def _validate_textValue_leadingChars(value, displayedTerm):
isValid = False
if value and not validation.is_valid_leading_chars(value):
return isValid, "Error, " + validation.invalid_leading_chars(
displayedTerm)
return True, None
def validate_barcoded_sample_info(
sampleName,
sampleName_label,
sampleExternalId,
sampleExternalId_label,
nucleotideType,
nucleotideType_label,
sampleReference,
sampleReference_label,
runType,
applicationGroupName,
):
errors = []
if not validation.is_valid_chars(sampleName):
errors.append(validation.invalid_chars_error(sampleName_label))
if not validation.is_valid_leading_chars(sampleName):
errors.append(validation.invalid_leading_chars(sampleName_label))
if not validation.is_valid_length(sampleName, MAX_LENGTH_SAMPLE_NAME):
errors.append(
validation.invalid_length_error(sampleName_label,
MAX_LENGTH_SAMPLE_NAME,
sampleName))
sample_id_errors = validate_sample_id(sampleExternalId,
field_label=sampleExternalId_label)
if sample_id_errors:
errors.extend(sample_id_errors)
nucleotideType_errors, sample_nucleotideType = validate_sample_nucleotideType(
nucleotideType,
runType,
applicationGroupName,
field_label=nucleotideType_label)
if nucleotideType_errors:
errors.extend(nucleotideType_errors)
ref_errors, ref_short_name = validate_reference(
sampleReference,
field_label=sampleReference_label,
runType=runType,
applicationGroupName=applicationGroupName,
application_label=ScientificApplication.verbose_name,
)
if ref_errors:
errors.extend(ref_errors)
return errors, ref_short_name, sample_nucleotideType
def validate_sample_name(
value,
field_label,
isTemplate=None,
isTemplate_label=PlanTemplate.verbose_name,
barcodeId=None,
barcodeId_label=ugettext_lazy("workflow.step.kits.fields.barcodeId.label"),
): # TODO: i18n
errors = []
if not value:
if not isTemplate:
errors.append(validation.required_error(field_label))
else:
if isTemplate:
errors.append(
validation.format(
ugettext_lazy(
"template.messages.validation.invalidsamples"),
{"name": isTemplate_label},
)
) # "Invalid input. Sample information cannot be saved in the %(name)s"
if barcodeId:
errors.append(
validation.format(
ugettext_lazy(
"plannedexperiment.messages.validation.nonbarcoded.barcodesetnotrequired"
),
{
"barcodeSetName": barcodeId_label,
"barcodeSetValue": barcodeId
},
)
) # "Invalid input. %(barcodeSetName)s (%(barcodeSetValue)s) should not be provided for non barcoded plan"
if not validation.is_valid_chars(value):
errors.append(validation.invalid_chars_error(field_label))
if not validation.is_valid_leading_chars(value):
errors.append(validation.invalid_leading_chars(field_label))
if not validation.is_valid_length(value, MAX_LENGTH_SAMPLE_NAME):
errors.append(
validation.invalid_length_error(field_label,
MAX_LENGTH_SAMPLE_NAME, value))
return errors
def _validate_textValue_leadingChars(value, displayedTerm):
isValid = False
if value and not validation.is_valid_leading_chars(value):
return isValid, "Error, " + validation.invalid_leading_chars(displayedTerm)
return True, None