def get_streamConfigs(self):
raw_config = StreamConfiguration(
stream_name='raw', parameter_dictionary_name='ctd_raw_param_dict')
parsed_config = StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='ctd_parsed_param_dict')
return raw_config, parsed_config
def create_instrument_agent(self, instrument_model_id):
raw_config = StreamConfiguration(stream_name='raw', parameter_dictionary_name='raw')
parsed_config = StreamConfiguration(stream_name='parsed', parameter_dictionary_name='ctd_parsed_param_dict')
# Create InstrumentAgent
instagent_obj = IonObject(RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri=DRV_URI_GOOD,
stream_configurations = [raw_config, parsed_config])
instrument_agent_id = self.instrument_management.create_instrument_agent(instagent_obj)
self.addCleanup(self.instrument_management.delete_instrument_agent, instrument_agent_id)
self.instrument_management.assign_instrument_model_to_instrument_agent(instrument_model_id, instrument_agent_id)
return instrument_agent_id
def create_instrument_data_products(self, instrument_device_id):
raw_config = StreamConfiguration(stream_name='raw', parameter_dictionary_name='raw')
parsed_config = StreamConfiguration(stream_name='parsed', parameter_dictionary_name='ctd_parsed_param_dict')
raw_dp_id = self.create_data_product('raw', param_dict_name='raw', stream_configuration=raw_config)
self.data_product_management.activate_data_product_persistence(raw_dp_id)
self.addCleanup(self.data_product_management.suspend_data_product_persistence, raw_dp_id)
self.data_acquisition_management.assign_data_product(input_resource_id=instrument_device_id, data_product_id=raw_dp_id)
parsed_dp_id = self.create_data_product('parsed', param_dict_name='ctd_parsed_param_dict', stream_configuration=parsed_config)
self.data_product_management.activate_data_product_persistence(parsed_dp_id)
self.addCleanup(self.data_product_management.suspend_data_product_persistence, parsed_dp_id)
self.data_acquisition_management.assign_data_product(input_resource_id=instrument_device_id, data_product_id=parsed_dp_id)
return raw_dp_id, parsed_dp_id
def get_streamConfigs(self):
raw_config = StreamConfiguration(
stream_name='raw',
parameter_dictionary_name='ctd_raw_param_dict',
records_per_granule=2,
granule_publish_rate=5)
parsed_config = StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='ctd_parsed_param_dict',
records_per_granule=2,
granule_publish_rate=5)
return raw_config, parsed_config
def _make_instrument_agent_structure(agent_config=None):
if None is agent_config: agent_config = {}
# instance creation
instrument_agent_instance_obj = any_old(RT.InstrumentAgentInstance, {"startup_config": inst_startup_config})
instrument_agent_instance_obj.agent_config = agent_config
instrument_agent_instance_id = self.IMS.create_instrument_agent_instance(instrument_agent_instance_obj)
# agent creation
raw_config = StreamConfiguration(stream_name='raw', parameter_dictionary_name='ctd_raw_param_dict', records_per_granule=2, granule_publish_rate=5 )
instrument_agent_obj = any_old(RT.InstrumentAgent, {"stream_configurations":[raw_config]})
instrument_agent_id = self.IMS.create_instrument_agent(instrument_agent_obj)
# device creation
instrument_device_id = self.IMS.create_instrument_device(any_old(RT.InstrumentDevice))
# data product creation
dp_obj = any_old(RT.DataProduct, {"temporal_domain":tdom, "spatial_domain": sdom})
dp_id = self.DP.create_data_product(data_product=dp_obj, stream_definition_id=raw_stream_def_id)
self.DAMS.assign_data_product(input_resource_id=instrument_device_id, data_product_id=dp_id)
self.DP.activate_data_product_persistence(data_product_id=dp_id)
# assignments
self.RR2.assign_instrument_agent_instance_to_instrument_device(instrument_agent_instance_id, instrument_device_id)
self.RR2.assign_instrument_agent_to_instrument_agent_instance(instrument_agent_id, instrument_agent_instance_id)
self.RR2.assign_instrument_device_to_org_with_has_resource(instrument_agent_instance_id, org_id)
return instrument_agent_instance_id, instrument_agent_id, instrument_device_id
def _make_platform_agent_structure(agent_config=None):
if None is agent_config: agent_config = {}
# instance creation
platform_agent_instance_obj = any_old(
RT.PlatformAgentInstance, {
'driver_config': {
'foo': 'bar'
},
'alerts': generic_alerts_config
})
platform_agent_instance_obj.agent_config = agent_config
platform_agent_instance_id = self.IMS.create_platform_agent_instance(
platform_agent_instance_obj)
# agent creation
raw_config = StreamConfiguration(
stream_name='raw',
parameter_dictionary_name='ctd_raw_param_dict')
platform_agent_obj = any_old(
RT.PlatformAgent, {"stream_configurations": [raw_config]})
platform_agent_id = self.IMS.create_platform_agent(
platform_agent_obj)
# device creation
platform_device_id = self.IMS.create_platform_device(
any_old(RT.PlatformDevice))
# data product creation
dp_obj = any_old(RT.DataProduct, {
"temporal_domain": tdom,
"spatial_domain": sdom
})
dp_id = self.DP.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
self.DAMS.assign_data_product(input_resource_id=platform_device_id,
data_product_id=dp_id)
self.DP.activate_data_product_persistence(data_product_id=dp_id)
self.addCleanup(self.DP.suspend_data_product_persistence, dp_id)
# assignments
self.RR2.assign_platform_agent_instance_to_platform_device_with_has_agent_instance(
platform_agent_instance_id, platform_device_id)
self.RR2.assign_platform_agent_to_platform_agent_instance_with_has_agent_definition(
platform_agent_id, platform_agent_instance_id)
self.RR2.assign_platform_device_to_org_with_has_resource(
platform_agent_instance_id, org_id)
return platform_agent_instance_id, platform_agent_id, platform_device_id
def create_data_product(self,name, stream_def_id='', param_dict_name='', pdict_id='', stream_configuration=None):
if not (stream_def_id or param_dict_name or pdict_id):
raise AssertionError('Attempted to create a Data Product without a parameter dictionary')
dp = DataProduct(name=name)
stream_def_id = stream_def_id or self.create_stream_definition('%s stream def' % name,
parameter_dictionary_id=pdict_id or self.RR2.find_resource_by_name(RT.ParameterDictionary,
param_dict_name, id_only=True))
stream_config = stream_configuration or StreamConfiguration(stream_name='parsed_ctd', stream_type=StreamConfigurationType.PARSED)
data_product_id = self.data_product_management.create_data_product(dp, stream_definition_id=stream_def_id, default_stream_configuration=stream_config)
self.addCleanup(self.data_product_management.delete_data_product, data_product_id)
return data_product_id
def _make_platform_agent_structure(agent_config=None):
if None is agent_config: agent_config = {}
# instance creation
platform_agent_instance_obj = any_old(RT.PlatformAgentInstance)
platform_agent_instance_obj.agent_config = agent_config
platform_agent_instance_id = self.IMS.create_platform_agent_instance(
platform_agent_instance_obj)
# agent creation
raw_config = StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='platform_eng_parsed',
records_per_granule=2,
granule_publish_rate=5)
platform_agent_obj = any_old(
RT.PlatformAgent, {"stream_configurations": [raw_config]})
platform_agent_id = self.IMS.create_platform_agent(
platform_agent_obj)
# device creation
platform_device_id = self.IMS.create_platform_device(
any_old(RT.PlatformDevice))
# data product creation
dp_obj = any_old(RT.DataProduct, {
"temporal_domain": tdom,
"spatial_domain": sdom
})
# dp_id = self.DP.create_data_product(data_product=dp_obj, stream_definition_id=raw_stream_def_id)
dp_id = self.DP.create_data_product(
data_product=dp_obj,
stream_definition_id=self.parsed_stream_def_id)
self.DAMS.assign_data_product(input_resource_id=platform_device_id,
data_product_id=dp_id)
self.DP.activate_data_product_persistence(data_product_id=dp_id)
# assignments
self.RR2.assign_platform_agent_instance_to_platform_device(
platform_agent_instance_id, platform_device_id)
self.RR2.assign_platform_agent_to_platform_agent_instance(
platform_agent_id, platform_agent_instance_id)
self.RR2.assign_platform_device_to_org_with_has_resource(
platform_agent_instance_id, org_id)
return platform_agent_instance_id, platform_agent_id, platform_device_id
def get_streamConfigs(self):
#
# This method is an adaptation of get_streamConfigs in
# test_driver_egg.py
#
return [
StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='platform_eng_parsed',
records_per_granule=2,
granule_publish_rate=5)
# TODO enable something like the following when also
# incorporating "raw" data:
#,
#StreamConfiguration(stream_name='raw',
# parameter_dictionary_name='ctd_raw_param_dict',
# records_per_granule=2,
# granule_publish_rate=5)
]
def test_get_provenance(self):
#create a deployment with metadata and an initial site and device
instrument_site_obj = IonObject(RT.InstrumentSite,
name='InstrumentSite1',
description='test instrument site')
instrument_site_id = self.omsclient.create_instrument_site(instrument_site_obj, "")
log.debug( 'test_get_provenance: new instrument_site_id id = %s ', str(instrument_site_id))
# Create InstrumentModel
instModel_obj = IonObject(RT.InstrumentModel,
name='SBE37IMModel',
description="SBE37IMModel" )
try:
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
except BadRequest as ex:
self.fail("failed to create new InstrumentModel: %s" %ex)
log.debug( 'test_get_provenance: new InstrumentModel id = %s ', str(instModel_id))
self.omsclient.assign_instrument_model_to_instrument_site(instModel_id, instrument_site_id)
# Create InstrumentAgent
parsed_config = StreamConfiguration(stream_name='parsed', parameter_dictionary_name='ctd_parsed_param_dict', records_per_granule=2, granule_publish_rate=5 )
instAgent_obj = IonObject(RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri="http://sddevrepo.oceanobservatories.org/releases/seabird_sbe37smb_ooicore-0.0.1-py2.7.egg",
stream_configurations = [parsed_config] )
try:
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
except BadRequest as ex:
self.fail("failed to create new InstrumentAgent: %s" %ex)
log.debug( 'test_get_provenance:new InstrumentAgent id = %s', instAgent_id)
self.imsclient.assign_instrument_model_to_instrument_agent(instModel_id, instAgent_id)
# Create InstrumentDevice
log.debug('test_get_provenance: Create instrument resource to represent the SBE37 (SA Req: L4-CI-SA-RQ-241) ')
instDevice_obj = IonObject(RT.InstrumentDevice, name='SBE37IMDevice', description="SBE37IMDevice", serial_number="12345" )
try:
instDevice_id = self.imsclient.create_instrument_device(instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(instModel_id, instDevice_id)
except BadRequest as ex:
self.fail("failed to create new InstrumentDevice: %s" %ex)
log.debug("test_get_provenance: new InstrumentDevice id = %s (SA Req: L4-CI-SA-RQ-241) ", instDevice_id)
#-------------------------------
# Create CTD Parsed data product
#-------------------------------
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
parsed_stream_def_id = self.pubsubclient.create_stream_definition(name='parsed', parameter_dictionary_id=pdict_id)
log.debug( 'test_get_provenance:Creating new CDM data product with a stream definition')
dp_obj = IonObject(RT.DataProduct,
name='the parsed data',
description='ctd stream test',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_parsed_data_product = self.dpmsclient.create_data_product(data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
log.debug( 'new dp_id = %s', ctd_parsed_data_product)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_parsed_data_product)
self.dpmsclient.activate_data_product_persistence(data_product_id=ctd_parsed_data_product)
#-------------------------------
# create a data product for the site to pass the OMS check.... we need to remove this check
#-------------------------------
dp_obj = IonObject(RT.DataProduct,
name='DP1',
description='some new dp',
temporal_domain = tdom,
spatial_domain = sdom)
log_data_product_id = self.dpmsclient.create_data_product(dp_obj, parsed_stream_def_id)
self.omsclient.create_site_data_product(instrument_site_id, log_data_product_id)
#-------------------------------
# Deploy instrument device to instrument site
#-------------------------------
deployment_obj = IonObject(RT.Deployment,
name='TestDeployment',
description='some new deployment')
deployment_id = self.omsclient.create_deployment(deployment_obj)
self.omsclient.deploy_instrument_site(instrument_site_id, deployment_id)
self.imsclient.deploy_instrument_device(instDevice_id, deployment_id)
log.debug("test_create_deployment: created deployment id: %s ", str(deployment_id) )
self.omsclient.activate_deployment(deployment_id)
inst_device_objs, _ = self.rrclient.find_objects(subject=instrument_site_id, predicate=PRED.hasDevice, object_type=RT.InstrumetDevice, id_only=False)
log.debug("test_create_deployment: deployed device: %s ", str(inst_device_objs[0]) )
#-------------------------------
# Create the agent instance
#-------------------------------
port_agent_config = {
'device_addr': CFG.device.sbe37.host,
'device_port': CFG.device.sbe37.port,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': CFG.device.sbe37.port_agent_cmd_port,
'data_port': CFG.device.sbe37.port_agent_data_port,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance, name='SBE37IMAgentInstance',
description="SBE37IMAgentInstance",
port_agent_config = port_agent_config)
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(instAgentInstance_obj, instAgent_id, instDevice_id)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Data Process Definition
#-------------------------------
