def setUp(self):
data = np.array([[1, 2, 3, 4, 5], [2, 3, 4, 5, 6], [3, 4, 5, 6, 7],
[4, 5, 6, 7, 9]],
dtype=np.float32)
cube = iris.cube.Cube(data, standard_name="x_wind", units="km/h")
self.lonlat_cs = iris.coord_systems.GeogCS(6371229)
cube.add_dim_coord(
DimCoord(np.arange(4, dtype=np.float32) * 90 - 180,
'longitude',
units='degrees',
circular=True,
coord_system=self.lonlat_cs), 0)
cube.add_dim_coord(
DimCoord(np.arange(5, dtype=np.float32) * 45 - 90,
'latitude',
units='degrees',
coord_system=self.lonlat_cs), 1)
cube.add_aux_coord(
DimCoord(np.arange(4, dtype=np.float32),
long_name='x',
units='count',
circular=True), 0)
cube.add_aux_coord(
DimCoord(np.arange(5, dtype=np.float32),
long_name='y',
units='count'), 1)
self.cube = cube
def test_dim_to_aux(self):
cube = self.simple2d_cube
other = iris.coords.DimCoord([1, 2, 3, 4], long_name='was_dim')
cube.add_aux_coord(other, 0)
r = iris.analysis.interpolate.linear(cube, [('dim1', [7, 3, 5])])
normalise_order(r)
self.assertCML(r, ('analysis', 'interpolation', 'linear', 'dim_to_aux.cml'))
def _make_cube(
self,
data,
dtype=np.dtype("int32"),
fill_value=None,
mask=None,
lazy=False,
N=3,
):
x = np.arange(N)
y = np.arange(N)
payload = self._make_data(data,
dtype=dtype,
fill_value=fill_value,
mask=mask,
lazy=lazy,
N=N)
cube = iris.cube.Cube(payload)
lat = DimCoord(y, standard_name="latitude", units="degrees")
cube.add_dim_coord(lat, 0)
lon = DimCoord(x, standard_name="longitude", units="degrees")
cube.add_dim_coord(lon, 1)
height = DimCoord(data, standard_name="height", units="m")
cube.add_aux_coord(height)
return cube
def _dereference_args(factory, reference_targets, regrid_cache, cube):
"""Converts all the arguments for a factory into concrete coordinates."""
args = []
for arg in factory.args:
if isinstance(arg, Reference):
if arg.name in reference_targets:
src = reference_targets[arg.name].as_cube()
# If necessary, regrid the reference cube to
# match the grid of this cube.
src = _ensure_aligned(regrid_cache, src, cube)
if src is not None:
new_coord = iris.coords.AuxCoord(src.data,
src.standard_name,
src.long_name,
src.var_name,
src.units,
attributes=src.attributes)
dims = [cube.coord_dims(src_coord)[0]
for src_coord in src.dim_coords]
cube.add_aux_coord(new_coord, dims)
args.append(new_coord)
else:
raise _ReferenceError('Unable to regrid reference for'
' {!r}'.format(arg.name))
else:
raise _ReferenceError("The source data contains no "
"field(s) for {!r}.".format(arg.name))
else:
# If it wasn't a Reference, then arg is a dictionary
# of keyword arguments for cube.coord(...).
args.append(cube.coord(**arg))
return args
def test_bounded_level(self):
cube = iris.load_cube(
tests.get_data_path(("GRIB", "uk_t", "uk_t.grib2")))
# Changing pressure to altitude due to grib api bug:
# https://github.com/SciTools/iris/pull/715#discussion_r5901538
cube.remove_coord("pressure")
cube.add_aux_coord(
iris.coords.AuxCoord(
1030.0,
long_name="altitude",
units="m",
bounds=np.array([111.0, 1949.0]),
))
with self.temp_filename(".grib2") as testfile:
iris.save(cube, testfile)
with open(testfile, "rb") as saved_file:
g = gribapi.grib_new_from_file(saved_file)
self.assertEqual(
gribapi.grib_get_double(g,
"scaledValueOfFirstFixedSurface"),
111.0,
)
self.assertEqual(
gribapi.grib_get_double(g,
"scaledValueOfSecondFixedSurface"),
1949.0,
)
def test_dim_to_aux(self):
cube = self.simple2d_cube
other = iris.coords.DimCoord([1, 2, 3, 4], long_name='was_dim')
cube.add_aux_coord(other, 0)
r = iintrp.linear(cube, [('dim1', [7, 3, 5])])
normalise_order(r)
self.assertCML(r, ('analysis', 'interpolation', 'linear', 'dim_to_aux.cml'))
def _dereference_args(factory, reference_targets, regrid_cache, cube):
"""Converts all the arguments for a factory into concrete coordinates."""
