def extract_journal_info(obj, eng):
"""Extract the journal information from ``pubinfo_freetext``.
Runs ``extract_journal_reference`` on the ``pubinfo_freetext`` key of each
``publication_info``, if it exists, and uses the extracted information to
populate the other keys.
Args:
obj: a workflow object.
eng: a workflow engine.
Returns:
None
"""
if not obj.data.get('publication_info'):
return
for publication_info in obj.data['publication_info']:
try:
with local_refextract_kbs_path() as kbs_path:
extracted_publication_info = extract_journal_reference(
publication_info['pubinfo_freetext'],
override_kbs_files=kbs_path,
)
if not extracted_publication_info:
continue
if extracted_publication_info.get('title'):
publication_info['journal_title'] = extracted_publication_info[
'title']
if extracted_publication_info.get('volume'):
publication_info[
'journal_volume'] = extracted_publication_info['volume']
if extracted_publication_info.get('page'):
page_start, page_end, artid = split_page_artid(
extracted_publication_info['page'])
if page_start:
publication_info['page_start'] = page_start
if page_end:
publication_info['page_end'] = page_end
if artid:
publication_info['artid'] = artid
if extracted_publication_info.get('year'):
year = maybe_int(extracted_publication_info['year'])
if year:
publication_info['year'] = year
except KeyError:
pass
obj.data['publication_info'] = convert_old_publication_info_to_new(
obj.data['publication_info'])
def refextract_url():
"""Run refextract on a URL."""
with local_refextract_kbs_path() as kbs_path:
extracted_references = extract_references_from_url(
request.json['url'],
override_kbs_files=kbs_path,
reference_format=u'{title},{volume},{page}')
references = map_refextract_to_schema(extracted_references)
return jsonify(references)
def extract_references_from_text(text, source=None, custom_kbs_file=None):
"""Extract references from text and return in INSPIRE format."""
with local_refextract_kbs_path() as kbs_path:
extracted_references = extract_references_from_string(
text,
override_kbs_files=kbs_path,
reference_format=u'{title},{volume},{page}',
)
return map_refextract_to_schema(extracted_references, source=source)
def extract_references_from_text(text, source=None, custom_kbs_file=None):
"""Extract references from text and return in INSPIRE format."""
with local_refextract_kbs_path() as kbs_path:
extracted_references = extract_references_from_string(
text,
override_kbs_files=kbs_path,
reference_format=u'{title},{volume},{page}',
)
return map_refextract_to_schema(extracted_references, source=source)
def refextract_text():
"""Run refextract on a piece of text."""
with local_refextract_kbs_path() as kbs_path:
extracted_references = extract_references_from_string(
request.json['text'],
override_kbs_files=kbs_path,
reference_format=u'{title},{volume},{page}')
references = map_refextract_to_schema(extracted_references)
references = match_references(references)
return jsonify(references)
def refextract_text():
"""Run refextract on a piece of text."""
with local_refextract_kbs_path() as kbs_path:
extracted_references = extract_references_from_string(
request.json['text'],
override_kbs_files=kbs_path,
reference_format=u'{title},{volume},{page}'
)
references = map_refextract_to_schema(extracted_references)
return jsonify(references)
def refextract_url():
"""Run refextract on a URL."""
with local_refextract_kbs_path() as kbs_path:
extracted_references = extract_references_from_url(
request.json['url'],
override_kbs_files=kbs_path,
reference_format=u'{title},{volume},{page}'
)
references = map_refextract_to_schema(extracted_references)
references = match_references(references)
return jsonify(references)
def extract_journal_info(obj, eng):
"""Extract the journal information from ``pubinfo_freetext``.
Runs ``extract_journal_reference`` on the ``pubinfo_freetext`` key of each
``publication_info``, if it exists, and uses the extracted information to
populate the other keys.
Args:
obj: a workflow object.
eng: a workflow engine.
Returns:
None
"""
if not obj.data.get('publication_info'):
return
for publication_info in obj.data['publication_info']:
try:
with local_refextract_kbs_path() as kbs_path:
extracted_publication_info = extract_journal_reference(
publication_info['pubinfo_freetext'],
override_kbs_files=kbs_path,
)
if not extracted_publication_info:
continue
if extracted_publication_info.get('title'):
publication_info['journal_title'] = extracted_publication_info['title']
if extracted_publication_info.get('volume'):
publication_info['journal_volume'] = extracted_publication_info['volume']
if extracted_publication_info.get('page'):
page_start, page_end, artid = split_page_artid(extracted_publication_info['page'])
if page_start:
publication_info['page_start'] = page_start
if page_end:
publication_info['page_end'] = page_end
if artid:
publication_info['artid'] = artid
if extracted_publication_info.get('year'):
year = maybe_int(extracted_publication_info['year'])
if year:
publication_info['year'] = year
except KeyError:
pass
obj.data['publication_info'] = convert_old_publication_info_to_new(obj.data['publication_info'])
