def map_ensembl_ids(ensembl_ids):
"""Return references based on a list of Ensembl IDs."""
refs = []
for ensembl_id in ensembl_ids:
ref = {'ENSEMBL': ensembl_id}
ensembl_id = ensembl_id.split('.', maxsplit=1)[0]
hgnc_id = hgnc_client.get_hgnc_from_ensembl(ensembl_id)
if not hgnc_id:
logger.warning('Could not get HGNC ID for ENSEMBL ID %s' %
ensembl_id)
continue
hgnc_ref = _refs_from_hgnc_id(hgnc_id)
if hgnc_ref is None:
continue
ref.update(hgnc_ref)
refs.append(ref)
return refs
def test_ensembl_hgnc():
ensembl_id = 'ENSG00000006071'
hgnc_id = hgnc_client.get_hgnc_from_ensembl(ensembl_id)
assert hgnc_id == '59', hgnc_id
assert hgnc_client.get_ensembl_id(hgnc_id) == ensembl_id