log.debug("TestDataProductProvenance: create data process definition ctd_L0_all")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
try:
ctd_L0_all_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except BadRequest as ex:
self.fail("failed to create new ctd_L0_all data process definition: %s" %ex)
#-------------------------------
# L1 Conductivity: Data Process Definition
#-------------------------------
log.debug("TestDataProductProvenance: create data process definition CTDL1ConductivityTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L1_conductivity',
description='create the L1 conductivity data product',
module='ion.processes.data.transforms.ctd.ctd_L1_conductivity',
class_name='CTDL1ConductivityTransform')
try:
ctd_L1_conductivity_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except BadRequest as ex:
self.fail("failed to create new CTDL1ConductivityTransform data process definition: %s" %ex)
#-------------------------------
# L1 Pressure: Data Process Definition
#-------------------------------
log.debug("TestDataProductProvenance: create data process definition CTDL1PressureTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L1_pressure',
description='create the L1 pressure data product',
module='ion.processes.data.transforms.ctd.ctd_L1_pressure',
class_name='CTDL1PressureTransform')
try:
ctd_L1_pressure_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except BadRequest as ex:
self.fail("failed to create new CTDL1PressureTransform data process definition: %s" %ex)
#-------------------------------
# L1 Temperature: Data Process Definition
#-------------------------------
log.debug("TestDataProductProvenance: create data process definition CTDL1TemperatureTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L1_temperature',
description='create the L1 temperature data product',
module='ion.processes.data.transforms.ctd.ctd_L1_temperature',
class_name='CTDL1TemperatureTransform')
try:
ctd_L1_temperature_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except BadRequest as ex:
self.fail("failed to create new CTDL1TemperatureTransform data process definition: %s" %ex)
#-------------------------------
# L2 Salinity: Data Process Definition
#-------------------------------
log.debug("TestDataProductProvenance: create data process definition SalinityTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L2_salinity',
description='create the L1 temperature data product',
module='ion.processes.data.transforms.ctd.ctd_L2_salinity',
class_name='SalinityTransform')
try:
ctd_L2_salinity_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except BadRequest as ex:
self.fail("failed to create new SalinityTransform data process definition: %s" %ex)
#-------------------------------
# L2 Density: Data Process Definition
#-------------------------------
log.debug("TestDataProductProvenance: create data process definition DensityTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L2_density',
description='create the L1 temperature data product',
module='ion.processes.data.transforms.ctd.ctd_L2_density',
class_name='DensityTransform')
try:
ctd_L2_density_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except BadRequest as ex:
self.fail("failed to create new DensityTransform data process definition: %s" %ex)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Output Data Products
#-------------------------------
outgoing_stream_l0_conductivity_id = self.pubsubclient.create_stream_definition(name='L0_Conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_conductivity_id, ctd_L0_all_dprocdef_id, binding='conductivity' )
outgoing_stream_l0_pressure_id = self.pubsubclient.create_stream_definition(name='L0_Pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_pressure_id, ctd_L0_all_dprocdef_id, binding='pressure' )
outgoing_stream_l0_temperature_id = self.pubsubclient.create_stream_definition(name='L0_Temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_temperature_id, ctd_L0_all_dprocdef_id, binding='temperature' )
self.output_products={}
log.debug("TestDataProductProvenance: create output data product L0 conductivity")
ctd_l0_conductivity_output_dp_obj = IonObject( RT.DataProduct,
name='L0_Conductivity',
description='transform output conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_conductivity_output_dp_id = self.dpmsclient.create_data_product(ctd_l0_conductivity_output_dp_obj,
outgoing_stream_l0_conductivity_id)
self.output_products['conductivity'] = ctd_l0_conductivity_output_dp_id
log.debug("TestDataProductProvenance: create output data product L0 pressure")
ctd_l0_pressure_output_dp_obj = IonObject( RT.DataProduct,
name='L0_Pressure',
description='transform output pressure',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_pressure_output_dp_id = self.dpmsclient.create_data_product(ctd_l0_pressure_output_dp_obj,
outgoing_stream_l0_pressure_id)
self.output_products['pressure'] = ctd_l0_pressure_output_dp_id
log.debug("TestDataProductProvenance: create output data product L0 temperature")
ctd_l0_temperature_output_dp_obj = IonObject( RT.DataProduct,
name='L0_Temperature',
description='transform output temperature',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_temperature_output_dp_id = self.dpmsclient.create_data_product(ctd_l0_temperature_output_dp_obj,
outgoing_stream_l0_temperature_id)
self.output_products['temperature'] = ctd_l0_temperature_output_dp_id
#-------------------------------
# L1 Conductivity - Temperature - Pressure: Output Data Products
#-------------------------------
outgoing_stream_l1_conductivity_id = self.pubsubclient.create_stream_definition(name='L1_conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l1_conductivity_id, ctd_L1_conductivity_dprocdef_id, binding='conductivity' )
outgoing_stream_l1_pressure_id = self.pubsubclient.create_stream_definition(name='L1_Pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l1_pressure_id, ctd_L1_pressure_dprocdef_id, binding='pressure' )
outgoing_stream_l1_temperature_id = self.pubsubclient.create_stream_definition(name='L1_Temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l1_temperature_id, ctd_L1_temperature_dprocdef_id, binding='temperature' )
log.debug("TestDataProductProvenance: create output data product L1 conductivity")
ctd_l1_conductivity_output_dp_obj = IonObject(RT.DataProduct,
name='L1_Conductivity',
description='transform output L1 conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l1_conductivity_output_dp_id = self.dpmsclient.create_data_product(ctd_l1_conductivity_output_dp_obj,
outgoing_stream_l1_conductivity_id)
log.debug("TestDataProductProvenance: create output data product L1 pressure")
ctd_l1_pressure_output_dp_obj = IonObject( RT.DataProduct,
name='L1_Pressure',
description='transform output L1 pressure',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l1_pressure_output_dp_id = self.dpmsclient.create_data_product(ctd_l1_pressure_output_dp_obj,
outgoing_stream_l1_pressure_id)
log.debug("TestDataProductProvenance: create output data product L1 temperature")
ctd_l1_temperature_output_dp_obj = IonObject( RT.DataProduct,
name='L1_Temperature',
description='transform output L1 temperature',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l1_temperature_output_dp_id = self.dpmsclient.create_data_product(ctd_l1_temperature_output_dp_obj,
outgoing_stream_l1_temperature_id)
#-------------------------------
# L2 Salinity - Density: Output Data Products
#-------------------------------
outgoing_stream_l2_salinity_id = self.pubsubclient.create_stream_definition(name='L2_salinity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l2_salinity_id, ctd_L2_salinity_dprocdef_id, binding='salinity' )
outgoing_stream_l2_density_id = self.pubsubclient.create_stream_definition(name='L2_Density', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l2_density_id, ctd_L2_density_dprocdef_id, binding='density' )
log.debug("TestDataProductProvenance: create output data product L2 Salinity")
ctd_l2_salinity_output_dp_obj = IonObject( RT.DataProduct,
name='L2_Salinity',
description='transform output L2 salinity',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l2_salinity_output_dp_id = self.dpmsclient.create_data_product(ctd_l2_salinity_output_dp_obj,
outgoing_stream_l2_salinity_id)
log.debug("TestDataProductProvenance: create output data product L2 Density")
# ctd_l2_density_output_dp_obj = IonObject( RT.DataProduct,
# name='L2_Density',
# description='transform output pressure',
# temporal_domain = tdom,
# spatial_domain = sdom)
#
# ctd_l2_density_output_dp_id = self.dpmsclient.create_data_product(ctd_l2_density_output_dp_obj,
# outgoing_stream_l2_density_id,
# parameter_dictionary)
contactInfo = ContactInformation()
contactInfo.individual_names_given = "Bill"
contactInfo.individual_name_family = "Smith"
contactInfo.street_address = "111 First St"
contactInfo.city = "San Diego"
contactInfo.email = "*****@*****.**"
contactInfo.phones = ["858-555-6666"]
contactInfo.country = "USA"
contactInfo.postal_code = "92123"
ctd_l2_density_output_dp_obj = IonObject( RT.DataProduct,
name='L2_Density',
description='transform output pressure',
contacts = [contactInfo],
iso_topic_category = "my_iso_topic_category_here",
quality_control_level = "1",
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l2_density_output_dp_id = self.dpmsclient.create_data_product(ctd_l2_density_output_dp_obj,
outgoing_stream_l2_density_id)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Create the data process
#-------------------------------
log.debug("TestDataProductProvenance: create L0 all data_process start")
try:
ctd_l0_all_data_process_id = self.dataprocessclient.create_data_process(ctd_L0_all_dprocdef_id, [ctd_parsed_data_product], self.output_products)
#activate only this data process just for coverage
self.dataprocessclient.activate_data_process(ctd_l0_all_data_process_id)
except BadRequest as ex:
self.fail("failed to create new data process: %s" %ex)
contents = "this is the lookup table contents, replace with a file..."
att = IonObject(RT.Attachment, name='deviceLookupTable', content=base64.encodestring(contents), keywords=['DataProcessInput'], attachment_type=AttachmentType.ASCII)
deviceAttachment = self.rrclient.create_attachment(ctd_l0_all_data_process_id, att)
log.info( 'test_createTransformsThenActivateInstrument: InstrumentDevice attachment id = %s', deviceAttachment)
log.debug("TestDataProductProvenance: create L0 all data_process return")
#-------------------------------
# L1 Conductivity: Create the data process
#-------------------------------
log.debug("TestDataProductProvenance: create L1 Conductivity data_process start")
try:
l1_conductivity_data_process_id = self.dataprocessclient.create_data_process(ctd_L1_conductivity_dprocdef_id, [ctd_l0_conductivity_output_dp_id], {'conductivity':ctd_l1_conductivity_output_dp_id})
self.dataprocessclient.activate_data_process(l1_conductivity_data_process_id)
except BadRequest as ex:
self.fail("failed to create new data process: %s" %ex)
#-------------------------------
# L1 Pressure: Create the data process
#-------------------------------
log.debug("TestDataProductProvenance: create L1_Pressure data_process start")
try:
l1_pressure_data_process_id = self.dataprocessclient.create_data_process(ctd_L1_pressure_dprocdef_id, [ctd_l0_pressure_output_dp_id], {'pressure':ctd_l1_pressure_output_dp_id})
self.dataprocessclient.activate_data_process(l1_pressure_data_process_id)
except BadRequest as ex:
self.fail("failed to create new data process: %s" %ex)
#-------------------------------
# L1 Temperature: Create the data process
#-------------------------------
log.debug("TestDataProductProvenance: create L1_Pressure data_process start")
try:
l1_temperature_all_data_process_id = self.dataprocessclient.create_data_process(ctd_L1_temperature_dprocdef_id, [ctd_l0_temperature_output_dp_id], {'temperature':ctd_l1_temperature_output_dp_id})
self.dataprocessclient.activate_data_process(l1_temperature_all_data_process_id)
except BadRequest as ex:
self.fail("failed to create new data process: %s" %ex)
#-------------------------------
# L2 Salinity: Create the data process
#-------------------------------
log.debug("TestDataProductProvenance: create L2_salinity data_process start")
try:
l2_salinity_all_data_process_id = self.dataprocessclient.create_data_process(ctd_L2_salinity_dprocdef_id, [ctd_l1_conductivity_output_dp_id, ctd_l1_pressure_output_dp_id, ctd_l1_temperature_output_dp_id], {'salinity':ctd_l2_salinity_output_dp_id})
self.dataprocessclient.activate_data_process(l2_salinity_all_data_process_id)
except BadRequest as ex:
self.fail("failed to create new data process: %s" %ex)
#-------------------------------
# L2 Density: Create the data process
#-------------------------------
log.debug("TestDataProductProvenance: create L2_Density data_process start")
try:
l2_density_all_data_process_id = self.dataprocessclient.create_data_process(ctd_L2_density_dprocdef_id, [ctd_l1_conductivity_output_dp_id, ctd_l1_pressure_output_dp_id, ctd_l1_temperature_output_dp_id], {'density':ctd_l2_density_output_dp_id})
self.dataprocessclient.activate_data_process(l2_density_all_data_process_id)
except BadRequest as ex:
self.fail("failed to create new data process: %s" %ex)
#-------------------------------
# Launch InstrumentAgentInstance, connect to the resource agent client
#-------------------------------
self.imsclient.start_instrument_agent_instance(instrument_agent_instance_id=instAgentInstance_id)
inst_agent_instance_obj= self.imsclient.read_instrument_agent_instance(instAgentInstance_id)
print 'TestDataProductProvenance: Instrument agent instance obj: = ', inst_agent_instance_obj