args = []
for arg in factory.args:
if isinstance(arg, Reference):
if arg.name in reference_targets:
src = reference_targets[arg.name].as_cube()
# If necessary, regrid the reference cube to
# match the grid of this cube.
src = _ensure_aligned(regrid_cache, src, cube)
if src is not None:
new_coord = iris.coords.AuxCoord(src.data,
src.standard_name,
src.long_name,
src.var_name,
src.units,
attributes=src.attributes)
dims = [cube.coord_dims(src_coord)[0]
for src_coord in src.dim_coords]
cube.add_aux_coord(new_coord, dims)
args.append(new_coord)
else:
raise _ReferenceError('Unable to regrid reference for'
' {!r}'.format(arg.name))
else:
raise _ReferenceError("The file(s) {{filenames}} don't contain"
" field(s) for {!r}.".format(arg.name))
else:
# If it wasn't a Reference, then arg is a dictionary
# of keyword arguments for cube.coord(...).
args.append(cube.coord(**arg))
return args
def setUp(self):
data = np.array([[1, 2, 3, 4, 5], [2, 3, 4, 5, 6], [3, 4, 5, 6, 7], [4, 5, 6, 7, 9]], dtype=np.float32)
cube = iris.cube.Cube(data, standard_name="x_wind", units="km/h")
self.lonlat_cs = iris.coord_systems.GeogCS(6371229)
cube.add_dim_coord(
DimCoord(
np.arange(4, dtype=np.float32) * 90 - 180,
"longitude",
units="degrees",
circular=True,
coord_system=self.lonlat_cs,
),
0,
)
cube.add_dim_coord(
DimCoord(
np.arange(5, dtype=np.float32) * 45 - 90, "latitude", units="degrees", coord_system=self.lonlat_cs
),
1,
)
cube.add_aux_coord(DimCoord(np.arange(4, dtype=np.float32), long_name="x", units="count", circular=True), 0)
cube.add_aux_coord(DimCoord(np.arange(5, dtype=np.float32), long_name="y", units="count"), 1)
self.cube = cube
def test_circular_vs_non_circular_coord(self):
cube = self.simple2d_cube_circular
other = iris.coords.AuxCoord([10, 6, 7, 4], long_name='other')
cube.add_aux_coord(other, 1)
samples = [0, 60, 300]
r = iris.analysis.interpolate.linear(cube, [('theta', samples)])
self.assertCML(r, ('analysis', 'interpolation', 'linear', 'circular_vs_non_circular.cml'))
def build_cube(data, spherical=False):
"""
Create a cube suitable for testing.
"""
cube = iris.cube.Cube(data, standard_name="x_wind", units="km/h")
nx = data.shape[-1]
ny = data.shape[-2]
nz = data.shape[-3] if data.ndim > 2 else None
dimx = data.ndim - 1
dimy = data.ndim - 2
dimz = data.ndim - 3 if data.ndim > 2 else None
if spherical:
hcs = iris.coord_systems.GeogCS(6321)
cube.add_dim_coord(DimCoord(np.arange(-180, 180, 360./nx, dtype=np.float32), 'longitude', units='degrees', coord_system=hcs, circular=True), dimx)
cube.add_dim_coord(DimCoord(np.arange(-90, 90, 180./ny, dtype=np.float32), 'latitude', units='degrees',coord_system=hcs), dimy)
else:
cube.add_dim_coord(DimCoord(np.arange(nx, dtype=np.float32) * 2.21 + 2, 'projection_x_coordinate', units='meters'), dimx)
cube.add_dim_coord(DimCoord(np.arange(ny, dtype=np.float32) * 25 -50, 'projection_y_coordinate', units='meters'), dimy)
if nz is None:
cube.add_aux_coord(DimCoord(np.array([10], dtype=np.float32), long_name='z', units='meters', attributes={"positive":"up"}))
else:
cube.add_dim_coord(DimCoord(np.arange(nz, dtype=np.float32) * 2, long_name='z', units='meters', attributes={"positive":"up"}), dimz)
return cube
def test_simple_intersect(self):
cube = iris.cube.Cube(np.array([[1,2,3,4,5],
[2,3,4,5,6],
[3,4,5,6,7],
[4,5,6,7,8],
[5,6,7,8,9]], dtype=np.int32))
lonlat_cs = iris.coord_systems.RotatedGeogCS(10, 20)
cube.add_dim_coord(iris.coords.DimCoord(np.arange(5, dtype=np.float32) * 90 - 180, 'longitude', units='degrees', coord_system=lonlat_cs), 1)
cube.add_dim_coord(iris.coords.DimCoord(np.arange(5, dtype=np.float32) * 45 - 90, 'latitude', units='degrees', coord_system=lonlat_cs), 0)
cube.add_aux_coord(iris.coords.DimCoord(points=np.int32(11), long_name='pressure', units='Pa'))
cube.rename("temperature")
cube.units = "K"
cube2 = iris.cube.Cube(np.array([[1,2,3,4,5],
[2,3,4,5,6],
[3,4,5,6,7],
[4,5,6,7,8],
[5,6,7,8,50]], dtype=np.int32))
lonlat_cs = iris.coord_systems.RotatedGeogCS(10, 20)
