def onRun(self, e):
# Run full processing
if e.GetId() == self.tb_btn_test.GetId(): # Not testing right now
self.init_settings()
title = 'Test'
else:
self.init_settings()
title = 'Image Processing'
input_list = []
input_items = self.input_window.input.all_data_images
for key, imageset in input_items.iteritems():
input_list.extend(imageset)
self.proc_window = frm.ProcWindow(self,
-1,
title=title,
target_phil=self.target_phil,
phil=self.iota_phil)
init = InitAll(iver=misc.iota_version, input_list=input_list)
self.proc_window.run(init)
if self.proc_window.good_to_go:
self.term_file = self.proc_window.tmp_abort_file
self.proc_window.Show(True)
def onRun(self, e):
# Run full processing
if e.GetId() == self.tb_btn_test.GetId(): # Not testing right now
self.init_settings()
title = 'Test'
else:
self.init_settings()
title = 'Image Processing'
self.proc_window = frm.ProcWindow(self,
-1,
title=title,
target_phil=self.target_phil,
phil=self.iota_phil)
init = InitAll(iver=misc.iota_version)
self.proc_window.run(init)
if self.proc_window.good_to_go:
self.term_file = self.proc_window.tmp_abort_file
self.proc_window.Show(True)
def onRecovery(self, e):
# Find finished runs and display results
int_folder = os.path.abspath('{}/integration'.format(os.curdir))
if not os.path.isdir(int_folder):
open_dlg = wx.DirDialog(self,
"Choose the integration folder:",
style=wx.DD_DEFAULT_STYLE)
if open_dlg.ShowModal() == wx.ID_OK:
int_folder = open_dlg.GetPath()
open_dlg.Destroy()
else:
open_dlg.Destroy()
return
paths = [os.path.join(int_folder, p) for p in os.listdir(int_folder)]
paths = [p for p in paths if os.path.isdir(p)]
path_dlg = dlg.RecoveryDialog(self)
path_dlg.insert_paths(paths)
if path_dlg.ShowModal() == wx.ID_OK:
self.reset_settings()
selected = path_dlg.selected
recovery_mode = path_dlg.recovery_mode
int_path = selected[1]
init_file = os.path.join(int_path, 'init.cfg')
if os.path.isfile(init_file):
rec_init = ep.load(init_file)
tmp_phil = inp.master_phil.format(
python_object=rec_init.params)
self.iota_phil = self.iota_phil.fetch(source=tmp_phil)
else:
rec_init = InitAll(iver=iota_version)
rec_init.int_base = int_path
rec_init.obj_base = os.path.join(int_path, 'image_objects')
rec_init.fin_base = os.path.join(int_path, 'final')
rec_init.log_base = os.path.join(int_path, 'logs')
rec_init.viz_base = os.path.join(int_path, 'visualization')
rec_init.logfile = os.path.join(int_path, 'iota.log')
with open(rec_init.logfile, 'r') as lf:
lines = lf.readlines()[4:86]
log_phil = ip.parse(''.join(lines))
self.iota_phil = self.iota_phil.fetch(source=log_phil)
rec_init.params = self.iota_phil.extract()
input_entries = [i for i in rec_init.params.input if i != None]
rec_init.input_list = ginp.make_input_list(input_entries)
self.gparams = self.iota_phil.extract()
# Re-populate input window with settings from read-in run (check that
# nothing has been moved)
rec_target_phil_file = os.path.join(rec_init.int_base,
'target.phil')
with open(rec_target_phil_file, 'r') as pf:
rec_target_phil = pf.read()
self.target_phil = rec_target_phil
self.update_input_window()
# Re-open processing window with results of the run
if recovery_mode == 0:
self.proc_window = frm.ProcWindow(self,
-1,
title='Image Processing',
target_phil=rec_target_phil,
phil=self.iota_phil)
self.proc_window.recover(int_path=rec_init.int_base,
init=rec_init,
status=selected[0],
params=self.gparams)
self.proc_window.Show(True)
def onRecovery(self, e):
# Find finished runs and display results
int_folder = os.path.abspath('{}/integration'.format(os.curdir))
if not os.path.isdir(int_folder):
open_dlg = wx.DirDialog(self,
"Choose the integration folder:",
style=wx.DD_DEFAULT_STYLE)