# Start a resource agent client to talk with the instrument agent.
# self._ia_client = ResourceAgentClient('iaclient', name=inst_agent_instance_obj.agent_process_id, process=FakeProcess())
# print 'activate_instrument: got ia client %s', self._ia_client
# log.debug(" test_createTransformsThenActivateInstrument:: got ia client %s", str(self._ia_client))
#-------------------------------
# Deactivate InstrumentAgentInstance
#-------------------------------
self.imsclient.stop_instrument_agent_instance(instrument_agent_instance_id=instAgentInstance_id)
self.dataprocessclient.deactivate_data_process(l2_density_all_data_process_id)
self.dataprocessclient.deactivate_data_process(l2_salinity_all_data_process_id)
self.dataprocessclient.deactivate_data_process(l1_temperature_all_data_process_id)
self.dataprocessclient.deactivate_data_process(l1_pressure_data_process_id)
self.dataprocessclient.deactivate_data_process(l1_conductivity_data_process_id)
self.dataprocessclient.deactivate_data_process(ctd_l0_all_data_process_id)
#-------------------------------
# Retrieve the provenance info for the ctd density data product
#-------------------------------
provenance_dict = self.dpmsclient.get_data_product_provenance(ctd_l2_density_output_dp_id)
log.debug("TestDataProductProvenance: provenance_dict %s", str(provenance_dict))
#validate that products are represented
self.assertTrue (provenance_dict[str(ctd_l1_conductivity_output_dp_id)])
self.assertTrue (provenance_dict[str(ctd_l0_conductivity_output_dp_id)])
self.assertTrue (provenance_dict[str(ctd_l2_density_output_dp_id)])
self.assertTrue (provenance_dict[str(ctd_l1_temperature_output_dp_id)])
self.assertTrue (provenance_dict[str(ctd_l0_temperature_output_dp_id)])
density_dict = (provenance_dict[str(ctd_l2_density_output_dp_id)])
self.assertEquals(density_dict['producer'], [l2_density_all_data_process_id])
#-------------------------------
# Retrieve the extended resource for this data product
#-------------------------------
extended_product = self.dpmsclient.get_data_product_extension(ctd_l2_density_output_dp_id)
self.assertEqual(1, len(extended_product.data_processes) )
self.assertEqual(3, len(extended_product.process_input_data_products) )
# log.debug("TestDataProductProvenance: DataProduct provenance_product_list %s", str(extended_product.provenance_product_list))
# log.debug("TestDataProductProvenance: DataProduct data_processes %s", str(extended_product.data_processes))
# log.debug("TestDataProductProvenance: DataProduct process_input_data_products %s", str(extended_product.process_input_data_products))
# log.debug("TestDataProductProvenance: provenance %s", str(extended_product.computed.provenance.value))
#-------------------------------
# Retrieve the extended resource for this data process
#-------------------------------
extended_process_def = self.dataprocessclient.get_data_process_definition_extension(ctd_L0_all_dprocdef_id)
# log.debug("TestDataProductProvenance: DataProcess extended_process_def %s", str(extended_process_def))
# log.debug("TestDataProductProvenance: DataProcess data_processes %s", str(extended_process_def.data_processes))
# log.debug("TestDataProductProvenance: DataProcess data_products %s", str(extended_process_def.data_products))
self.assertEqual(1, len(extended_process_def.data_processes) )
self.assertEqual(3, len(extended_process_def.output_stream_definitions) )
self.assertEqual(3, len(extended_process_def.data_products) ) #one list because of one data process
#-------------------------------
# Request the xml report
#-------------------------------
results = self.dpmsclient.get_data_product_provenance_report(ctd_l2_density_output_dp_id)
#-------------------------------
# Cleanup
#-------------------------------
self.dpmsclient.delete_data_product(ctd_parsed_data_product)
self.dpmsclient.delete_data_product(log_data_product_id)
self.dpmsclient.delete_data_product(ctd_l0_conductivity_output_dp_id)
self.dpmsclient.delete_data_product(ctd_l0_pressure_output_dp_id)
self.dpmsclient.delete_data_product(ctd_l0_temperature_output_dp_id)
self.dpmsclient.delete_data_product(ctd_l1_conductivity_output_dp_id)
self.dpmsclient.delete_data_product(ctd_l1_pressure_output_dp_id)
self.dpmsclient.delete_data_product(ctd_l1_temperature_output_dp_id)
self.dpmsclient.delete_data_product(ctd_l2_salinity_output_dp_id)
self.dpmsclient.delete_data_product(ctd_l2_density_output_dp_id)
def test_activate_rsn_vel3d(self):
log.info(
"--------------------------------------------------------------------------------------------------------"
)
# load_parameter_scenarios
self.container.spawn_process(
"Loader",
"ion.processes.bootstrap.ion_loader",
"IONLoader",
config=dict(
op="load",
scenario="BETA",
path="master",
categories=
"ParameterFunctions,ParameterDefs,ParameterDictionary,StreamDefinition",
clearcols="owner_id,org_ids",
assets="res/preload/r2_ioc/ooi_assets",
parseooi="True",
))
self.loggerpids = []
# Create InstrumentModel
instModel_obj = IonObject(RT.InstrumentModel,
name='Vel3DMModel',
description="Vel3DMModel")
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
log.debug('test_activate_rsn_vel3d new InstrumentModel id = %s ',
instModel_id)
raw_config = StreamConfiguration(stream_name='raw',
parameter_dictionary_name='raw')
vel3d_b_sample = StreamConfiguration(
stream_name='vel3d_b_sample',
parameter_dictionary_name='vel3d_b_sample')
vel3d_b_engineering = StreamConfiguration(
stream_name='vel3d_b_engineering',
parameter_dictionary_name='vel3d_b_engineering')
RSN_VEL3D_01 = {
'DEV_ADDR': "10.180.80.6",
'DEV_PORT': 2101,
'DATA_PORT': 1026,
'CMD_PORT': 1025,
'PA_BINARY': "port_agent"
}
# Create InstrumentAgent
instAgent_obj = IonObject(
RT.InstrumentAgent,
name='Vel3DAgent',
description="Vel3DAgent",
driver_uri=
"http://sddevrepo.oceanobservatories.org/releases/nobska_mavs4_ooicore-0.0.7-py2.7.egg",
stream_configurations=[
raw_config, vel3d_b_sample, vel3d_b_engineering
])
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
log.debug('test_activate_rsn_vel3d new InstrumentAgent id = %s',
instAgent_id)
self.imsclient.assign_instrument_model_to_instrument_agent(
instModel_id, instAgent_id)
# Create InstrumentDevice
log.debug(
'test_activate_rsn_vel3d: Create instrument resource to represent the Vel3D '
)
instDevice_obj = IonObject(RT.InstrumentDevice,
name='Vel3DDevice',
description="Vel3DDevice",
serial_number="12345")
instDevice_id = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(
instModel_id, instDevice_id)
log.debug("test_activate_rsn_vel3d: new InstrumentDevice id = %s ",
instDevice_id)
port_agent_config = {
'device_addr': '10.180.80.6',
'device_port': 2101,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': 1025,
'data_port': 1026,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance,
name='Vel3DAgentInstance',
description="Vel3DAgentInstance",
port_agent_config=port_agent_config,
alerts=[])
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, instDevice_id)
parsed_sample_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'vel3d_b_sample', id_only=True)
parsed_sample_stream_def_id = self.pubsubcli.create_stream_definition(
name='vel3d_b_sample',
parameter_dictionary_id=parsed_sample_pdict_id)
parsed_eng_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'vel3d_b_engineering', id_only=True)
parsed_eng_stream_def_id = self.pubsubcli.create_stream_definition(
name='vel3d_b_engineering',
parameter_dictionary_id=parsed_eng_pdict_id)
raw_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'raw', id_only=True)
raw_stream_def_id = self.pubsubcli.create_stream_definition(
name='raw', parameter_dictionary_id=raw_pdict_id)
#-------------------------------
# Create Raw and Parsed Data Products for the device
#-------------------------------
dp_obj = IonObject(RT.DataProduct,
name='vel3d_b_sample',
description='vel3d_b_sample')
sample_data_product_id = self.dpclient.create_data_product(
data_product=dp_obj,
stream_definition_id=parsed_sample_stream_def_id)
log.debug('new dp_id = %s', sample_data_product_id)
self.dpclient.activate_data_product_persistence(
data_product_id=sample_data_product_id)
self.damsclient.assign_data_product(
input_resource_id=instDevice_id,
data_product_id=sample_data_product_id)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(sample_data_product_id,
PRED.hasStream, None, True)
log.debug('sample_data_product streams1 = %s', stream_ids)
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.rrclient.find_objects(sample_data_product_id,
PRED.hasDataset,
RT.Dataset, True)
log.debug('Data set for sample_data_product = %s', dataset_ids[0])
self.parsed_dataset = dataset_ids[0]
pid = self.create_logger('vel3d_b_sample', stream_ids[0])
self.loggerpids.append(pid)
dp_obj = IonObject(RT.DataProduct,
name='vel3d_b_engineering',
description='vel3d_b_engineering')
eng_data_product_id = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_eng_stream_def_id)
log.debug('new dp_id = %s', eng_data_product_id)
self.dpclient.activate_data_product_persistence(
data_product_id=eng_data_product_id)
self.damsclient.assign_data_product(
input_resource_id=instDevice_id,
data_product_id=eng_data_product_id)
dp_obj = IonObject(RT.DataProduct,
name='the raw data',
description='raw stream test')
data_product_id2 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
log.debug('new dp_id = %s', data_product_id2)
self.damsclient.assign_data_product(input_resource_id=instDevice_id,
data_product_id=data_product_id2)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id2)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(data_product_id2,
PRED.hasStream, None, True)
log.debug('test_activate_rsn_vel3d Data product streams2 = %s',
str(stream_ids))
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.rrclient.find_objects(data_product_id2,
PRED.hasDataset,
RT.Dataset, True)
log.debug('test_activate_rsn_vel3d Data set for data_product_id2 = %s',
dataset_ids[0])
self.raw_dataset = dataset_ids[0]
def start_instrument_agent():
self.imsclient.start_instrument_agent_instance(
instrument_agent_instance_id=instAgentInstance_id)
gevent.joinall([gevent.spawn(start_instrument_agent)])
#cleanup
self.addCleanup(self.imsclient.stop_instrument_agent_instance,
instrument_agent_instance_id=instAgentInstance_id)
#wait for start
inst_agent_instance_obj = self.imsclient.read_instrument_agent_instance(
instAgentInstance_id)
gate = AgentProcessStateGate(self.processdispatchclient.read_process,
instDevice_id, ProcessStateEnum.RUNNING)
self.assertTrue(
gate. await (30),
"The instrument agent instance (%s) did not spawn in 30 seconds" %
gate.process_id)
#log.trace('Instrument agent instance obj: = %s' , str(inst_agent_instance_obj))