cube2.add_dim_coord(iris.coords.DimCoord(np.arange(5, dtype=np.float32) * 90, 'longitude', units='degrees', coord_system=lonlat_cs), 1)
cube2.add_dim_coord(iris.coords.DimCoord(np.arange(5, dtype=np.float32) * 45 - 90, 'latitude', units='degrees', coord_system=lonlat_cs), 0)
cube2.add_aux_coord(iris.coords.DimCoord(points=np.int32(11), long_name='pressure', units='Pa'))
cube2.rename("")
r = iris.analysis.maths.intersection_of_cubes(cube, cube2)
self.assertCML(r, ('cdm', 'test_simple_cube_intersection.cml'))
def _cube_with_forecast(self):
cube = self._cube_time_no_forecast()
cube.add_aux_coord(
iris.coords.AuxCoord(np.array([6], dtype=np.int32),
'forecast_period',
units='hours'))
return cube
def _make_cube(self, a, b, data=0, a_dim=False, b_dim=False):
cube_data = np.empty((4, 5), dtype=np.float32)
cube_data[:] = data
cube = iris.cube.Cube(cube_data)
cube.add_dim_coord(
DimCoord(
np.array([0, 1, 2, 3, 4], dtype=np.int32),
long_name="x",
units="1",
),
1,
)
cube.add_dim_coord(
DimCoord(
np.array([0, 1, 2, 3], dtype=np.int32),
long_name="y",
units="1",
),
0,
)
for name, value, dim in zip(["a", "b"], [a, b], [a_dim, b_dim]):
dtype = np.str if isinstance(value, str) else np.float32
ctype = DimCoord if dim else AuxCoord
coord = ctype(
np.array([value], dtype=dtype), long_name=name, units="1"
)
cube.add_aux_coord(coord)
return cube
def build_cube(data, spherical=False):
"""
Create a cube suitable for testing.
"""
cube = iris.cube.Cube(data, standard_name="x_wind", units="km/h")
nx = data.shape[-1]
ny = data.shape[-2]
nz = data.shape[-3] if data.ndim > 2 else None
dimx = data.ndim - 1
dimy = data.ndim - 2
dimz = data.ndim - 3 if data.ndim > 2 else None
if spherical:
hcs = iris.coord_systems.LatLonCS( iris.coord_systems.SpheroidDatum(label="Tiny Earth", semi_major_axis=6321, flattening=0.0, units="m"),
iris.coord_systems.PrimeMeridian(), iris.coord_systems.GeoPosition(90, 0), "reference_longitude?")
cube.add_dim_coord(DimCoord(numpy.arange(-180, 180, 360./nx, dtype=numpy.float32), 'longitude', units='degrees', coord_system=hcs, circular=True), dimx)
cube.add_dim_coord(DimCoord(numpy.arange(-90, 90, 180./ny, dtype=numpy.float32), 'latitude', units='degrees',coord_system=hcs), dimy)
else:
hcs = iris.coord_systems.HorizontalCS("Cartesian Datum?")
cube.add_dim_coord(DimCoord(numpy.arange(nx, dtype=numpy.float32) * 2.21 + 2, 'projection_x_coordinate', units='meters', coord_system=hcs), dimx)
cube.add_dim_coord(DimCoord(numpy.arange(ny, dtype=numpy.float32) * 25 -50, 'projection_y_coordinate', units='meters', coord_system=hcs), dimy)
if nz is None:
cube.add_aux_coord(DimCoord(numpy.array([10], dtype=numpy.float32), long_name='z', units='meters', attributes={"positive":"up"}))
else:
cube.add_dim_coord(DimCoord(numpy.arange(nz, dtype=numpy.float32) * 2, long_name='z', units='meters', attributes={"positive":"up"}), dimz)
return cube
def _make_cube(self, a, b, c, d, data=0):
cube_data = np.empty((4, 5), dtype=np.float32)
cube_data[:] = data
cube = iris.cube.Cube(cube_data)
cube.add_dim_coord(
DimCoord(
np.array([0, 1, 2, 3, 4], dtype=np.int32),
long_name="x",
units="1",
),
1,
)
cube.add_dim_coord(
DimCoord(
np.array([0, 1, 2, 3], dtype=np.int32),
long_name="y",
units="1",
),
0,
)
for name, value in zip(["a", "b", "c", "d"], [a, b, c, d]):
dtype = np.str if isinstance(value, str) else np.float32
cube.add_aux_coord(
AuxCoord(
np.array([value], dtype=dtype), long_name=name, units="1"
)
)
return cube
def calc(names, cubelist, levels=None):
"""Wrapper function to ``calculate`` with the option to interpolate to a
level
Args:
names (str or list[str]): The CF standard name(s) of the
variable(s) to be calculated.
cubelist (iris.cube.CubeList): Contains either the requested variable or
the variables required to calculate the requested variable.
levels (tuple or None): The name and levels to interpolate the
requested variable to. Default is None.
Returns:
iris.cube.Cube or iris.cube.CubeList: The variable(s) requested.
