def test_phil(self, filepath):
''' Tests incoming PHIL file to try and determine what it's for '''
import iotbx.phil as ip
try:
test_phil = ip.parse(open(filepath).read())
# Test if IOTA parameter file
from iota.components.iota_input import master_phil as iota_phil
new_phil, unused = iota_phil.fetch(sources=[test_phil],
track_unused_definitions=True)
if len(unused) == 0:
return 'IOTA settings'
# Test if PRIME parameter file
from prime.postrefine.mod_input import master_phil as prime_phil
new_phil, unused = prime_phil.fetch(sources=[test_phil],
track_unused_definitions=True)
if len(unused) == 0:
return 'PRIME settings'
# Test if LABELIT target file
from labelit.phil_preferences import iotbx_defs, libtbx_defs
labelit_phil = ip.parse(input_string=iotbx_defs + libtbx_defs,
process_includes=True)
new_phil, unused = labelit_phil.fetch(sources=[test_phil],
track_unused_definitions=True)
if len(unused) == 0:
return 'LABELIT target'
# Test if DIALS target file
from dials.command_line.stills_process import control_phil_str, \
dials_phil_str
dials_phil = ip.parse(control_phil_str + dials_phil_str,
process_includes=True)
new_phil, unused = dials_phil.fetch(sources=[test_phil],
track_unused_definitions=True)
if len(unused) == 0:
return 'DIALS target'
else:
return 'text'
except Exception:
return 'text'
def test_phil(self, filepath):
""" Tests incoming PHIL file to try and determine what it's for """
from iotbx import phil as ip
from iotbx.file_reader import any_file as af
try:
if af(filepath).file_type == 'phil':
test_phil = ip.parse(open(filepath).read())
else:
test_phil = None
except RuntimeError: # If not a PHIL file or a bad PHIL file
return 'text'
else:
if test_phil:
# Test if IOTA parameter file
from iota.components.iota_input import master_phil as iota_phil
new_phil, unused = iota_phil.fetch(
sources=[test_phil], track_unused_definitions=True)
len_test = len(
test_phil.all_definitions(suppress_multiple=True))
percent_fit = (1 - len(unused) / len_test) * 100
if percent_fit >= 50:
return 'IOTA settings'
# Test if PRIME parameter file
from prime.postrefine.mod_input import master_phil as prime_phil
new_phil, unused = prime_phil.fetch(
sources=[test_phil], track_unused_definitions=True)
len_test = len(
test_phil.all_definitions(suppress_multiple=True))
percent_fit = (1 - len(unused) / len_test) * 100
if percent_fit >= 50:
return 'PRIME settings'
# Test if LABELIT target file (LABELIT not always available)
try:
from labelit.phil_preferences import iotbx_defs, libtbx_defs
except ImportError:
pass
else:
labelit_phil = ip.parse(input_string=iotbx_defs +
libtbx_defs,
process_includes=True)
new_phil, unused = labelit_phil.fetch(
sources=[test_phil], track_unused_definitions=True)
len_test = len(
test_phil.all_definitions(suppress_multiple=True))
percent_fit = (1 - len(unused) / len_test) * 100
if percent_fit >= 50:
return 'LABELIT target'
# Test if DIALS target file
from dials.command_line.stills_process import control_phil_str, \
dials_phil_str
dials_phil = ip.parse(control_phil_str + dials_phil_str,
process_includes=True)
new_phil, unused = dials_phil.fetch(
sources=[test_phil], track_unused_definitions=True)
len_test = len(
test_phil.all_definitions(suppress_multiple=True))
percent_fit = (1 - len(unused) / len_test) * 100
if percent_fit >= 50:
return 'DIALS target'
else:
return 'text'
else:
return 'text'