# Start a resource agent client to talk with the instrument agent.
self._ia_client = ResourceAgentClient(instDevice_id,
to_name=gate.process_id,
process=FakeProcess())
def check_state(label, desired_state):
actual_state = self._ia_client.get_agent_state()
log.debug("%s instrument agent is in state '%s'", label,
actual_state)
self.assertEqual(desired_state, actual_state)
log.debug("test_activate_rsn_vel3d: got ia client %s",
str(self._ia_client))
check_state("just-spawned", ResourceAgentState.UNINITIALIZED)
cmd = AgentCommand(command=ResourceAgentEvent.INITIALIZE)
retval = self._ia_client.execute_agent(cmd)
log.debug("test_activate_rsn_vel3d: initialize %s", str(retval))
check_state("initialized", ResourceAgentState.INACTIVE)
log.debug("test_activate_rsn_vel3d Sending go_active command ")
cmd = AgentCommand(command=ResourceAgentEvent.GO_ACTIVE)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activate_rsn_vel3d: return value from go_active %s",
str(reply))
check_state("activated", ResourceAgentState.IDLE)
cmd = AgentCommand(command=ResourceAgentEvent.GET_RESOURCE_STATE)
retval = self._ia_client.execute_agent(cmd)
state = retval.result
log.debug("current state after sending go_active command %s",
str(state))
#
cmd = AgentCommand(command=ResourceAgentEvent.RUN)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activate_rsn_vel3d: run %s", str(reply))
check_state("commanded", ResourceAgentState.COMMAND)
cmd = AgentCommand(command=ResourceAgentEvent.GET_RESOURCE_STATE)
retval = self._ia_client.execute_agent(cmd)
state = retval.result
log.debug("current state after sending run command %s", str(state))
# cmd = AgentCommand(command=ProtocolEvent.START_AUTOSAMPLE)
# reply = self._ia_client.execute_agent(cmd)
# log.debug("test_activate_rsn_vel3d: run %s" , str(reply))
# state = self._ia_client.get_agent_state()
# self.assertEqual(ResourceAgentState.COMMAND, state)
#
# gevent.sleep(5)
#
# cmd = AgentCommand(command=ProtocolEvent.STOP_AUTOSAMPLE)
# reply = self._ia_client.execute_agent(cmd)
# log.debug("test_activate_rsn_vel3d: run %s" , str(reply))
# state = self._ia_client.get_agent_state()
# self.assertEqual(ResourceAgentState.COMMAND, state)
#
# cmd = AgentCommand(command=ResourceAgentEvent.GET_RESOURCE_STATE)
# retval = self._ia_client.execute_agent(cmd)
# state = retval.result
# log.debug("current state after sending STOP_AUTOSAMPLE command %s" , str(state))
#
# cmd = AgentCommand(command=ResourceAgentEvent.PAUSE)
# retval = self._ia_client.execute_agent(cmd)
# state = self._ia_client.get_agent_state()
# self.assertEqual(ResourceAgentState.STOPPED, state)
#
# cmd = AgentCommand(command=ResourceAgentEvent.RESUME)
# retval = self._ia_client.execute_agent(cmd)
# state = self._ia_client.get_agent_state()
# self.assertEqual(ResourceAgentState.COMMAND, state)
#
# cmd = AgentCommand(command=ResourceAgentEvent.CLEAR)
# retval = self._ia_client.execute_agent(cmd)
# state = self._ia_client.get_agent_state()
# self.assertEqual(ResourceAgentState.IDLE, state)
#
# cmd = AgentCommand(command=ResourceAgentEvent.RUN)
# retval = self._ia_client.execute_agent(cmd)
# state = self._ia_client.get_agent_state()
# self.assertEqual(ResourceAgentState.COMMAND, state)
log.debug("test_activate_rsn_vel3d: calling reset ")
cmd = AgentCommand(command=ResourceAgentEvent.RESET)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activate_rsn_vel3d: return from reset %s", str(reply))
#--------------------------------------------------------------------------------
# Now get the data in one chunk using an RPC Call to start_retreive
#--------------------------------------------------------------------------------
replay_data_raw = self.dataretrieverclient.retrieve(self.raw_dataset)
self.assertIsInstance(replay_data_raw, Granule)
rdt_raw = RecordDictionaryTool.load_from_granule(replay_data_raw)
log.debug("RDT raw: %s", str(rdt_raw.pretty_print()))
self.assertIn('raw', rdt_raw)
raw_vals = rdt_raw['raw']
#--------------------------------------------------------------------------------
# Deactivate loggers
#--------------------------------------------------------------------------------
for pid in self.loggerpids:
self.processdispatchclient.cancel_process(pid)
self.dpclient.delete_data_product(sample_data_product_id)
self.dpclient.delete_data_product(eng_data_product_id)
self.dpclient.delete_data_product(data_product_id2)
def _create_instrument_resources(self):
# Create InstrumentModel
instModel_obj = IonObject(RT.InstrumentModel,
name='VEL3D',
description="VEL3D")
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
log.debug('new InstrumentModel id = %s ', instModel_id)
raw_config = StreamConfiguration(stream_name='raw',
parameter_dictionary_name='raw')
vel3d_b_sample = StreamConfiguration(
stream_name='vel3d_b_sample',
parameter_dictionary_name='vel3d_b_sample')
vel3d_b_engineering = StreamConfiguration(
stream_name='vel3d_b_engineering',
parameter_dictionary_name='vel3d_b_engineering')
# Create InstrumentAgent
instAgent_obj = IonObject(
RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri=
"http://sddevrepo.oceanobservatories.org/releases/nobska_mavs4_ooicore-0.0.7-py2.7.egg",
stream_configurations=[
raw_config, vel3d_b_sample, vel3d_b_engineering
])
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
log.debug('new InstrumentAgent id = %s', instAgent_id)
self.imsclient.assign_instrument_model_to_instrument_agent(
instModel_id, instAgent_id)
# Create InstrumentDevice
instDevice_obj = IonObject(RT.InstrumentDevice,
name='VEL3DDevice',
description="VEL3DDevice",
serial_number="12345")
self.instrument_device_id = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(
instModel_id, self.instrument_device_id)
port_agent_config = {
'device_addr': '10.180.80.6',
'device_port': 2101,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': 1025,
'data_port': 1026,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance,
name='VEL3DAgentInstance',
description="VEL3DAgentInstance",
port_agent_config=port_agent_config,
alerts=[])
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, self.instrument_device_id)
self._start_port_agent(
self.imsclient.read_instrument_agent_instance(
instAgentInstance_id))
vel3d_b_sample_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'vel3d_b_sample', id_only=True)
vel3d_b_sample_stream_def_id = self.pubsubclient.create_stream_definition(
name='vel3d_b_sample',
parameter_dictionary_id=vel3d_b_sample_pdict_id)
vel3d_b_engineering_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'vel3d_b_engineering', id_only=True)
vel3d_b_engineering_stream_def_id = self.pubsubclient.create_stream_definition(
name='vel3d_b_engineering',
parameter_dictionary_id=vel3d_b_engineering_pdict_id)
raw_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'raw', id_only=True)
raw_stream_def_id = self.pubsubclient.create_stream_definition(
name='raw', parameter_dictionary_id=raw_pdict_id)
#-------------------------------
# Create Raw and Parsed Data Products for the device
#-------------------------------
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
dp_obj = IonObject(RT.DataProduct,
name='vel3d_b_sample',
description='vel3d_b_sample')
data_product_id1 = self.dpclient.create_data_product(
data_product=dp_obj,
stream_definition_id=vel3d_b_sample_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=self.instrument_device_id,
data_product_id=data_product_id1)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id1)
dp_obj = IonObject(RT.DataProduct,
name='vel3d_b_engineering',
description='vel3d_b_engineering')
data_product_id2 = self.dpclient.create_data_product(
data_product=dp_obj,
stream_definition_id=vel3d_b_engineering_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=self.instrument_device_id,
data_product_id=data_product_id2)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id2)
dp_obj = IonObject(RT.DataProduct,
name='the raw data',
description='raw stream test')
data_product_id3 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=self.instrument_device_id,
data_product_id=data_product_id3)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id3)
#create instrument site and associated deployment
site_object = IonObject(RT.InstrumentSite, name='InstrumentSite1')
instrument_site_id = self.omsclient.create_instrument_site(
instrument_site=site_object, parent_id=self.platform_site_id)
log.debug('_create_instrument_site_and_deployment site id: %s',
instrument_site_id)
#create supporting objects for the Deployment resource
# 1. temporal constraint
# find current deployment using time constraints
current_time = int(calendar.timegm(time.gmtime()))
# two years on either side of current time
start = current_time - 63115200
end = current_time + 63115200
temporal_bounds = IonObject(OT.TemporalBounds,
name='planned',
start_datetime=str(start),
end_datetime=str(end))
# 2. PlatformPort object which defines device to port map
platform_port_obj = IonObject(
OT.PlatformPort,
reference_designator='GA01SUMO-FI003-03-CTDMO0999',
port_type=PortTypeEnum.PAYLOAD,
ip_address='0')
# now create the Deployment
deployment_obj = IonObject(
RT.Deployment,
name='TestInstrumentDeployment',
description='some new deployment',
context=IonObject(OT.CabledInstrumentDeploymentContext),
constraint_list=[temporal_bounds],
port_assignments={self.instrument_device_id: platform_port_obj})
instrument_deployment_id = self.omsclient.create_deployment(
deployment=deployment_obj,
site_id=instrument_site_id,
device_id=self.instrument_device_id)
log.debug('_create_instrument_site_and_deployment deployment_id: %s',
instrument_deployment_id)
def _create_instrument_resources(self):
# Create InstrumentModel
instModel_obj = IonObject(RT.InstrumentModel,
name='VEL3D',
description="VEL3D")
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
log.debug('new InstrumentModel id = %s ', instModel_id)
raw_config = StreamConfiguration(stream_name='raw',
parameter_dictionary_name='raw')
vel3d_b_sample = StreamConfiguration(
stream_name='vel3d_b_sample',
parameter_dictionary_name='vel3d_b_sample')
vel3d_b_engineering = StreamConfiguration(
stream_name='vel3d_b_engineering',
parameter_dictionary_name='vel3d_b_engineering')
# Create InstrumentAgent
instAgent_obj = IonObject(
RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri=
"http://sddevrepo.oceanobservatories.org/releases/nobska_mavs4_ooicore-0.0.7-py2.7.egg",
stream_configurations=[
raw_config, vel3d_b_sample, vel3d_b_engineering
])
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
log.debug('new InstrumentAgent id = %s', instAgent_id)
self.imsclient.assign_instrument_model_to_instrument_agent(
instModel_id, instAgent_id)
# Create InstrumentDevice
instDevice_obj = IonObject(RT.InstrumentDevice,
name='VEL3DDevice',
description="VEL3DDevice",
serial_number="12345")
self.instrument_device = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(
instModel_id, self.instrument_device)
port_agent_config = {
'device_addr': '10.180.80.6',
'device_port': 2101,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': 1025,
'data_port': 1026,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance,
name='VEL3DAgentInstance',
description="VEL3DAgentInstance",
port_agent_config=port_agent_config,
alerts=[])
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, self.instrument_device)
self._start_port_agent(
self.imsclient.read_instrument_agent_instance(
instAgentInstance_id))
vel3d_b_sample_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'vel3d_b_sample', id_only=True)
vel3d_b_sample_stream_def_id = self.pubsubclient.create_stream_definition(
name='vel3d_b_sample',
parameter_dictionary_id=vel3d_b_sample_pdict_id)
vel3d_b_engineering_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'vel3d_b_engineering', id_only=True)
vel3d_b_engineering_stream_def_id = self.pubsubclient.create_stream_definition(
name='vel3d_b_engineering',
parameter_dictionary_id=vel3d_b_engineering_pdict_id)
raw_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'raw', id_only=True)
raw_stream_def_id = self.pubsubclient.create_stream_definition(
name='raw', parameter_dictionary_id=raw_pdict_id)
#-------------------------------
# Create Raw and Parsed Data Products for the device
#-------------------------------
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
dp_obj = IonObject(RT.DataProduct,
name='vel3d_b_sample',
description='vel3d_b_sample',
temporal_domain=tdom,
spatial_domain=sdom)
data_product_id1 = self.dpclient.create_data_product(
data_product=dp_obj,
stream_definition_id=vel3d_b_sample_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=self.instrument_device,
data_product_id=data_product_id1)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id1)
dp_obj = IonObject(RT.DataProduct,
name='vel3d_b_engineering',
description='vel3d_b_engineering',
temporal_domain=tdom,
spatial_domain=sdom)
data_product_id2 = self.dpclient.create_data_product(
data_product=dp_obj,
stream_definition_id=vel3d_b_engineering_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=self.instrument_device,
data_product_id=data_product_id2)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id2)
dp_obj = IonObject(RT.DataProduct,
name='the raw data',
description='raw stream test',
temporal_domain=tdom,
spatial_domain=sdom)
data_product_id3 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=self.instrument_device,
data_product_id=data_product_id3)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id3)
def test_deploy_activate_full(self):
# ensure no processes or pids are left around by agents or Sims
#self.cleanupprocs()
self.loggerpids = []
#-------------------------------
# Create InstrumentModel
#-------------------------------
instModel_obj = IonObject(RT.InstrumentModel,
name='SBE37IMModel',
description="SBE37IMModel")
try:
instModel_id = self.imsclient.create_instrument_model(
instModel_obj)
except BadRequest as ex:
self.fail("failed to create new InstrumentModel: %s" % ex)
#-------------------------------
# Create InstrumentAgent
#-------------------------------
instAgent_obj = IonObject(RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri=DRV_URI_GOOD)
try:
instAgent_id = self.imsclient.create_instrument_agent(
instAgent_obj)
except BadRequest as ex:
self.fail("failed to create new InstrumentAgent: %s" % ex)
log.debug('new InstrumentAgent id = %s', instAgent_id)