Optionally interpolated to the given level
"""
if type(names) == str:
names = [names]
# Call calculate to get the cube
cubes = [calculate(name, cubelist) for name in names]
# Return the cube if interpolation is not requested
if levels is None:
if len(names) == 1:
return cubes[0]
else:
return iris.cube.CubeList(cubes)
else:
output = iris.cube.CubeList()
# Extract the coordinate requested
coord_name, values = levels
for cube in cubes:
# Extract the coordinate from the cubes
try:
coord = cube.coord(coord_name)
# Alternatively use a cube from the cubelist
except iris.exceptions.CoordinateNotFoundError:
coord = calculate(coord_name, cubelist)
coord = grid.make_coord(coord)
cube.add_aux_coord(coord, range(cube.ndim))
# Interpolate to the requested coordinate levels
if coord.points.ndim == 1:
result = cube.interpolate([(coord_name, values)],
iris.analysis.Linear())
else:
result = interpolate.to_level(cube, **{coord_name: values})
output.append(result)
if len(names) == 1:
return output[0]
else:
return output
def setUp(self):
cube = stock.simple_3d_w_multidim_coords()
cube.add_aux_coord(iris.coords.DimCoord(np.arange(2), 'height'), 0)
cube.add_dim_coord(iris.coords.DimCoord(np.arange(3), 'latitude'), 1)
cube.add_dim_coord(iris.coords.DimCoord(np.arange(4), 'longitude'), 2)
self.data = np.arange(24).reshape(2, 3, 4).astype(np.float32)
cube.data = self.data
self.cube = cube
def test_cube_summary_alignment(self):
# Test the cube summary dimension alignment and coord name clipping
cube = iris.tests.stock.simple_1d()
aux = iris.coords.AuxCoord(range(11), long_name='This is a really, really, really long long_name that requires to be clipped because it is too long')
cube.add_aux_coord(aux, 0)
aux = iris.coords.AuxCoord(range(11), long_name='This is a short long_name')
cube.add_aux_coord(aux, 0)
self.assertString(str(cube), ('cdm', 'str_repr', 'simple.__str__.txt'))
def setUp(self):
cube = stock.simple_3d_w_multidim_coords()
cube.add_aux_coord(iris.coords.DimCoord(range(2), 'height'), 0)
cube.add_dim_coord(iris.coords.DimCoord(range(3), 'latitude'), 1)
cube.add_dim_coord(iris.coords.DimCoord(range(4), 'longitude'), 2)
self.data = np.arange(24).reshape(2, 3, 4).astype(np.float32)
cube.data = self.data
self.cube = cube
def test_circular_vs_non_circular_coord(self):
cube = self.simple2d_cube_circular
other = iris.coords.AuxCoord([10, 6, 7, 4], long_name='other')
cube.add_aux_coord(other, 1)
samples = [0, 60, 300]
r = iintrp.linear(cube, [('theta', samples)])
normalise_order(r)
self.assertCML(r, ('analysis', 'interpolation', 'linear', 'circular_vs_non_circular.cml'))
def test_cube_summary_alignment(self):
# Test the cube summary dimension alignment and coord name clipping
cube = iris.tests.stock.simple_1d()
aux = iris.coords.AuxCoord(range(11), long_name='This is a really, really, really long long_name that requires to be clipped because it is too long')
cube.add_aux_coord(aux, 0)
aux = iris.coords.AuxCoord(range(11), long_name='This is a short long_name')
cube.add_aux_coord(aux, 0)
self.assertString(str(cube), ('cdm', 'str_repr', 'simple.__str__.txt'))
def test_weighted_mean_little(self):
data = np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9]], dtype=np.float32)
weights = np.array([[9, 8, 7], [6, 5, 4], [3, 2, 1]], dtype=np.float32)
cube = iris.cube.Cube(data, long_name="test_data", units="1")
hcs = iris.coord_systems.GeogCS(6371229)
lat_coord = iris.coords.DimCoord(np.array([1, 2, 3], dtype=np.float32),
long_name="lat",
units="1",
coord_system=hcs)
lon_coord = iris.coords.DimCoord(np.array([1, 2, 3], dtype=np.float32),
long_name="lon",
units="1",
coord_system=hcs)
cube.add_dim_coord(lat_coord, 0)
cube.add_dim_coord(lon_coord, 1)
cube.add_aux_coord(
iris.coords.AuxCoord(np.arange(3, dtype=np.float32),
long_name="dummy",
units=1), 1)
self.assertCML(cube, ('analysis', 'weighted_mean_source.cml'))
a = cube.collapsed('lat', iris.analysis.MEAN, weights=weights)
