def __init__(self, config):
self.callback_url = config['callback_url']
self.shared_folder = config['scratch']
#self.shared_folder = "/kb/module/work"
self.ws_url = config['workspace-url']
self.dfu = DataFileUtil(self.callback_url)
self.gsu = GenomeSearchUtil(self.callback_url)
self.wsc = Workspace(self.ws_url)
def __init__(self, config):
self.ws_url = config['workspace-url']
self.callback_url = config['SDK_CALLBACK_URL']
self.token = config['KB_AUTH_TOKEN']
self.shock_url = config['shock-url']
self.scratch = config['scratch']
self.dfu = DataFileUtil(self.callback_url)
self.gsu = GenomeSearchUtil(self.callback_url)
self.ws = Workspace(self.ws_url, token=self.token)
def __init__(self, config):
self.ws_url = config["workspace-url"]
self.callback_url = config['SDK_CALLBACK_URL']
self.token = config['KB_AUTH_TOKEN']
self.shock_url = config['shock-url']
self.dfu = DataFileUtil(self.callback_url)
self.rau = ReadsAlignmentUtils(self.callback_url)
self.deu = DifferentialExpressionUtils(self.callback_url,
service_ver='dev')
self.gsu = GenomeSearchUtil(self.callback_url)
self.ws = Workspace(self.ws_url, token=self.token)
self.scratch = config['scratch']
def __init__(self, config):
self.callback_url = config['callback_url']
self.shared_folder = config['scratch']
self.ws_url = config['workspace-url']
self.GFF_dir = os.path.join(self.shared_folder, 'GFF')
if not os.path.isdir(self.GFF_dir):
os.mkdir(self.GFF_dir)
self.dfu = DataFileUtil(self.callback_url)
self.gsu = GenomeSearchUtil(self.callback_url)
self.wsc = Workspace(self.ws_url)
def __init__(self, config):
self.cfg = config
self.scratch = config['scratch']
self.gsu = GenomeSearchUtil(os.environ['SDK_CALLBACK_URL'])
self.dfu = DataFileUtil(os.environ['SDK_CALLBACK_URL'])
self.ws = Workspace(config["workspace-url"])