if open_dlg.ShowModal() == wx.ID_OK:
int_folder = open_dlg.GetPath()
open_dlg.Destroy()
else:
open_dlg.Destroy()
return
paths = [os.path.join(int_folder, p) for p in os.listdir(int_folder)]
paths = [p for p in paths if os.path.isdir(p)]
path_dlg = dlg.RecoveryDialog(self)
path_dlg.insert_paths(paths)
if path_dlg.ShowModal() == wx.ID_OK:
self.reset_settings()
selected = path_dlg.selected
int_path = selected[1]
init_file = os.path.join(int_path, 'init.cfg')
if os.path.isfile(init_file):
rec_init = ep.load(init_file)
tmp_phil = inp.master_phil.format(
python_object=rec_init.params)
self.iota_phil = self.iota_phil.fetch(source=tmp_phil)
else:
rec_init = InitAll(iver=iota_version)
rec_init.int_base = int_path
rec_init.obj_base = os.path.join(int_path, 'image_objects')
rec_init.fin_base = os.path.join(int_path, 'final')
rec_init.log_base = os.path.join(int_path, 'logs')
rec_init.viz_base = os.path.join(int_path, 'visualization')
rec_init.logfile = os.path.join(int_path, 'iota.log')
with open(rec_init.logfile, 'r') as lf:
log_phil = ip.parse(''.join(lf.readlines()[4:86]))
self.iota_phil = self.iota_phil.fetch(source=log_phil)
rec_init.params = self.iota_phil.extract()
input_entries = [i for i in rec_init.params.input if i != None]
rec_init.input_list = ginp.make_input_list(input_entries)
self.gparams = self.iota_phil.extract()
# # Test / fix input folders / files
# for inp in self.gparams.input:
# if not os.path.exists(inp):
# error_msg = wx.MessageDialog(None,
# 'INPUT PATH {} NOT FOUND!\n'
# 'Would you like to look for it?'
# ''.format(inp),
# wx.YES_NO | wx.ICON_ERROR)
# if (error_msg.ShowModal() == wx.ID_YES):
# open_dlg = wx.DirDialog(self, "Choose the input folder:",
# style=wx.DD_DEFAULT_STYLE)
# if open_dlg.ShowModal() == wx.ID_OK:
# path = os.path.abspath(open_dlg.GetPath())
# if path not in self.gparams.input:
# self.gparams.input.append(path)
# else:
# return
# else:
# return
#
# # Test / fix output folder
# if not os.path.isdir(self.gparams.output):
# error_msg = wx.MessageDialog(None,
# 'OUTPUT FOLDER {} NOT FOUND!\n'
# 'Would you like to look for it?'
# ''.format(self.gparams.output),
# wx.YES_NO | wx.ICON_ERROR)
# if (error_msg.ShowModal() == wx.ID_YES):
# open_dlg = wx.DirDialog(self, "Choose the output folder:",
# style=wx.DD_DEFAULT_STYLE)
# if open_dlg.ShowModal() == wx.ID_OK:
# self.gparams.output = os.path.abspath(open_dlg.GetPath())
# int_no = rec_init.int_base.split('/')[-1]
# cnv_no = rec_init.conv_base.split('/')[-1]
# rec_init.input_base = self.gparams.input
# rec_init.conv_base = os.path.join(self.gparams.output,
# 'converted_pickles', cnv_no)
# rec_init.int_base = os.path.join(self.gparams.output,
# 'integration', int_no)
# rec_init.fin_base = os.path.join(rec_init.int_base, 'final')
# rec_init.log_base = os.path.join(rec_init.int_base, 'logs')
# rec_init.obj_base = os.path.join(rec_init.int_base, 'image_objects')
# rec_init.viz_base = os.path.join(rec_init.int_base, 'visualization')
# rec_init.logfile = os.path.join(int_path, 'iot.log')
# else:
# return
# else:
# return
# Re-populate input window with settings from read-in run (check that
# nothing has been moved)
rec_target_phil_file = os.path.join(rec_init.int_base,
'target.phil')
with open(rec_target_phil_file, 'r') as pf:
rec_target_phil = pf.read()
self.target_phil = rec_target_phil
self.update_input_window()
# Re-open processing window with results of the run
self.proc_window = frm.ProcWindow(self,
-1,
title='Image Processing',
target_phil=rec_target_phil,
phil=self.iota_phil)
self.proc_window.recover(int_path=rec_init.int_base,
init=rec_init,
status=selected[0],
params=self.gparams)
self.proc_window.Show(True)