# np.ma.average doesn't apply type promotion rules in some versions,
# and instead makes the result type float64. To ignore that case we
# fix up the dtype here if it is promotable from float32. We still want
# to catch cases where there is a loss of precision however.
if a.dtype > np.float32:
a.data = a.data.astype(np.float32)
self.assertCMLApproxData(a, ('analysis', 'weighted_mean_lat.cml'))
b = cube.collapsed(lon_coord, iris.analysis.MEAN, weights=weights)
if b.dtype > np.float32:
b.data = b.data.astype(np.float32)
b.data = np.asarray(b.data)
self.assertCMLApproxData(b, ('analysis', 'weighted_mean_lon.cml'))
self.assertEqual(b.coord('dummy').shape, (1, ))
# test collapsing multiple coordinates (and the fact that one of the coordinates isn't the same coordinate instance as on the cube)
c = cube.collapsed([lat_coord[:], lon_coord],
iris.analysis.MEAN,
weights=weights)
if c.dtype > np.float32:
c.data = c.data.astype(np.float32)
self.assertCMLApproxData(c, ('analysis', 'weighted_mean_latlon.cml'))
self.assertEqual(c.coord('dummy').shape, (1, ))
# Check new coord bounds - made from points
self.assertArrayEqual(c.coord('lat').bounds, [[1, 3]])
# Check new coord bounds - made from bounds
cube.coord('lat').bounds = [[0.5, 1.5], [1.5, 2.5], [2.5, 3.5]]
c = cube.collapsed(['lat', 'lon'], iris.analysis.MEAN, weights=weights)
self.assertArrayEqual(c.coord('lat').bounds, [[0.5, 3.5]])
cube.coord('lat').bounds = None
# Check there was no residual change
self.assertCML(cube, ('analysis', 'weighted_mean_source.cml'))
def Eady(theta,
u,
P,
pressure_levels=(85000, 40000),
theta_0=iris.cube.Cube(300, units='K')):
r"""Calculate the Eady growth rate
:math:`\sigma = 0.31 \frac{f}{N} |\frac{dU}{dz}|`
Where :math:`f = 2 \Omega sin(\phi)`
and :math:`N^2 = \frac{g}{\theta_0} \frac{d \theta}{dz}`
Args:
theta (iris.cube.Cube): Air potential temperature
u (iris.cube.Cube): Zonal wind speed
P (iris.cube.Cube): Air pressure
pressure_levels:
theta_0:
Returns:
iris.cube.Cube: Eady growth rate
"""
# Calculate Coriolis parameter
f = coriolis_parameter(theta)
# Extract altitude as a cube
z = grid.make_cube(P, 'altitude')
# Add pressure as a coordinate to the cubes
P = grid.make_coord(P)
for cube in (theta, u, z):
cube.add_aux_coord(P, [0, 1, 2])
# Interpolate variables to pressure levels
theta = interpolate.to_level(theta, air_pressure=pressure_levels)
u = interpolate.to_level(u, air_pressure=pressure_levels)
z = interpolate.to_level(z, air_pressure=pressure_levels)
# Calculate the Brunt-Vaisala frequency
dtheta_dz = calculus.multidim(theta, z, 'z')
N_sq = dtheta_dz * (constants.g / theta_0)
N_sq.units = 's-2'
N = N_sq**0.5
# Calclate the wind shear
du_dz = calculus.multidim(u, z, P.name())
du_dz.data = np.abs(du_dz.data)
# Calculate the Eady index
sigma = 0.31 * (du_dz / N) * f
return sigma
def test_irregular(self):
cube = self._load_basic()
lat_coord = cube.coord("latitude")
cube.remove_coord("latitude")
new_lats = np.append(lat_coord.points[:-1], lat_coord.points[0]) # Irregular
cube.add_aux_coord(iris.coords.AuxCoord(new_lats, "latitude", units="degrees", coord_system=lat_coord.coord_system), 0)
saved_grib = iris.util.create_temp_filename(suffix='.grib2')
self.assertRaises(iris.exceptions.TranslationError, iris.save, cube, saved_grib)
os.remove(saved_grib)
def _makecube(self, y, cm=False, av=False):
cube = iris.cube.Cube([0, 0])
cube.add_dim_coord(iris.coords.DimCoord([0, 1], long_name="x"), 0)
cube.add_aux_coord(iris.coords.DimCoord(y, long_name="y"))
if cm:
cube.add_cell_measure(
iris.coords.CellMeasure([1, 1], long_name="foo"), 0)
if av:
cube.add_ancillary_variable(
iris.coords.AncillaryVariable([1, 1], long_name="bar"), 0)
return cube
def test_irregular(self):
cube = self._load_basic()
lat_coord = cube.coord("latitude")