self.imsclient.assign_instrument_model_to_instrument_agent(
instModel_id, instAgent_id)
#-------------------------------
# Create Instrument Site
#-------------------------------
instrumentSite_obj = IonObject(RT.InstrumentSite,
name='instrumentSite1',
description="SBE37IMInstrumentSite")
try:
instrumentSite_id = self.omsclient.create_instrument_site(
instrument_site=instrumentSite_obj, parent_id='')
except BadRequest as ex:
self.fail("failed to create new InstrumentSite: %s" % ex)
print 'test_deployAsPrimaryDevice: new instrumentSite id = ', instrumentSite_id
self.omsclient.assign_instrument_model_to_instrument_site(
instModel_id, instrumentSite_id)
#-------------------------------
# Logical Transform: Output Data Products
#-------------------------------
# Construct temporal and spatial Coordinate Reference System objects
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
parsed_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_parsed_param_dict', id_only=True)
parsed_stream_def_id = self.pubsubclient.create_stream_definition(
name='parsed', parameter_dictionary_id=parsed_pdict_id)
raw_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_raw_param_dict', id_only=True)
raw_stream_def_id = self.pubsubclient.create_stream_definition(
name='raw', parameter_dictionary_id=raw_pdict_id)
#-------------------------------
# Create Old InstrumentDevice
#-------------------------------
instDevice_obj = IonObject(
RT.InstrumentDevice,
name='SBE37IMDeviceYear1',
description="SBE37IMDevice for the FIRST year of deployment",
serial_number="12345")
try:
oldInstDevice_id = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(
instModel_id, oldInstDevice_id)
except BadRequest as ex:
self.fail("failed to create new InstrumentDevice: %s" % ex)
print 'test_deployAsPrimaryDevice: new Year 1 InstrumentDevice id = ', oldInstDevice_id
self.rrclient.execute_lifecycle_transition(oldInstDevice_id,
LCE.DEPLOY)
self.rrclient.execute_lifecycle_transition(oldInstDevice_id,
LCE.ENABLE)
#-------------------------------
# Create Raw and Parsed Data Products for the device
#-------------------------------
dp_obj = IonObject(RT.DataProduct,
name='SiteDataProduct',
description='SiteDataProduct',
temporal_domain=tdom,
spatial_domain=sdom)
instrument_site_output_dp_id = self.dataproductclient.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=oldInstDevice_id,
data_product_id=instrument_site_output_dp_id)
#self.dataproductclient.activate_data_product_persistence(data_product_id=instrument_site_output_dp_id)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(
instrument_site_output_dp_id, PRED.hasStream, None, True)
log.debug('Data product streams1 = %s', stream_ids)
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.rrclient.find_objects(
instrument_site_output_dp_id, PRED.hasDataset, RT.Dataset, True)
log.debug('Data set for data_product_id1 = %s', dataset_ids[0])
self.parsed_dataset = dataset_ids[0]
pid = self.create_logger('ctd_parsed', stream_ids[0])
self.loggerpids.append(pid)
#-------------------------------
# Create Old Deployment
#-------------------------------
deployment_obj = IonObject(RT.Deployment, name='first deployment')
oldDeployment_id = self.omsclient.create_deployment(deployment_obj)
# deploy this device to the logical slot
self.imsclient.deploy_instrument_device(oldInstDevice_id,
oldDeployment_id)
self.omsclient.deploy_instrument_site(instrumentSite_id,
oldDeployment_id)
#-------------------------------
# Create InstrumentAgentInstance for OldInstrumentDevice to hold configuration information
# cmd_port=5556, evt_port=5557, comms_method="ethernet", comms_device_address=CFG.device.sbe37.host, comms_device_port=CFG.device.sbe37.port,
#-------------------------------
port_agent_config = {
'device_addr': CFG.device.sbe37.host,
'device_port': CFG.device.sbe37.port,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': CFG.device.sbe37.port_agent_cmd_port,
'data_port': CFG.device.sbe37.port_agent_data_port,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
raw_config = StreamConfiguration(
stream_name='raw', parameter_dictionary_name='ctd_raw_param_dict')
parsed_config = StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='ctd_parsed_param_dict')
instAgentInstance_obj = IonObject(
RT.InstrumentAgentInstance,
name='SBE37IMAgentInstanceYear1',
description="SBE37IMAgentInstanceYear1",
port_agent_config=port_agent_config,
stream_configurations=[raw_config, parsed_config])
oldInstAgentInstance_id = self.imsclient.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, oldInstDevice_id)
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
#-------------------------------
# Create CTD Parsed as the Year 1 data product and attach to instrument
#-------------------------------
print 'Creating new CDM data product with a stream definition'
dp_obj = IonObject(RT.DataProduct,
name='ctd_parsed_year1',
description='ctd stream test year 1',
temporal_domain=tdom,
spatial_domain=sdom)
ctd_parsed_data_product_year1 = self.dataproductclient.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
print 'new ctd_parsed_data_product_id = ', ctd_parsed_data_product_year1
self.damsclient.assign_data_product(
input_resource_id=oldInstDevice_id,
data_product_id=ctd_parsed_data_product_year1)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(
ctd_parsed_data_product_year1, PRED.hasStream, None, True)
print 'test_deployAsPrimaryDevice: Data product streams1 = ', stream_ids
#-------------------------------
# Create New InstrumentDevice
#-------------------------------
instDevice_obj_2 = IonObject(
RT.InstrumentDevice,
name='SBE37IMDeviceYear2',
description="SBE37IMDevice for the SECOND year of deployment",
serial_number="67890")
try:
newInstDevice_id = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj_2)
self.imsclient.assign_instrument_model_to_instrument_device(
instModel_id, newInstDevice_id)
except BadRequest as ex:
self.fail("failed to create new InstrumentDevice: %s" % ex)
print 'test_deployAsPrimaryDevice: new Year 2 InstrumentDevice id = ', newInstDevice_id
#set the LCSTATE
self.rrclient.execute_lifecycle_transition(newInstDevice_id,
LCE.DEPLOY)
self.rrclient.execute_lifecycle_transition(newInstDevice_id,
LCE.ENABLE)
instDevice_obj_2 = self.rrclient.read(newInstDevice_id)
log.debug(
"test_deployAsPrimaryDevice: Create New InstrumentDevice LCSTATE: %s ",
str(instDevice_obj_2.lcstate))
#-------------------------------
# Create Old Deployment
#-------------------------------
deployment_obj = IonObject(RT.Deployment, name='second deployment')
newDeployment_id = self.omsclient.create_deployment(deployment_obj)
# deploy this device to the logical slot
self.imsclient.deploy_instrument_device(newInstDevice_id,
newDeployment_id)
self.omsclient.deploy_instrument_site(instrumentSite_id,
newDeployment_id)
#-------------------------------
# Create InstrumentAgentInstance for NewInstrumentDevice to hold configuration information
#-------------------------------
port_agent_config = {
'device_addr': 'sbe37-simulator.oceanobservatories.org',
'device_port': 4004,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': 4005,
'data_port': 4006,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(
RT.InstrumentAgentInstance,
name='SBE37IMAgentInstanceYear2',
description="SBE37IMAgentInstanceYear2",
port_agent_config=port_agent_config)
newInstAgentInstance_id = self.imsclient.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, newInstDevice_id)
#-------------------------------
# Create CTD Parsed as the Year 2 data product
#-------------------------------
dp_obj = IonObject(RT.DataProduct,
name='ctd_parsed_year2',
description='ctd stream test year 2',
temporal_domain=tdom,
spatial_domain=sdom)
ctd_parsed_data_product_year2 = self.dataproductclient.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
print 'new ctd_parsed_data_product_id = ', ctd_parsed_data_product_year2
self.damsclient.assign_data_product(
input_resource_id=newInstDevice_id,
data_product_id=ctd_parsed_data_product_year2)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(
ctd_parsed_data_product_year2, PRED.hasStream, None, True)
print 'test_deployAsPrimaryDevice: Data product streams2 = ', stream_ids
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Data Process Definition
#-------------------------------
log.debug(
"test_deployAsPrimaryDevice: create data process definition ctd_L0_all"
)
dpd_obj = IonObject(
RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
try:
ctd_L0_all_dprocdef_id = self.dataprocessclient.create_data_process_definition(
dpd_obj)
except BadRequest as ex:
self.fail(
"failed to create new ctd_L0_all data process definition: %s" %
ex)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Output Data Products
#-------------------------------
outgoing_stream_l0_conductivity_id = self.pubsubclient.create_stream_definition(
name='L0_Conductivity', parameter_dictionary_id=parsed_pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(
outgoing_stream_l0_conductivity_id,
ctd_L0_all_dprocdef_id,
binding='conductivity')
outgoing_stream_l0_pressure_id = self.pubsubclient.create_stream_definition(
name='L0_Pressure', parameter_dictionary_id=parsed_pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(
outgoing_stream_l0_pressure_id,
ctd_L0_all_dprocdef_id,
binding='pressure')
outgoing_stream_l0_temperature_id = self.pubsubclient.create_stream_definition(
name='L0_Temperature', parameter_dictionary_id=parsed_pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(
outgoing_stream_l0_temperature_id,
ctd_L0_all_dprocdef_id,
binding='temperature')
self.out_prod_dict = {}
log.debug(
"test_deployAsPrimaryDevice: create output data product L0 conductivity"
)
ctd_l0_conductivity_output_dp_obj = IonObject(
RT.DataProduct,
name='L0_Conductivity',
description='transform output conductivity',
temporal_domain=tdom,
spatial_domain=sdom)
ctd_l0_conductivity_output_dp_id = self.dataproductclient.create_data_product(
data_product=ctd_l0_conductivity_output_dp_obj,
stream_definition_id=parsed_stream_def_id)
self.out_prod_dict['conductivity'] = ctd_l0_conductivity_output_dp_id
#self.dataproductclient.activate_data_product_persistence(data_product_id=ctd_l0_conductivity_output_dp_id)
log.debug(
"test_deployAsPrimaryDevice: create output data product L0 pressure"
)
ctd_l0_pressure_output_dp_obj = IonObject(
RT.DataProduct,
name='L0_Pressure',
description='transform output pressure',
temporal_domain=tdom,
spatial_domain=sdom)
ctd_l0_pressure_output_dp_id = self.dataproductclient.create_data_product(
data_product=ctd_l0_pressure_output_dp_obj,
stream_definition_id=parsed_stream_def_id)
self.out_prod_dict['pressure'] = ctd_l0_pressure_output_dp_id
#self.dataproductclient.activate_data_product_persistence(data_product_id=ctd_l0_pressure_output_dp_id)
log.debug(
"test_deployAsPrimaryDevice: create output data product L0 temperature"
)
ctd_l0_temperature_output_dp_obj = IonObject(
RT.DataProduct,
name='L0_Temperature',
description='transform output temperature',
temporal_domain=tdom,
spatial_domain=sdom)
ctd_l0_temperature_output_dp_id = self.dataproductclient.create_data_product(
data_product=ctd_l0_temperature_output_dp_obj,
stream_definition_id=parsed_stream_def_id)
self.out_prod_dict['temperature'] = ctd_l0_temperature_output_dp_id
#self.dataproductclient.activate_data_product_persistence(data_product_id=ctd_l0_temperature_output_dp_id)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Create the data process, listening to Sim1 (later: logical instrument output product)
#-------------------------------
log.debug(
"test_deployAsPrimaryDevice: create L0 all data_process start")
try:
out_data_products = self.out_prod_dict.values()
ctd_l0_all_data_process_id = self.dataprocessclient.create_data_process(
ctd_L0_all_dprocdef_id, [ctd_parsed_data_product_year1],
out_data_products)
self.dataprocessclient.activate_data_process(
ctd_l0_all_data_process_id)
except BadRequest as ex:
self.fail("failed to create new data process: %s" % ex)
log.debug(
"test_deployAsPrimaryDevice: create L0 all data_process return")
#--------------------------------
# Activate the deployment
#--------------------------------
self.omsclient.activate_deployment(oldDeployment_id)
#-------------------------------
# Launch InstrumentAgentInstance Sim1, connect to the resource agent client
#-------------------------------
self.imsclient.start_instrument_agent_instance(
instrument_agent_instance_id=oldInstAgentInstance_id)
self.addCleanup(self.imsclient.stop_instrument_agent_instance,
instrument_agent_instance_id=oldInstAgentInstance_id)
#wait for start
instance_obj = self.imsclient.read_instrument_agent_instance(
oldInstAgentInstance_id)
gate = AgentProcessStateGate(self.processdispatchclient.read_process,
oldInstDevice_id,
ProcessStateEnum.RUNNING)
self.assertTrue(
gate. await (30),
"The instrument agent instance (%s) did not spawn in 30 seconds" %
gate.process_id)
inst_agent1_instance_obj = self.imsclient.read_instrument_agent_instance(
oldInstAgentInstance_id)
print 'test_deployAsPrimaryDevice: Instrument agent instance obj: = ', inst_agent1_instance_obj
# Start a resource agent client to talk with the instrument agent.
self._ia_client_sim1 = ResourceAgentClient('iaclient Sim1',
name=gate.process_id,
process=FakeProcess())
print 'activate_instrument: got _ia_client_sim1 %s', self._ia_client_sim1
log.debug(" test_deployAsPrimaryDevice:: got _ia_client_sim1 %s",
str(self._ia_client_sim1))
#-------------------------------
# Launch InstrumentAgentInstance Sim2, connect to the resource agent client
#-------------------------------
self.imsclient.start_instrument_agent_instance(
instrument_agent_instance_id=newInstAgentInstance_id)
self.addCleanup(self.imsclient.stop_instrument_agent_instance,
instrument_agent_instance_id=newInstAgentInstance_id)
#wait for start
instance_obj = self.imsclient.read_instrument_agent_instance(
newInstAgentInstance_id)
gate = AgentProcessStateGate(self.processdispatchclient.read_process,
oldInstDevice_id,
ProcessStateEnum.RUNNING)
self.assertTrue(
gate. await (30),
"The instrument agent instance (%s) did not spawn in 30 seconds" %
gate.process_id)
inst_agent2_instance_obj = self.imsclient.read_instrument_agent_instance(
newInstAgentInstance_id)
print 'test_deployAsPrimaryDevice: Instrument agent instance obj: = ', inst_agent2_instance_obj
