def get_associated_objects_json(plan):
""" Gather associated objects to send to destination """
def get_obj_dict(obj):
d = {}
for field in obj._meta.fields:
if field.get_internal_type() not in [
"AutoField",
"ForeignKey",
"OneToOneField",
"ManyToManyField",
]:
d[field.name] = getattr(obj, field.name)
return d
obj_dict = {}
# Samples
samples = plan.experiment.samples.all()
obj_dict["samples"] = []
for sample in samples:
d = get_obj_dict(sample)
obj_dict["samples"].append(d)
# SampleSet
obj_dict["sampleSets"] = []
for sampleSet in plan.sampleSets.all():
sampleSet_dict = get_obj_dict(sampleSet)
sampleSet_dict[
"SampleGroupType_CV_id"] = sampleSet.SampleGroupType_CV_id
sampleSet_dict["libraryPrepInstrumentData"] = (
get_obj_dict(sampleSet.libraryPrepInstrumentData)
if sampleSet.libraryPrepInstrumentData else {})
sampleSet_dict["sampleSetItems"] = []
for setitem in sampleSet.samples.filter(sample__in=samples):
setitem_dict = get_obj_dict(setitem)
setitem_dict["sample__name"] = setitem.sample.name
if setitem.dnabarcode:
setitem_dict["dnabarcode"] = {
"name": setitem.dnabarcode.name,
"id_str": setitem.dnabarcode.id_str,
}
sampleSet_dict["sampleSetItems"].append(setitem_dict)
obj_dict["sampleSets"].append(sampleSet_dict)
# Ion Reporter account
eas = plan.latest_eas
if "IonReporterUploader" in eas.selectedPlugins:
try:
accountId = (eas.selectedPlugins["IonReporterUploader"].get(
"userInput", {}).get("accountId"))
iru_config = Plugin.objects.get(name="IonReporterUploader",
active=True).config
obj_dict["IR_account"] = find_IRU_account(iru_config, accountId)
except Exception:
logger.error(traceback.format_exc())
return json.dumps(obj_dict, cls=LazyDjangoJSONEncoder)
def get_associated_objects_json(plan):
''' Gather associated objects to send to destination '''
def get_obj_dict(obj):
d = {}
for field in obj._meta.fields:
if field.get_internal_type() not in [
'AutoField', 'ForeignKey', 'OneToOneField',
'ManyToManyField'
]:
d[field.name] = getattr(obj, field.name)
return d
obj_dict = {}
# Samples
samples = plan.experiment.samples.all()
obj_dict['samples'] = []
for sample in samples:
d = get_obj_dict(sample)
obj_dict['samples'].append(d)
# SampleSet
obj_dict['sampleSets'] = []
for sampleSet in plan.sampleSets.all():
sampleSet_dict = get_obj_dict(sampleSet)
sampleSet_dict[
'SampleGroupType_CV_id'] = sampleSet.SampleGroupType_CV_id
sampleSet_dict['libraryPrepInstrumentData'] = get_obj_dict(
sampleSet.libraryPrepInstrumentData
) if sampleSet.libraryPrepInstrumentData else {}
sampleSet_dict['sampleSetItems'] = []
for setitem in sampleSet.samples.filter(sample__in=samples):
setitem_dict = get_obj_dict(setitem)
setitem_dict['sample__name'] = setitem.sample.name
if setitem.dnabarcode:
setitem_dict['dnabarcode'] = {
'name': setitem.dnabarcode.name,
'id_str': setitem.dnabarcode.id_str
}
sampleSet_dict['sampleSetItems'].append(setitem_dict)
obj_dict['sampleSets'].append(sampleSet_dict)
# Ion Reporter account
eas = plan.latest_eas
if 'IonReporterUploader' in eas.selectedPlugins:
try:
accountId = eas.selectedPlugins['IonReporterUploader'].get(
'userInput', {}).get('accountId')
iru_config = Plugin.objects.get(name='IonReporterUploader',
active=True).config
obj_dict['IR_account'] = find_IRU_account(iru_config, accountId)
except:
logger.error(traceback.format_exc())
return json.dumps(obj_dict, cls=DjangoJSONEncoder)
def get_associated_objects_json(plan):
''' Gather associated objects to send to destination '''
def get_obj_dict(obj):
d = {}
for field in obj._meta.fields:
if field.get_internal_type() not in ['AutoField', 'ForeignKey', 'OneToOneField', 'ManyToManyField']:
d[field.name] = getattr(obj, field.name)
return d
obj_dict = {}
# Samples
samples = plan.experiment.samples.all()
obj_dict['samples'] = []
for sample in samples:
d = get_obj_dict(sample)
obj_dict['samples'].append(d)
# SampleSet
obj_dict['sampleSets'] = []
for sampleSet in plan.sampleSets.all():
sampleSet_dict = get_obj_dict(sampleSet)
sampleSet_dict['SampleGroupType_CV_id'] = sampleSet.SampleGroupType_CV_id
sampleSet_dict['libraryPrepInstrumentData'] = get_obj_dict(sampleSet.libraryPrepInstrumentData) if sampleSet.libraryPrepInstrumentData else {}
sampleSet_dict['sampleSetItems'] = []
for setitem in sampleSet.samples.filter(sample__in=samples):
setitem_dict = get_obj_dict(setitem)
setitem_dict['sample__name'] = setitem.sample.name
if setitem.dnabarcode:
setitem_dict['dnabarcode'] = {
'name': setitem.dnabarcode.name,
'id_str': setitem.dnabarcode.id_str
}
sampleSet_dict['sampleSetItems'].append(setitem_dict)
obj_dict['sampleSets'].append(sampleSet_dict)
# Ion Reporter account
eas = plan.latest_eas
if 'IonReporterUploader' in eas.selectedPlugins:
try:
accountId = eas.selectedPlugins['IonReporterUploader'].get('userInput', {}).get('accountId')
iru_config = Plugin.objects.get(name='IonReporterUploader', active=True).config
obj_dict['IR_account'] = find_IRU_account(iru_config, accountId)
except:
logger.error(traceback.format_exc())
return json.dumps(obj_dict, cls=DjangoJSONEncoder)