cube.remove_coord("latitude")
new_lats = np.append(lat_coord.points[:-1], lat_coord.points[0]) # Irregular
cube.add_aux_coord(iris.coords.AuxCoord(new_lats, "latitude", units="degrees", coord_system=lat_coord.coord_system), 0)
saved_grib = iris.util.create_temp_filename(suffix='.grib2')
self.assertRaises(iris.exceptions.TranslationError, iris.save, cube, saved_grib)
os.remove(saved_grib)
def _cube_time_no_forecast(self):
cube = self._lat_lon_cube_no_time()
unit = iris.unit.Unit('hours since epoch',
calendar=iris.unit.CALENDAR_GREGORIAN)
dt = datetime.datetime(2010, 12, 31, 12, 0)
cube.add_aux_coord(
iris.coords.AuxCoord(np.array([unit.date2num(dt)],
dtype=np.float64),
'time',
units=unit))
return cube
def test_stats_type_max(self, mock_set):
grib = None
cube = iris.cube.Cube(np.array([1.0]))
time_unit = Unit("hours since 1970-01-01 00:00:00")
time_coord = iris.coords.DimCoord([0.0],
bounds=[0.0, 1],
standard_name="time",
units=time_unit)
cube.add_aux_coord(time_coord, ())
cube.add_cell_method(iris.coords.CellMethod("minimum", time_coord))
product_definition_template_8(cube, grib)
mock_set.assert_any_call(grib, "typeOfStatisticalProcessing", 3)
def test_stats_type_max(self, mock_set_long):
grib = None
cube = iris.cube.Cube(np.array([1.0]))
time_unit = iris.unit.Unit('hours since 1970-01-01 00:00:00')
time_coord = iris.coords.DimCoord([0.0],
bounds=[0.0, 1],
standard_name='time',
units=time_unit)
cube.add_aux_coord(time_coord, ())
cube.add_cell_method(iris.coords.CellMethod('minimum', time_coord))
grib_save_rules.type_of_statistical_processing(cube, grib, time_coord)
mock_set_long.assert_any_call(grib, "typeOfStatisticalProcessing", 3)
def _make_cube(self, a, b, c, d, data=0):
cube_data = np.empty((4, 5), dtype=np.float32)
cube_data[:] = data
cube = iris.cube.Cube(cube_data)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3, 4], dtype=np.int32), long_name="x", units="1"), 1)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3], dtype=np.int32), long_name="y", units="1"), 0)
for name, value in zip(["a", "b", "c", "d"], [a, b, c, d]):
dtype = np.str if isinstance(value, six.string_types) else np.float32
cube.add_aux_coord(AuxCoord(np.array([value], dtype=dtype), long_name=name, units="1"))
return cube
def test_stats_type_max(self, mock_set_long):
grib = None
cube = iris.cube.Cube(np.array([1.0]))
time_unit = iris.unit.Unit('hours since 1970-01-01 00:00:00')
time_coord = iris.coords.DimCoord([0.0],
bounds=[0.0, 1],
standard_name='time',
units=time_unit)
cube.add_aux_coord(time_coord, ())
cube.add_cell_method(iris.coords.CellMethod('minimum', time_coord))
grib_save_rules.type_of_statistical_processing(cube, grib, time_coord)
mock_set_long.assert_any_call(grib, "typeOfStatisticalProcessing", 3)
def test_stats_type_min(self, mock_set):
grib = None
cube = iris.cube.Cube(np.array([1.0]))
time_unit = cf_units.Unit('hours since 1970-01-01 00:00:00')
time_coord = iris.coords.DimCoord([0.0],
bounds=[0.0, 1],
standard_name='time',
units=time_unit)
cube.add_aux_coord(time_coord, ())
cube.add_cell_method(iris.coords.CellMethod('maximum', time_coord))
grib_save_rules.product_definition_template_8(cube, grib)
mock_set.assert_any_call(grib, "typeOfStatisticalProcessing", 2)
def test_stats_type_min(self, mock_set):
grib = None
cube = iris.cube.Cube(np.array([1.0]))
time_unit = cf_units.Unit('hours since 1970-01-01 00:00:00')
time_coord = iris.coords.DimCoord([0.0],
bounds=[0.0, 1],
standard_name='time',
units=time_unit)
cube.add_aux_coord(time_coord, ())
cube.add_cell_method(iris.coords.CellMethod('maximum', time_coord))
grib_save_rules.product_definition_template_8(cube, grib)
mock_set.assert_any_call(grib, "typeOfStatisticalProcessing", 2)
def test_altitude_point(self, mock_set):
grib = None