# Start a resource agent client to talk with the instrument agent.
self._ia_client_sim2 = ResourceAgentClient('iaclient Sim2',
name=gate.process_id,
process=FakeProcess())
print 'activate_instrument: got _ia_client_sim2 %s', self._ia_client_sim2
log.debug(" test_deployAsPrimaryDevice:: got _ia_client_sim2 %s",
str(self._ia_client_sim2))
#-------------------------------
# Streaming Sim1 (old instrument)
#-------------------------------
cmd = AgentCommand(command=ResourceAgentEvent.INITIALIZE)
retval = self._ia_client_sim1.execute_agent(cmd)
log.debug("test_deployAsPrimaryDevice: initialize %s", str(retval))
log.debug("(L4-CI-SA-RQ-334): Sending go_active command ")
cmd = AgentCommand(command=ResourceAgentEvent.GO_ACTIVE)
reply = self._ia_client_sim1.execute_agent(cmd)
log.debug("test_deployAsPrimaryDevice: return value from go_active %s",
str(reply))
self.assertTrue(reply)
cmd = AgentCommand(command=ResourceAgentEvent.GET_RESOURCE_STATE)
retval = self._ia_client_sim1.execute_agent(cmd)
state = retval.result
log.debug(
"(L4-CI-SA-RQ-334): current state after sending go_active command %s",
str(state))
cmd = AgentCommand(command=ResourceAgentEvent.RUN)
reply = self._ia_client_sim1.execute_agent(cmd)
log.debug("test_deployAsPrimaryDevice: run %s", str(reply))
gevent.sleep(2)
cmd = AgentCommand(command=SBE37ProtocolEvent.START_AUTOSAMPLE)
retval = self._ia_client_sim1.execute_resource(cmd)
log.debug(
"test_activateInstrumentSample: return from START_AUTOSAMPLE: %s",
str(retval))
#-------------------------------
# Streaming Sim 2 (new instrument)
#-------------------------------
cmd = AgentCommand(command=ResourceAgentEvent.INITIALIZE)
retval = self._ia_client_sim2.execute_agent(cmd)
log.debug("test_deployAsPrimaryDevice: initialize_sim2 %s",
str(retval))
log.debug("(L4-CI-SA-RQ-334): Sending go_active command ")
cmd = AgentCommand(command=ResourceAgentEvent.GO_ACTIVE)
reply = self._ia_client_sim2.execute_agent(cmd)
log.debug(
"test_deployAsPrimaryDevice: return value from go_active_sim2 %s",
str(reply))
cmd = AgentCommand(command=ResourceAgentEvent.GET_RESOURCE_STATE)
retval = self._ia_client_sim2.execute_agent(cmd)
state = retval.result
log.debug(
"(L4-CI-SA-RQ-334): current state after sending go_active_sim2 command %s",
str(state))
cmd = AgentCommand(command=ResourceAgentEvent.RUN)
reply = self._ia_client_sim2.execute_agent(cmd)
log.debug("test_deployAsPrimaryDevice: run %s", str(reply))
gevent.sleep(2)
cmd = AgentCommand(command=SBE37ProtocolEvent.START_AUTOSAMPLE)
retval = self._ia_client_sim2.execute_resource(cmd)
log.debug(
"test_activateInstrumentSample: return from START_AUTOSAMPLE_sim2: %s",
str(retval))
gevent.sleep(10)
#-------------------------------
# Shutdown Sim1 (old instrument)
#-------------------------------
cmd = AgentCommand(command=SBE37ProtocolEvent.STOP_AUTOSAMPLE)
retval = self._ia_client_sim1.execute_resource(cmd)
log.debug(
"test_activateInstrumentSample: return from STOP_AUTOSAMPLE: %s",
str(retval))
log.debug("test_activateInstrumentSample: calling reset ")
cmd = AgentCommand(command=ResourceAgentEvent.RESET)
reply = self._ia_client_sim1.execute_agent(cmd)
log.debug("test_activateInstrumentSample: return from reset %s",
str(reply))
time.sleep(5)
#-------------------------------
# Shutdown Sim2 (old instrument)
#-------------------------------
cmd = AgentCommand(command=SBE37ProtocolEvent.STOP_AUTOSAMPLE)
retval = self._ia_client_sim2.execute_resource(cmd)
log.debug(
"test_activateInstrumentSample: return from STOP_AUTOSAMPLE_sim2: %s",
str(retval))
log.debug("test_activateInstrumentSample: calling reset_sim2 ")
cmd = AgentCommand(command=ResourceAgentEvent.RESET)
reply = self._ia_client_sim1.execute_agent(cmd)
log.debug("test_activateInstrumentSample: return from reset_sim2 %s",
str(reply))
time.sleep(5)
def test_activateInstrumentSample(self):
self.loggerpids = []
# Create InstrumentModel
instModel_obj = IonObject(RT.InstrumentModel,
name='SBE37IMModel',
description="SBE37IMModel")
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
log.debug('new InstrumentModel id = %s ', instModel_id)
raw_config = StreamConfiguration(stream_name='raw',
parameter_dictionary_name='raw')
parsed_config = StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='ctd_parsed_param_dict')
# Create InstrumentAgent
instAgent_obj = IonObject(
RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri=DRV_URI_GOOD,
stream_configurations=[raw_config, parsed_config])
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
log.debug('new InstrumentAgent id = %s', instAgent_id)
self.imsclient.assign_instrument_model_to_instrument_agent(
instModel_id, instAgent_id)
# Create InstrumentDevice
log.debug(
'test_activateInstrumentSample: Create instrument resource to represent the SBE37 (SA Req: L4-CI-SA-RQ-241) '
)
instDevice_obj = IonObject(RT.InstrumentDevice,
name='SBE37IMDevice',
description="SBE37IMDevice",
serial_number="12345")
instDevice_id = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(
instModel_id, instDevice_id)
log.debug(
"test_activateInstrumentSample: new InstrumentDevice id = %s (SA Req: L4-CI-SA-RQ-241) ",
instDevice_id)
port_agent_config = {
'device_addr': CFG.device.sbe37.host,
'device_port': CFG.device.sbe37.port,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': CFG.device.sbe37.port_agent_cmd_port,
'data_port': CFG.device.sbe37.port_agent_data_port,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance,
name='SBE37IMAgentInstance',
description="SBE37IMAgentInstance",
port_agent_config=port_agent_config,
alerts=[])
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, instDevice_id)
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
parsed_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_parsed_param_dict', id_only=True)
parsed_stream_def_id = self.pubsubcli.create_stream_definition(
name='parsed', parameter_dictionary_id=parsed_pdict_id)
raw_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'raw', id_only=True)
raw_stream_def_id = self.pubsubcli.create_stream_definition(
name='raw', parameter_dictionary_id=raw_pdict_id)
#-------------------------------
# Create Raw and Parsed Data Products for the device
#-------------------------------
dp_obj = IonObject(RT.DataProduct,
name='the parsed data',
description='ctd stream test',
temporal_domain=tdom,
spatial_domain=sdom)
data_product_id1 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
log.debug('new dp_id = %s', data_product_id1)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id1)
self.damsclient.assign_data_product(input_resource_id=instDevice_id,
data_product_id=data_product_id1)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(data_product_id1,
PRED.hasStream, None, True)
log.debug('Data product streams1 = %s', stream_ids)
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.rrclient.find_objects(data_product_id1,
PRED.hasDataset,
RT.Dataset, True)
log.debug('Data set for data_product_id1 = %s', dataset_ids[0])
self.parsed_dataset = dataset_ids[0]
pid = self.create_logger('ctd_parsed', stream_ids[0])
self.loggerpids.append(pid)
dp_obj = IonObject(RT.DataProduct,
name='the raw data',
description='raw stream test',
temporal_domain=tdom,
spatial_domain=sdom)
data_product_id2 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
log.debug('new dp_id = %s', data_product_id2)
self.damsclient.assign_data_product(input_resource_id=instDevice_id,
data_product_id=data_product_id2)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id2)
# setup notifications for the device and parsed data product
user_id_1 = self._create_notification(user_name='user_1',
instrument_id=instDevice_id,
product_id=data_product_id1)
#---------- Create notifications for another user and verify that we see different computed subscriptions for the two users ---------
user_id_2 = self._create_notification(user_name='user_2',
instrument_id=instDevice_id,
product_id=data_product_id2)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(data_product_id2,
PRED.hasStream, None, True)
log.debug('Data product streams2 = %s', str(stream_ids))
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.rrclient.find_objects(data_product_id2,
PRED.hasDataset,
RT.Dataset, True)
log.debug('Data set for data_product_id2 = %s', dataset_ids[0])
self.raw_dataset = dataset_ids[0]
#elastic search debug
es_indexes, _ = self.container.resource_registry.find_resources(
restype='ElasticSearchIndex')
log.debug('ElasticSearch indexes: %s', [i.name for i in es_indexes])
log.debug('Bootstrap %s', CFG.bootstrap.use_es)
def start_instrument_agent():
self.imsclient.start_instrument_agent_instance(
instrument_agent_instance_id=instAgentInstance_id)
gevent.joinall([gevent.spawn(start_instrument_agent)])
#cleanup
self.addCleanup(self.imsclient.stop_instrument_agent_instance,
instrument_agent_instance_id=instAgentInstance_id)
#wait for start
inst_agent_instance_obj = self.imsclient.read_instrument_agent_instance(
instAgentInstance_id)
gate = AgentProcessStateGate(self.processdispatchclient.read_process,
instDevice_id, ProcessStateEnum.RUNNING)
self.assertTrue(
gate. await (30),
"The instrument agent instance (%s) did not spawn in 30 seconds" %
gate.process_id)
#log.trace('Instrument agent instance obj: = %s' , str(inst_agent_instance_obj))
# Start a resource agent client to talk with the instrument agent.
self._ia_client = ResourceAgentClient(instDevice_id,
to_name=gate.process_id,
process=FakeProcess())
log.debug("test_activateInstrumentSample: got ia client %s",
str(self._ia_client))
cmd = AgentCommand(command=ResourceAgentEvent.INITIALIZE)
retval = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrumentSample: initialize %s", str(retval))
state = self._ia_client.get_agent_state()
self.assertEqual(ResourceAgentState.INACTIVE, state)
log.debug("(L4-CI-SA-RQ-334): Sending go_active command ")
cmd = AgentCommand(command=ResourceAgentEvent.GO_ACTIVE)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrument: return value from go_active %s",
str(reply))
state = self._ia_client.get_agent_state()
self.assertEqual(ResourceAgentState.IDLE, state)
cmd = AgentCommand(command=ResourceAgentEvent.GET_RESOURCE_STATE)
retval = self._ia_client.execute_agent(cmd)
state = retval.result
log.debug(
"(L4-CI-SA-RQ-334): current state after sending go_active command %s",
str(state))
cmd = AgentCommand(command=ResourceAgentEvent.RUN)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrumentSample: run %s", str(reply))
state = self._ia_client.get_agent_state()
self.assertEqual(ResourceAgentState.COMMAND, state)
cmd = AgentCommand(command=ResourceAgentEvent.PAUSE)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(ResourceAgentState.STOPPED, state)
cmd = AgentCommand(command=ResourceAgentEvent.RESUME)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(ResourceAgentState.COMMAND, state)
cmd = AgentCommand(command=ResourceAgentEvent.CLEAR)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(ResourceAgentState.IDLE, state)
cmd = AgentCommand(command=ResourceAgentEvent.RUN)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(ResourceAgentState.COMMAND, state)
cmd = AgentCommand(command=SBE37ProtocolEvent.ACQUIRE_SAMPLE)
for i in xrange(10):
retval = self._ia_client.execute_resource(cmd)
log.debug("test_activateInstrumentSample: return from sample %s",
str(retval))
log.debug("test_activateInstrumentSample: calling reset ")
cmd = AgentCommand(command=ResourceAgentEvent.RESET)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrumentSample: return from reset %s",
str(reply))
#--------------------------------------------------------------------------------
# Now get the data in one chunk using an RPC Call to start_retreive
#--------------------------------------------------------------------------------
replay_data_raw = self.dataretrieverclient.retrieve(self.raw_dataset)
self.assertIsInstance(replay_data_raw, Granule)
rdt_raw = RecordDictionaryTool.load_from_granule(replay_data_raw)
log.debug("RDT raw: %s", str(rdt_raw.pretty_print()))
self.assertIn('raw', rdt_raw)
raw_vals = rdt_raw['raw']
all_raw = "".join(raw_vals)
# look for 't' entered after a prompt -- ">t"
t_commands = all_raw.count(">t")
if 10 != t_commands:
log.error("%s raw_vals: ", len(raw_vals))
for i, r in enumerate(raw_vals):
log.error("raw val %s: %s", i, [r])
self.fail("Expected 10 't' strings in raw_vals, got %s" %
t_commands)
else:
log.debug("%s raw_vals: ", len(raw_vals))
for i, r in enumerate(raw_vals):
log.debug("raw val %s: %s", i, [r])
replay_data_parsed = self.dataretrieverclient.retrieve(
self.parsed_dataset)
self.assertIsInstance(replay_data_parsed, Granule)
rdt_parsed = RecordDictionaryTool.load_from_granule(replay_data_parsed)
log.debug("test_activateInstrumentSample: RDT parsed: %s",
str(rdt_parsed.pretty_print()))
self.assertIn('temp', rdt_parsed)
temp_vals = rdt_parsed['temp']
pressure_vals = rdt_parsed['pressure']
if 10 != len(temp_vals):
log.error("%s temp_vals: %s", len(temp_vals), temp_vals)
self.fail("Expected 10 temp_vals, got %s" % len(temp_vals))
log.debug("l4-ci-sa-rq-138")
"""
Physical resource control shall be subject to policy
Instrument management control capabilities shall be subject to policy
The actor accessing the control capabilities must be authorized to send commands.
note from maurice 2012-05-18: Talk to tim M to verify that this is policy. If it is then talk with Stephen to
get an example of a policy test and use that to create a test stub that will be
completed when we have instrument policies.
Tim M: The "actor", aka observatory operator, will access the instrument through ION.
"""
#--------------------------------------------------------------------------------
# Get the extended data product to see if it contains the granules
#--------------------------------------------------------------------------------
extended_product = self.dpclient.get_data_product_extension(
data_product_id=data_product_id1, user_id=user_id_1)
def poller(extended_product):
return len(extended_product.computed.user_notification_requests.
value) == 1
poll(poller, extended_product, timeout=30)
self._check_computed_attributes_of_extended_product(
expected_data_product_id=data_product_id1,
extended_data_product=extended_product)
#--------------------------------------------------------------------------------
# Get the extended instrument
#--------------------------------------------------------------------------------
extended_instrument = self.imsclient.get_instrument_device_extension(
instrument_device_id=instDevice_id, user_id=user_id_1)
#--------------------------------------------------------------------------------
# For the second user, check the extended data product and the extended intrument
#--------------------------------------------------------------------------------
extended_product = self.dpclient.get_data_product_extension(
data_product_id=data_product_id2, user_id=user_id_2)
self._check_computed_attributes_of_extended_product(
expected_data_product_id=data_product_id2,
extended_data_product=extended_product)
#--------------------------------------------------------------------------------
# Get the extended instrument
#--------------------------------------------------------------------------------
extended_instrument = self.imsclient.get_instrument_device_extension(
instrument_device_id=instDevice_id, user_id=user_id_2)
self._check_computed_attributes_of_extended_instrument(
expected_instrument_device_id=instDevice_id,
extended_instrument=extended_instrument)
#--------------------------------------------------------------------------------
# Deactivate loggers
#--------------------------------------------------------------------------------
for pid in self.loggerpids:
self.processdispatchclient.cancel_process(pid)
self.dpclient.delete_data_product(data_product_id1)
self.dpclient.delete_data_product(data_product_id2)
def test_activateInstrumentSample(self):
self.loggerpids = []
# Create InstrumentModel
instModel_obj = IonObject(RT.InstrumentModel,
name='SBE37IMModel',
description="SBE37IMModel")
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
log.debug('new InstrumentModel id = %s ', instModel_id)
#Create stream alarms
"""
test_two_sided_interval
Test interval alarm and alarm event publishing for a closed
inteval.
