def handle_user_type(self):
if self.user_type == TERMINAL:
self.user = TermUser(getpass.getuser(), self)
self.user.tell("Welcome to Indra, " + str(self.user) + "!")
elif self.user_type == TEST:
self.user = TestUser(getpass.getuser(), self)
elif self.user_type == API:
self.user = APIUser(getpass.getuser(), self)
def get(self, model_id):
"""
Get the list of properties (parameters) for a model.
"""
props = \
get_props_for_current_execution(model_id, indra_dir)
APIUser("Dennis", None, execution_key=props[EXEC_KEY].get("val"))
return props
def from_json(self, serial_obj):
super().from_json(serial_obj)
self.pop_hist = PopHist(serial_pops=serial_obj["pop_hist"])
self.plot_title = serial_obj["plot_title"]
nm = serial_obj["user"]["name"]
msg = serial_obj["user"]["user_msgs"]
self.user = APIUser(nm, self, execution_key=self.execution_key)
self.user.tell(msg)
self.name = serial_obj["name"]
self.switches = serial_obj["switches"]
self.womb = serial_obj["womb"]
self.num_members_ever = serial_obj["num_members_ever"]
def from_json(self, serial_obj):
super().from_json(serial_obj)
self.pop_hist = PopHist(serial_pops=serial_obj["pop_hist"])
self.plot_title = serial_obj["plot_title"]
nm = serial_obj["user"]["name"]
msg = serial_obj["user"]["user_msgs"]
self.user = APIUser(nm, self)
self.user.tell(msg)
self.name = serial_obj["name"]
self.switches = serial_obj["switches"]
self.womb = serial_obj["womb"]
# We need to look up these funcs in registry.
self.census_func = serial_obj["census_func"]
self.line_data_func = serial_obj["data_func"]
self.num_members_ever = serial_obj["num_members_ever"]
# Indra API server
import os
from indra.user import APIUser
from flask import Flask
from flask_restplus import Resource, Api, fields
from flask_cors import CORS
import json
ERROR = "Error:"
app = Flask(__name__)
CORS(app)
api = Api(app)
user = APIUser("Dennis", None)
indra_dir = os.getenv("INDRA_HOME", "/home/indrasnet/indras_net")
def err_return(s):
return {ERROR: s}
def load_models():
model_file = indra_dir + "/models/models.json"
with open(model_file) as file:
return json.loads(file.read())["models_database"]
@api.route('/hello')
class HelloWorld(Resource):
from indra.user import APIUser
from registry.execution_registry import execution_registry, \
EXEC_KEY, CLI_EXEC_KEY
app = Flask(__name__)
CORS(app)
api = Api(app)
# the hard-coded dir is needed for Python Anywhere, until
# we figure out how to get the env var set there.
indra_dir = os.getenv("INDRA_HOME", "/home/indrasnet/indras_net")
'''
We can remove this after all models have been ported to new execution
registry system
'''
APIUser("Dennis", None, execution_key=CLI_EXEC_KEY)
@api.route('/test',
endpoint="test",
doc={"description": "An endpoint just to mess around with."})
class Test(Resource):
def get(self):
"""
A trivial endpoint just to demo adding something.
"""
return {'hello': 'susanna'}
@api.route('/hello')
class HelloWorld(Resource):