cube = iris.cube.Cube([1, 2, 3, 4, 5])
cube.add_aux_coord(iris.coords.AuxCoord([12345], "altitude", units="m"))
grib_save_rules.set_fixed_surfaces(cube, grib)
mock_set.assert_any_call(grib, "typeOfFirstFixedSurface", 102)
mock_set.assert_any_call(grib, "scaleFactorOfFirstFixedSurface", 0)
mock_set.assert_any_call(grib, "scaledValueOfFirstFixedSurface", 12345)
mock_set.assert_any_call(grib, "typeOfSecondFixedSurface", -1)
mock_set.assert_any_call(grib, "scaleFactorOfSecondFixedSurface", 255)
mock_set.assert_any_call(grib, "scaledValueOfSecondFixedSurface", -1)
def test_bounded_altitude_feet(self):
cube = iris.cube.Cube([0])
cube.add_aux_coord(iris.coords.AuxCoord(
1500.0, long_name='altitude', units='ft',
bounds=np.array([1000.0, 2000.0])))
grib = gribapi.grib_new_from_samples("GRIB2")
grib_save_rules.non_hybrid_surfaces(cube, grib)
self.assertEqual(
gribapi.grib_get_double(grib, "scaledValueOfFirstFixedSurface"),
304.0)
self.assertEqual(
gribapi.grib_get_double(grib, "scaledValueOfSecondFixedSurface"),
609.0)
def test_altitude_point(self, mock_set_long):
grib = None
cube = iris.cube.Cube([1,2,3,4,5])
cube.add_aux_coord(iris.coords.AuxCoord([12345], "altitude", units="m"))
grib_save_rules.non_hybrid_surfaces(cube, grib)
mock_set_long.assert_any_call(grib, "typeOfFirstFixedSurface", 102)
mock_set_long.assert_any_call(grib, "scaleFactorOfFirstFixedSurface", 0)
mock_set_long.assert_any_call(grib, "scaledValueOfFirstFixedSurface", 12345)
mock_set_long.assert_any_call(grib, "typeOfSecondFixedSurface", -1)
mock_set_long.assert_any_call(grib, "scaleFactorOfSecondFixedSurface", 255)
mock_set_long.assert_any_call(grib, "scaledValueOfSecondFixedSurface", -1)
def test_height_point(self, mock_set_long):
grib = None
cube = iris.cube.Cube([1, 2, 3, 4, 5])
cube.add_aux_coord(iris.coords.AuxCoord([12345], "height", units="m"))
grib_save_rules.non_hybrid_surfaces(cube, grib)
mock_set_long.assert_any_call(grib, "typeOfFirstFixedSurface", 103)
mock_set_long.assert_any_call(grib, "scaleFactorOfFirstFixedSurface", 0)
mock_set_long.assert_any_call(grib, "scaledValueOfFirstFixedSurface", 12345)
mock_set_long.assert_any_call(grib, "typeOfSecondFixedSurface", -1)
mock_set_long.assert_any_call(grib, "scaleFactorOfSecondFixedSurface", 255)
mock_set_long.assert_any_call(grib, "scaledValueOfSecondFixedSurface", -1)
def test_height_point(self, mock_set):
grib = None
cube = iris.cube.Cube([1, 2, 3, 4, 5])
cube.add_aux_coord(iris.coords.AuxCoord([12345], "height", units="m"))
grib_save_rules.set_fixed_surfaces(cube, grib)
mock_set.assert_any_call(grib, "typeOfFirstFixedSurface", 103)
mock_set.assert_any_call(grib, "scaleFactorOfFirstFixedSurface", 0)
mock_set.assert_any_call(grib, "scaledValueOfFirstFixedSurface", 12345)
mock_set.assert_any_call(grib, "typeOfSecondFixedSurface", -1)
mock_set.assert_any_call(grib, "scaleFactorOfSecondFixedSurface", 255)
mock_set.assert_any_call(grib, "scaledValueOfSecondFixedSurface", -1)
def test_weighted_mean_little(self):
data = np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9]], dtype=np.float32)
weights = np.array([[9, 8, 7], [6, 5, 4], [3, 2, 1]], dtype=np.float32)
cube = iris.cube.Cube(data, long_name="test_data", units="1")
hcs = iris.coord_systems.GeogCS(6371229)
lat_coord = iris.coords.DimCoord(np.array([1, 2, 3], dtype=np.float32), long_name="lat", units="1", coord_system=hcs)
lon_coord = iris.coords.DimCoord(np.array([1, 2, 3], dtype=np.float32), long_name="lon", units="1", coord_system=hcs)
cube.add_dim_coord(lat_coord, 0)
cube.add_dim_coord(lon_coord, 1)
cube.add_aux_coord(iris.coords.AuxCoord(np.arange(3, dtype=np.float32), long_name="dummy", units=1), 1)
self.assertCML(cube, ('analysis', 'weighted_mean_source.cml'))
a = cube.collapsed('lat', iris.analysis.MEAN, weights=weights)