"""
# kwargs = {
# 'name' : 'test_sim_warning',
# 'stream_name' : 'parsed',
# 'value_id' : 'temp',
# 'message' : 'Temperature is above test range of 5.0.',
# 'type' : StreamAlarmType.WARNING,
# 'upper_bound' : 5.0,
# 'upper_rel_op' : '<'
# }
kwargs = {
'name': 'temperature_warning_interval',
'stream_name': 'parsed',
'value_id': 'temp',
'message':
'Temperature is below the normal range of 50.0 and above.',
'type': StreamAlarmType.WARNING,
'lower_bound': 50.0,
'lower_rel_op': '<'
}
# Create alarm object.
alarm = {}
alarm['type'] = 'IntervalAlarmDef'
alarm['kwargs'] = kwargs
raw_config = StreamConfiguration(
stream_name='raw',
parameter_dictionary_name='ctd_raw_param_dict',
records_per_granule=2,
granule_publish_rate=5)
parsed_config = StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='ctd_parsed_param_dict',
records_per_granule=2,
granule_publish_rate=5,
alarms=[alarm])
# Create InstrumentAgent
instAgent_obj = IonObject(
RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri=
"http://sddevrepo.oceanobservatories.org/releases/seabird_sbe37smb_ooicore-0.0.1a-py2.7.egg",
stream_configurations=[raw_config, parsed_config])
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
log.debug('new InstrumentAgent id = %s', instAgent_id)
self.imsclient.assign_instrument_model_to_instrument_agent(
instModel_id, instAgent_id)
# Create InstrumentDevice
log.debug(
'test_activateInstrumentSample: Create instrument resource to represent the SBE37 (SA Req: L4-CI-SA-RQ-241) '
)
instDevice_obj = IonObject(RT.InstrumentDevice,
name='SBE37IMDevice',
description="SBE37IMDevice",
serial_number="12345")
instDevice_id = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(
instModel_id, instDevice_id)
log.debug(
"test_activateInstrumentSample: new InstrumentDevice id = %s (SA Req: L4-CI-SA-RQ-241) ",
instDevice_id)
port_agent_config = {
'device_addr': CFG.device.sbe37.host,
'device_port': CFG.device.sbe37.port,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': CFG.device.sbe37.port_agent_cmd_port,
'data_port': CFG.device.sbe37.port_agent_data_port,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance,
name='SBE37IMAgentInstance',
description="SBE37IMAgentInstance",
port_agent_config=port_agent_config)
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, instDevice_id)
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
parsed_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_parsed_param_dict', id_only=True)
parsed_stream_def_id = self.pubsubcli.create_stream_definition(
name='parsed', parameter_dictionary_id=parsed_pdict_id)
raw_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_raw_param_dict', id_only=True)
raw_stream_def_id = self.pubsubcli.create_stream_definition(
name='raw', parameter_dictionary_id=raw_pdict_id)
#-------------------------------
# Create Raw and Parsed Data Products for the device
#-------------------------------
dp_obj = IonObject(RT.DataProduct,
name='the parsed data',
description='ctd stream test',
temporal_domain=tdom,
spatial_domain=sdom)
data_product_id1 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
log.debug('new dp_id = %s', data_product_id1)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id1)
self.damsclient.assign_data_product(input_resource_id=instDevice_id,
data_product_id=data_product_id1)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(data_product_id1,
PRED.hasStream, None, True)
log.debug('Data product streams1 = %s', stream_ids)
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.rrclient.find_objects(data_product_id1,
PRED.hasDataset,
RT.Dataset, True)
log.debug('Data set for data_product_id1 = %s', dataset_ids[0])
self.parsed_dataset = dataset_ids[0]
pid = self.create_logger('ctd_parsed', stream_ids[0])
self.loggerpids.append(pid)
dp_obj = IonObject(RT.DataProduct,
name='the raw data',
description='raw stream test',
temporal_domain=tdom,
spatial_domain=sdom)
data_product_id2 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
log.debug('new dp_id = %s', data_product_id2)
self.damsclient.assign_data_product(input_resource_id=instDevice_id,
data_product_id=data_product_id2)
self.dpclient.activate_data_product_persistence(
data_product_id=data_product_id2)
# setup notifications for the device and parsed data product
user_id_1 = self._create_notification(user_name='user_1',
instrument_id=instDevice_id,
product_id=data_product_id1)
#---------- Create notifications for another user and verify that we see different computed subscriptions for the two users ---------
user_id_2 = self._create_notification(user_name='user_2',
instrument_id=instDevice_id,
product_id=data_product_id2)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(data_product_id2,
PRED.hasStream, None, True)
log.debug('Data product streams2 = %s', str(stream_ids))
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.rrclient.find_objects(data_product_id2,
PRED.hasDataset,
RT.Dataset, True)
log.debug('Data set for data_product_id2 = %s', dataset_ids[0])
self.raw_dataset = dataset_ids[0]
#elastic search debug
es_indexes, _ = self.container.resource_registry.find_resources(
restype='ElasticSearchIndex')
log.debug('ElasticSearch indexes: %s', [i.name for i in es_indexes])
log.debug('Bootstrap %s', CFG.bootstrap.use_es)
def start_instrument_agent():
self.imsclient.start_instrument_agent_instance(
instrument_agent_instance_id=instAgentInstance_id)
gevent.joinall([gevent.spawn(start_instrument_agent)])
#setup a subscriber to alarm events from the device
self._events_received = []
self._event_count = 0
self._samples_out_of_range = 0
self._samples_complete = False
self._async_sample_result = AsyncResult()
def consume_event(*args, **kwargs):
log.debug(
'TestActivateInstrument recieved ION event: args=%s, kwargs=%s, event=%s.',
str(args), str(kwargs), str(args[0]))
self._events_received.append(args[0])
self._event_count = len(self._events_received)
self._async_sample_result.set()
self._event_subscriber = EventSubscriber(
event_type=
'StreamWarningAlarmEvent', #'StreamWarningAlarmEvent', # StreamAlarmEvent
callback=consume_event,
origin=instDevice_id)
self._event_subscriber.start()
#cleanup
self.addCleanup(self.imsclient.stop_instrument_agent_instance,
instrument_agent_instance_id=instAgentInstance_id)
def stop_subscriber():
self._event_subscriber.stop()
self._event_subscriber = None
self.addCleanup(stop_subscriber)
#wait for start
inst_agent_instance_obj = self.imsclient.read_instrument_agent_instance(
instAgentInstance_id)
gate = ProcessStateGate(self.processdispatchclient.read_process,
inst_agent_instance_obj.agent_process_id,
ProcessStateEnum.RUNNING)
self.assertTrue(
gate. await (30),
"The instrument agent instance (%s) did not spawn in 30 seconds" %
inst_agent_instance_obj.agent_process_id)
log.debug('Instrument agent instance obj: = %s',
str(inst_agent_instance_obj))
# Start a resource agent client to talk with the instrument agent.
self._ia_client = ResourceAgentClient(
instDevice_id,
to_name=inst_agent_instance_obj.agent_process_id,
process=FakeProcess())
log.debug("test_activateInstrumentSample: got ia client %s",
str(self._ia_client))
cmd = AgentCommand(command=ResourceAgentEvent.INITIALIZE)
retval = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrumentSample: initialize %s", str(retval))
state = self._ia_client.get_agent_state()
self.assertEqual(state, ResourceAgentState.INACTIVE)
log.debug("(L4-CI-SA-RQ-334): Sending go_active command ")
cmd = AgentCommand(command=ResourceAgentEvent.GO_ACTIVE)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrument: return value from go_active %s",
str(reply))
state = self._ia_client.get_agent_state()
self.assertEqual(state, ResourceAgentState.IDLE)
cmd = AgentCommand(command=ResourceAgentEvent.GET_RESOURCE_STATE)
retval = self._ia_client.execute_agent(cmd)
state = retval.result
log.debug(
"(L4-CI-SA-RQ-334): current state after sending go_active command %s",
str(state))
cmd = AgentCommand(command=ResourceAgentEvent.RUN)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrumentSample: run %s", str(reply))
state = self._ia_client.get_agent_state()
self.assertEqual(state, ResourceAgentState.COMMAND)
cmd = AgentCommand(command=ResourceAgentEvent.PAUSE)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(state, ResourceAgentState.STOPPED)
cmd = AgentCommand(command=ResourceAgentEvent.RESUME)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(state, ResourceAgentState.COMMAND)
cmd = AgentCommand(command=ResourceAgentEvent.CLEAR)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(state, ResourceAgentState.IDLE)
cmd = AgentCommand(command=ResourceAgentEvent.RUN)
retval = self._ia_client.execute_agent(cmd)
state = self._ia_client.get_agent_state()
self.assertEqual(state, ResourceAgentState.COMMAND)
cmd = AgentCommand(command=SBE37ProtocolEvent.ACQUIRE_SAMPLE)
for i in xrange(10):
retval = self._ia_client.execute_resource(cmd)
log.debug("test_activateInstrumentSample: return from sample %s",
str(retval))
log.debug("test_activateInstrumentSample: calling reset ")
cmd = AgentCommand(command=ResourceAgentEvent.RESET)
reply = self._ia_client.execute_agent(cmd)
log.debug("test_activateInstrumentSample: return from reset %s",
str(reply))
self._samples_complete = True
#--------------------------------------------------------------------------------
# Now get the data in one chunk using an RPC Call to start_retreive
#--------------------------------------------------------------------------------
replay_data = self.dataretrieverclient.retrieve(self.parsed_dataset)
self.assertIsInstance(replay_data, Granule)
rdt = RecordDictionaryTool.load_from_granule(replay_data)
log.debug("test_activateInstrumentSample: RDT parsed: %s",
str(rdt.pretty_print()))
temp_vals = rdt['temp']
self.assertEquals(len(temp_vals), 10)
log.debug("test_activateInstrumentSample: all temp_vals: %s",
temp_vals)
#out_of_range_temp_vals = [i for i in temp_vals if i > 5]
out_of_range_temp_vals = [i for i in temp_vals if i < 50.0]
log.debug("test_activateInstrumentSample: Out_of_range_temp_vals: %s",
out_of_range_temp_vals)
self._samples_out_of_range = len(out_of_range_temp_vals)
# if no bad values were produced, then do not wait for an event
if self._samples_out_of_range == 0:
self._async_sample_result.set()
log.debug("test_activateInstrumentSample: _events_received: %s",
self._events_received)
log.debug("test_activateInstrumentSample: _event_count: %s",
self._event_count)
self._async_sample_result.get(timeout=CFG.endpoint.receive.timeout)
replay_data = self.dataretrieverclient.retrieve(self.raw_dataset)
self.assertIsInstance(replay_data, Granule)
rdt = RecordDictionaryTool.load_from_granule(replay_data)
log.debug("RDT raw: %s", str(rdt.pretty_print()))
raw_vals = rdt['raw']
self.assertEquals(len(raw_vals), 10)
log.debug("l4-ci-sa-rq-138")
"""
Physical resource control shall be subject to policy
Instrument management control capabilities shall be subject to policy
The actor accessing the control capabilities must be authorized to send commands.
note from maurice 2012-05-18: Talk to tim M to verify that this is policy. If it is then talk with Stephen to
get an example of a policy test and use that to create a test stub that will be
completed when we have instrument policies.
Tim M: The "actor", aka observatory operator, will access the instrument through ION.
