assert(package[0][0] == 0.53)
assert(package[0][1] == st1.matches_key())
def test_get_belief_package3():
st1 = Phosphorylation(Agent('B'), Agent('A1'), evidence=[ev1])
st2 = Phosphorylation(None, Agent('A1'), evidence=[ev2])
st3 = Phosphorylation(None, Agent('A'), evidence=[ev4])
st1.supported_by = [st2, st3]
st2.supported_by = [st3]
st2.supports = [st1]
st3.supports = [st1, st2]
package = _get_belief_package(st1)
assert len(package) == 1
package = _get_belief_package(st2)
assert len(package) == 2
package = _get_belief_package(st3)
assert len(package) == 3
sources = [pkg.evidences[0].source_api for pkg in package]
assert sources == ['reach', 'trips', 'biopax']
def test_get_belief_package2():
st1 = Phosphorylation(None, Agent('A1'))
st2 = Phosphorylation(None, Agent('A'))
st1.supported_by = [st2]
st2.supports = [st1]
st1.belief = 0.8
st2.belief = 0.6
package = _get_belief_package(st1)
assert(len(package) == 1)
assert(package[0][0] == 0.8)
assert(package[0][1] == st1.matches_key())
package = _get_belief_package(st2)
assert(len(package) == 2)
assert(package[0][0] == 0.8)
assert(package[0][1] == st1.matches_key())
assert(package[1][0] == 0.6)
assert(package[1][1] == st2.matches_key())
def test_get_belief_package3():
st1 = Phosphorylation(Agent('B'), Agent('A1'))
st2 = Phosphorylation(None, Agent('A1'))
st3 = Phosphorylation(None, Agent('A'))
st1.supported_by = [st2, st3]
st2.supported_by = [st3]
st2.supports = [st1]
st3.supports = [st1, st2]
st1.belief = 0.8
st2.belief = 0.6
st3.belief = 0.7
package = _get_belief_package(st1)
assert(len(package) == 1)
assert(set([p[0] for p in package]) == set([0.8]))
package = _get_belief_package(st2)
assert(len(package) == 2)
assert(set([p[0] for p in package]) == set([0.6, 0.8]))
package = _get_belief_package(st3)
assert(len(package) == 3)
assert(set([p[0] for p in package]) == set([0.6, 0.7, 0.8]))
def test_get_belief_package1():
st1 = Phosphorylation(None, Agent('a'), evidence=[ev1])
package = _get_belief_package(st1)
assert len(package) == 1
assert package[0][0] == st1.matches_key()
def test_get_belief_package1():
st1 = Phosphorylation(None, Agent('a'), evidence=[ev1])
package = _get_belief_package(st1)
assert len(package) == 1
assert package[0][0] == st1.matches_key()
