def create_lisa_data_dir_tree(oseg=None):
odp = op.expanduser('~/lisa_data/.lisa/')
if not op.exists(odp):
os.makedirs(odp)
# import wget
lisa_icon_path= path(".lisa/LISA256.png")
if not op.exists(lisa_icon_path):
try:
download_file(
"https://raw.githubusercontent.com/mjirik/lisa/master/lisa/icons/LISA256.png",
filename=lisa_icon_path)
# wget.download(
# "https://raw.githubusercontent.com/mjirik/lisa/master/lisa/icons/LISA256.png",
# out=lisa_icon_path)
except:
import traceback
logger.warning('logo download failed')
logger.warning(traceback.format_exc())
if oseg is not None:
# used for server sync
oseg._output_datapath_from_server = op.join(oseg.output_datapath, 'sync', oseg.sftp_username, "from_server/")
# used for server sync
oseg._output_datapath_to_server = op.join(oseg.output_datapath, 'sync', oseg.sftp_username, "to_server/")
odp = oseg.output_datapath
if not op.exists(odp):
os.makedirs(odp)
odp = oseg._output_datapath_from_server
if not op.exists(odp):
os.makedirs(odp)
odp = oseg._output_datapath_to_server
if not op.exists(odp):
os.makedirs(odp)
def __make_icon_osx():
lisa_shortcut = op.expanduser("~/Desktop/lisa")
if not os.path.exists(lisa_shortcut):
with open(lisa_shortcut, 'w') as outfile:
outfile.write(
"\
#!/bin/bash\n\
export PATH=$HOME/miniconda2/bin:$HOME/anaconda2/bin:$HOME/miniconda/bin:$HOME/anaconda/bin:$PATH\n\
lisa"
)
os.chmod(lisa_shortcut,
stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH |
stat.S_IRUSR | stat.S_IRGRP | stat.S_IXOTH |
stat.S_IWUSR | stat.S_IWGRP
)
lisa_icon_path= op.expanduser("~/lisa_data/.lisa/LISA256.icns")
if not os.path.exists(lisa_icon_path):
try:
download_file(
# wget.download(
"https://raw.githubusercontent.com/mjirik/lisa/master/applications/LISA256.icns",
filename=lisa_icon_path
# out=lisa_icon_path
)
except:
logger.warning('logo download failed')
pass
def __make_icon_linux():
# import wget
in_path = op.expanduser("~/lisa_data/.lisa/lisa.desktop.in")
rm_smart(in_path)
lisa_icon_path= op.expanduser("~/lisa_data/.lisa/LISA256.png")
# if not op.exists(in_path):
# try:
# wget.download(
# "https://raw.githubusercontent.com/mjirik/lisa/master/applications/lisa.desktop.in",
# out=in_path)
# except:
# import traceback
# logger.warning('logo download failed')
# logger.warning(traceback.format_exc())
if not op.exists(lisa_icon_path):
try:
download_file(
# wget.download(
"https://raw.githubusercontent.com/mjirik/lisa/master/lisa/icons/LISA256.png",
filename=lisa_icon_path)
# out=lisa_icon_path)
except:
import traceback
logger.warning('logo download failed')
logger.warning(traceback.format_exc())
logger.debug("icon input path:")
logger.debug(in_path)
home_path = os.path.expanduser('~')
if os.path.exists(os.path.join(home_path, 'Desktop')):
desktop_path = os.path.join(home_path, 'Desktop')
elif os.path.exists(os.path.join(home_path, 'Plocha')):
desktop_path = os.path.join(home_path, 'Plocha')
else:
print("Cannot find desktop directory")
logger.error("Cannot find desktop directory")
desktop_path = None
# copy desktop files to desktop
if desktop_path is not None:
out_path = os.path.join(desktop_path, "lisa.desktop")
__make_linux_icon_file(out_path)
# copy desktop files to $HOME/.local/share/applications/
# to be accesable in application menu (Linux)
local_app_path = os.path.join(home_path, '.local/share/applications')
if os.path.exists(local_app_path) and os.path.isdir(local_app_path):
out_path = os.path.join(local_app_path, "lisa.desktop")
__make_linux_icon_file(out_path)
else:
print("Couldnt find $HOME/.local/share/applications/.")
def make_update(dry_run=False):
"""
Update with no projects/lisa directory
:param dry_run:
:return:
"""
import os.path as op
conda_ok = True
print('Updating conda modules')
logger.debug("Updating conda modules")
try:
cmd = [
"conda",
"install",
"--yes",
# "-c", 'luispedro ',
'-c',
'SimpleITK',
"-c",
"menpo",
'-c',
'mjirik',
"-c",
"menpo",
"-c",
"auto",
"lisa"
]
if dry_run:
cmd.append('--dry-run')
subprocess.call(cmd)
except:
logger.warning('Problem with conda update')
logger.warning(traceback.format_exc())
traceback.print_exc()
conda_ok = False
# try:
# install_and_import('wget', '--user')
print('Updating pip modules')
logger.debug("Updating pip modules")
try:
req_txt_path = op.expanduser("~/lisa_data/.lisa/reqirements_pip.txt")
if op.exists(req_txt_path):
os.remove(req_txt_path)
# wget.download(
download_file(
"https://raw.githubusercontent.com/mjirik/lisa/master/requirements_pip.txt",
filename=req_txt_path)
cmd = ["pip", "install", '-U', '--no-deps']
if not conda_ok:
cmd.append('--user')
cmd = cmd + ["-r", req_txt_path]
if dry_run:
cmd.insert(1, '-V')
subprocess.call(cmd)
except:
logger.warning('Problem with pip update')
logger.warning(traceback.format_exc())
traceback.print_exc()
try:
import lisa_data
lisa_data.make_icon()
except:
logger.warning('Problem with icon')
logger.warning(traceback.format_exc())
traceback.print_exc()