"""
#--------------------------------------------------------------------------------
# Get the extended data product to see if it contains the granules
#--------------------------------------------------------------------------------
extended_product = self.dpclient.get_data_product_extension(
data_product_id=data_product_id1, user_id=user_id_1)
def poller(extended_product):
return len(extended_product.computed.user_notification_requests.
value) == 1
poll(poller, extended_product, timeout=30)
self._check_computed_attributes_of_extended_product(
expected_data_product_id=data_product_id1,
extended_data_product=extended_product)
#--------------------------------------------------------------------------------
#put some events into the eventsdb to test - this should set the comms and data status to WARNING
#--------------------------------------------------------------------------------
t = get_ion_ts()
self.event_publisher.publish_event(ts_created=t,
event_type='DeviceStatusEvent',
origin=instDevice_id,
state=DeviceStatusType.OUT_OF_RANGE,
values=[200])
self.event_publisher.publish_event(
ts_created=t,
event_type='DeviceCommsEvent',
origin=instDevice_id,
state=DeviceCommsType.DATA_DELIVERY_INTERRUPTION,
lapse_interval_seconds=20)
#--------------------------------------------------------------------------------
# Get the extended instrument
#--------------------------------------------------------------------------------
extended_instrument = self.imsclient.get_instrument_device_extension(
instrument_device_id=instDevice_id, user_id=user_id_1)
self._check_computed_attributes_of_extended_instrument(
expected_instrument_device_id=instDevice_id,
extended_instrument=extended_instrument)
#--------------------------------------------------------------------------------
# For the second user, check the extended data product and the extended intrument
#--------------------------------------------------------------------------------
extended_product = self.dpclient.get_data_product_extension(
data_product_id=data_product_id2, user_id=user_id_2)
self._check_computed_attributes_of_extended_product(
expected_data_product_id=data_product_id2,
extended_data_product=extended_product)
#---------- Put some events into the eventsdb to test - this should set the comms and data status to WARNING ---------
t = get_ion_ts()
self.event_publisher.publish_event(ts_created=t,
event_type='DeviceStatusEvent',
origin=instDevice_id,
state=DeviceStatusType.OUT_OF_RANGE,
values=[200])
self.event_publisher.publish_event(
ts_created=t,
event_type='DeviceCommsEvent',
origin=instDevice_id,
state=DeviceCommsType.DATA_DELIVERY_INTERRUPTION,
lapse_interval_seconds=20)
#--------------------------------------------------------------------------------
# Get the extended instrument
#--------------------------------------------------------------------------------
extended_instrument = self.imsclient.get_instrument_device_extension(
instrument_device_id=instDevice_id, user_id=user_id_2)
self._check_computed_attributes_of_extended_instrument(
expected_instrument_device_id=instDevice_id,
extended_instrument=extended_instrument)
#--------------------------------------------------------------------------------
# Deactivate loggers
#--------------------------------------------------------------------------------
for pid in self.loggerpids:
self.processdispatchclient.cancel_process(pid)
self.dpclient.delete_data_product(data_product_id1)
self.dpclient.delete_data_product(data_product_id2)
def _make_instrument_agent_structure(agent_config=None):
if None is agent_config: agent_config = {}
# instance creation
instrument_agent_instance_obj = any_old(
RT.InstrumentAgentInstance, {
"startup_config": inst_startup_config,
'alerts': generic_alerts_config
})
instrument_agent_instance_obj.agent_config = agent_config
instrument_agent_instance_id = self.IMS.create_instrument_agent_instance(
instrument_agent_instance_obj)
# agent creation
raw_config = StreamConfiguration(
stream_name='raw',
parameter_dictionary_name='ctd_raw_param_dict')
instrument_agent_obj = any_old(
RT.InstrumentAgent, {"stream_configurations": [raw_config]})
instrument_agent_id = self.IMS.create_instrument_agent(
instrument_agent_obj)
# device creation
instrument_device_id = self.IMS.create_instrument_device(
any_old(RT.InstrumentDevice))
# data product creation
dp_obj = any_old(RT.DataProduct)
dp_id = self.DP.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
self.DAMS.assign_data_product(
input_resource_id=instrument_device_id, data_product_id=dp_id)
self.DP.activate_data_product_persistence(data_product_id=dp_id)
self.addCleanup(self.DP.suspend_data_product_persistence, dp_id)
#deployment creation
site_obj = IonObject(RT.InstrumentSite, name='siteInstrument')
site_id = self.OMS.create_instrument_site(instrument_site=site_obj)
# find current deployment using time constraints
current_time = int(calendar.timegm(time.gmtime()))
# two years on either side of current time
start = current_time - 63115200
end = current_time + 63115200
temporal_bounds = IonObject(OT.TemporalBounds,
name='planned',
start_datetime=str(start),
end_datetime=str(end))
platform_port_obj = IonObject(
OT.PlatformPort,
reference_designator='GA01SUMO-FI003-08-CTDMO0888',
port_type=PortTypeEnum.PAYLOAD,
ip_address=0)
deployment_obj = IonObject(
RT.Deployment,
name='TestDeployment for Cabled Instrument',
description='some new deployment',
context=IonObject(OT.CabledInstrumentDeploymentContext),
constraint_list=[temporal_bounds],
port_assignments={instrument_device_id: platform_port_obj})
deploy_id = self.OMS.create_deployment(
deployment=deployment_obj,
site_id=site_id,
device_id=instrument_device_id)
# assignments
self.RR2.assign_instrument_agent_instance_to_instrument_device_with_has_agent_instance(
instrument_agent_instance_id, instrument_device_id)
self.RR2.assign_instrument_agent_to_instrument_agent_instance_with_has_agent_definition(
instrument_agent_id, instrument_agent_instance_id)
self.RR2.assign_instrument_device_to_org_with_has_resource(
instrument_agent_instance_id, org_id)
return instrument_agent_instance_id, instrument_agent_id, instrument_device_id
def create_device_site_deployment(self,
dep_name="Deployment",
starting=''):
from interface.objects import StreamConfiguration, StreamConfigurationType, InstrumentDevice
from interface.objects import InstrumentModel, PlatformAgent, InstrumentSite, TemporalBounds, Deployment
from interface.objects import RemotePlatformDeploymentContext
stream_conf = StreamConfiguration(
stream_name="CTD 1 Parsed Stream",
parameter_dictionary_name='ctd_parsed_param_dict',
stream_type=StreamConfigurationType.PARSED)
pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
name='ctd_parsed_param_dict')
stream_def_id = self.create_stream_definition(
name='CTD 1', parameter_dictionary_id=pdict_id)
data_product_id = self.create_data_product(
name="DDP_1",
stream_def_id=stream_def_id,
stream_configuration=stream_conf)
self.activate_data_product(data_product_id)
dataset_id = self.RR2.find_dataset_id_of_data_product_using_has_dataset(
data_product_id)
stream_def = self.resource_registry.find_objects(
data_product_id, PRED.hasStreamDefinition)[0][0]
param_dict = self.resource_registry.find_objects(
stream_def._id, PRED.hasParameterDictionary)[0][0]
# Add data to the DataProduct
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
rdt = self.ph.get_rdt(stream_def._id)
rdt_ = self.ph.rdt_for_data_product(data_product_id)
self.assertEquals(rdt.fields, rdt_.fields)
rdt['time'] = [0, 1, 2, 3]
rdt['temp'] = [10, 11, 12, 13]
self.ph.publish_rdt_to_data_product(data_product_id, rdt)
self.assertTrue(dataset_monitor.wait())
# Create Device
device = InstrumentDevice(name='Device 1')
device_id = self.instrument_management.create_instrument_device(device)
self.data_acquisition_management.register_instrument(device_id)
self.data_acquisition_management.assign_data_product(
device_id, data_product_id)
# Create Model
model = InstrumentModel(name='Model 1')
model_id = self.instrument_management.create_instrument_model(model)
self.instrument_management.assign_instrument_model_to_instrument_device(
model_id, device_id)
# Create AgentDefinition
ad = PlatformAgent(stream_configurations=[stream_conf])
ad_id, _ = self.resource_registry.create(ad)
# Create Site
site = InstrumentSite(name='Site 1',
stream_configurations=[stream_conf])
site_id, _ = self.resource_registry.create(site)
self.resource_registry.create_association(site_id, PRED.hasModel,
model_id)
self.resource_registry.create_association(site_id,
PRED.hasAgentDefinition,
ad_id)
# TemporalBounds of the Deployment
temp_bounds = TemporalBounds(start_datetime=starting, end_datetime='')
# Create Deployment
deployment = Deployment(name=dep_name,
type="RemotePlatform",
context=RemotePlatformDeploymentContext(),
constraint_list=[temp_bounds])
deployment_id = self.observatory_management.create_deployment(
deployment=deployment, site_id=site_id, device_id=device_id)
return site_id, device_id, dataset_id, deployment_id, param_dict, data_product_id
def test_resource_state_save_restore(self):
# Create InstrumentModel
instModel_obj = IonObject(RT.InstrumentModel,
name='SBE37IMModel',
description="SBE37IMModel")
instModel_id = self.IMS.create_instrument_model(instModel_obj)
log.debug('new InstrumentModel id = %s ', instModel_id)
# Create InstrumentAgent
raw_config = StreamConfiguration(
stream_name='raw', parameter_dictionary_name='ctd_raw_param_dict')
parsed_config = StreamConfiguration(
stream_name='parsed',
parameter_dictionary_name='ctd_parsed_param_dict')
instAgent_obj = IonObject(
RT.InstrumentAgent,
name='agent007',
description="SBE37IMAgent",
driver_uri=DRV_URI_GOOD,
stream_configurations=[raw_config, parsed_config])
instAgent_id = self.IMS.create_instrument_agent(instAgent_obj)
log.debug('new InstrumentAgent id = %s', instAgent_id)
self.IMS.assign_instrument_model_to_instrument_agent(
instModel_id, instAgent_id)
# Create InstrumentDevice
log.debug(
'test_activateInstrumentSample: Create instrument resource to represent the SBE37 '
+ '(SA Req: L4-CI-SA-RQ-241) ')
instDevice_obj = IonObject(RT.InstrumentDevice,
name='SBE37IMDevice',
description="SBE37IMDevice",
serial_number="12345")
instDevice_id = self.IMS.create_instrument_device(
instrument_device=instDevice_obj)
self.IMS.assign_instrument_model_to_instrument_device(
instModel_id, instDevice_id)
log.debug(
"test_activateInstrumentSample: new InstrumentDevice id = %s (SA Req: L4-CI-SA-RQ-241) ",
instDevice_id)
port_agent_config = {
'device_addr': CFG.device.sbe37.host,
'device_port': CFG.device.sbe37.port,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': CFG.device.sbe37.port_agent_cmd_port,
'data_port': CFG.device.sbe37.port_agent_data_port,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance,
name='SBE37IMAgentInstance',
description="SBE37IMAgentInstance",
port_agent_config=port_agent_config)
instAgentInstance_id = self.IMS.create_instrument_agent_instance(
instAgentInstance_obj, instAgent_id, instDevice_id)
spdict_id = self.DSC.read_parameter_dictionary_by_name(
'ctd_parsed_param_dict', id_only=True)
parsed_stream_def_id = self.PSC.create_stream_definition(
name='parsed', parameter_dictionary_id=spdict_id)
rpdict_id = self.DSC.read_parameter_dictionary_by_name(
'ctd_raw_param_dict', id_only=True)
raw_stream_def_id = self.PSC.create_stream_definition(
name='raw', parameter_dictionary_id=rpdict_id)
#-------------------------------
# Create Raw and Parsed Data Products for the device
#-------------------------------
dp_obj = IonObject(RT.DataProduct,
name='the parsed data',
description='ctd stream test')
data_product_id1 = self.DP.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
log.debug('new dp_id = %s', data_product_id1)
self.DAMS.assign_data_product(input_resource_id=instDevice_id,
data_product_id=data_product_id1)
self.DP.activate_data_product_persistence(
data_product_id=data_product_id1)
self.addCleanup(self.DP.suspend_data_product_persistence,
data_product_id1)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.RR.find_objects(data_product_id1, PRED.hasStream,
None, True)
log.debug('Data product streams1 = %s', stream_ids)
# Retrieve the id of the OUTPUT stream from the out Data Product
dataset_ids, _ = self.RR.find_objects(data_product_id1,
PRED.hasDataset, RT.Dataset,
True)
log.debug('Data set for data_product_id1 = %s', dataset_ids[0])
self.parsed_dataset = dataset_ids[0]
#create the datastore at the beginning of each int test that persists data
dp_obj = IonObject(RT.DataProduct,
name='the raw data',
description='raw stream test')
data_product_id2 = self.DP.create_data_product(
data_product=dp_obj, stream_definition_id=raw_stream_def_id)
log.debug('new dp_id = %s', str(data_product_id2))
self.DAMS.assign_data_product(input_resource_id=instDevice_id,
data_product_id=data_product_id2)
self.DP.activate_data_product_persistence(
data_product_id=data_product_id2)
self.addCleanup(self.DP.suspend_data_product_persistence,
data_product_id2)
# spin up agent
self.IMS.start_instrument_agent_instance(
instrument_agent_instance_id=instAgentInstance_id)
self.addCleanup(self.IMS.stop_instrument_agent_instance,
instrument_agent_instance_id=instAgentInstance_id)
#wait for start
instance_obj = self.IMS.read_instrument_agent_instance(
instAgentInstance_id)
gate = AgentProcessStateGate(self.PDC.read_process, instDevice_id,
ProcessStateEnum.RUNNING)
self.assertTrue(
gate. await (30),
"The instrument agent instance (%s) did not spawn in 30 seconds" %
gate.process_id)
# take snapshot of config
snap_id = self.IMS.save_resource_state(instDevice_id, "xyzzy snapshot")
snap_obj = self.RR.read_attachment(snap_id, include_content=True)
#modify config
instance_obj.driver_config["comms_config"] = "BAD_DATA"
self.RR.update(instance_obj)
#restore config
self.IMS.restore_resource_state(instDevice_id, snap_id)
instance_obj = self.RR.read(instAgentInstance_id)
if "BAD_DATA" == instance_obj.driver_config["comms_config"]:
print "Saved config:"
print snap_obj.content
self.fail("Saved config was not properly restored")
self.assertNotEqual("BAD_DATA",
instance_obj.driver_config["comms_config"])
self.DP.delete_data_product(data_product_id1)
self.DP.delete_data_product(data_product_id2)