# np.ma.average doesn't apply type promotion rules in some versions,
# and instead makes the result type float64. To ignore that case we
# fix up the dtype here if it is promotable from float32. We still want
# to catch cases where there is a loss of precision however.
if a.dtype > np.float32:
cast_data = a.data.astype(np.float32)
a.replace(cast_data, fill_value=a.fill_value)
self.assertCMLApproxData(a, ('analysis', 'weighted_mean_lat.cml'))
b = cube.collapsed(lon_coord, iris.analysis.MEAN, weights=weights)
if b.dtype > np.float32:
cast_data = b.data.astype(np.float32)
b.replace(cast_data, fill_value=b.fill_value)
b.data = np.asarray(b.data)
self.assertCMLApproxData(b, ('analysis', 'weighted_mean_lon.cml'))
self.assertEqual(b.coord('dummy').shape, (1, ))
# test collapsing multiple coordinates (and the fact that one of the coordinates isn't the same coordinate instance as on the cube)
c = cube.collapsed([lat_coord[:], lon_coord], iris.analysis.MEAN, weights=weights)
if c.dtype > np.float32:
cast_data = c.data.astype(np.float32)
c.replace(cast_data, fill_value=c.fill_value)
self.assertCMLApproxData(c, ('analysis', 'weighted_mean_latlon.cml'))
self.assertEqual(c.coord('dummy').shape, (1, ))
# Check new coord bounds - made from points
self.assertArrayEqual(c.coord('lat').bounds, [[1, 3]])
# Check new coord bounds - made from bounds
cube.coord('lat').bounds = [[0.5, 1.5], [1.5, 2.5], [2.5, 3.5]]
c = cube.collapsed(['lat', 'lon'], iris.analysis.MEAN, weights=weights)
self.assertArrayEqual(c.coord('lat').bounds, [[0.5, 3.5]])
cube.coord('lat').bounds = None
# Check there was no residual change
self.assertCML(cube, ('analysis', 'weighted_mean_source.cml'))
def setUp(self):
data = np.array(
[
[1, 2, 3, 4, 5],
[2, 3, 4, 5, 6],
[3, 4, 5, 6, 7],
[4, 5, 6, 7, 9],
],
dtype=np.float32,
)
cube = iris.cube.Cube(data, standard_name="x_wind", units="km/h")
self.lonlat_cs = iris.coord_systems.GeogCS(6371229)
cube.add_dim_coord(
DimCoord(
np.arange(4, dtype=np.float32) * 90 - 180,
"longitude",
units="degrees",
circular=True,
coord_system=self.lonlat_cs,
),
0,
)
cube.add_dim_coord(
DimCoord(
np.arange(5, dtype=np.float32) * 45 - 90,
"latitude",
units="degrees",
coord_system=self.lonlat_cs,
),
1,
)
cube.add_aux_coord(
DimCoord(
np.arange(4, dtype=np.float32),
long_name="x",
units="count",
circular=True,
),
0,
)
cube.add_aux_coord(
DimCoord(np.arange(5, dtype=np.float32),
long_name="y",
units="count"),
1,
)
self.cube = cube
def test_bounded_level(self):
cube = iris.load_cube(tests.get_data_path(("GRIB", "uk_t", "uk_t.grib2")))
# Changing pressure to altitude due to grib api bug:
# https://github.com/SciTools/iris/pull/715#discussion_r5901538
cube.remove_coord("pressure")
cube.add_aux_coord(
iris.coords.AuxCoord(1030.0, long_name="altitude", units="m", bounds=np.array([111.0, 1949.0]))
)
with self.temp_filename(".grib2") as testfile:
iris.save(cube, testfile)
with open(testfile, "rb") as saved_file:
g = gribapi.grib_new_from_file(saved_file)
self.assertEqual(gribapi.grib_get_double(g, "scaledValueOfFirstFixedSurface"), 111.0)
self.assertEqual(gribapi.grib_get_double(g, "scaledValueOfSecondFixedSurface"), 1949.0)
def _expected_cube(self, data):
cube = iris.cube.Cube(data)
cube.metadata = copy.deepcopy(self.src)
grid_x = self.grid.coord('longitude')
grid_y = self.grid.coord('latitude')
cube.add_dim_coord(grid_x.copy(), self.grid.coord_dims(grid_x))
cube.add_dim_coord(grid_y.copy(), self.grid.coord_dims(grid_y))
src_x = self.src.coord('longitude')
src_y = self.src.coord('latitude')
for coord in self.src.aux_coords:
if coord is not src_x and coord is not src_y:
if not self.src.coord_dims(coord):
cube.add_aux_coord(coord)
return cube
def _make_cube(self, a, b, data=0, a_dim=False, b_dim=False):
cube_data = np.empty((4, 5), dtype=np.float32)
cube_data[:] = data
cube = iris.cube.Cube(cube_data)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3, 4], dtype=np.int32), long_name="x", units="1"), 1)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3], dtype=np.int32), long_name="y", units="1"), 0)
for name, value, dim in zip(["a", "b"], [a, b], [a_dim, b_dim]):
dtype = np.str if isinstance(value, six.string_types) else np.float32
ctype = DimCoord if dim else AuxCoord
coord = ctype(np.array([value], dtype=dtype), long_name=name, units="1")
cube.add_aux_coord(coord)
return cube
def _make_cube(self, data, dtype=np.dtype('int32'), fill_value=None,
mask=None, lazy=False, N=3):
x = np.arange(N)
y = np.arange(N)
payload = self._make_data(data, dtype=dtype, fill_value=fill_value,
mask=mask, lazy=lazy, N=N)
cube = iris.cube.Cube(payload)
lat = DimCoord(y, standard_name='latitude', units='degrees')
cube.add_dim_coord(lat, 0)
lon = DimCoord(x, standard_name='longitude', units='degrees')
cube.add_dim_coord(lon, 1)
height = DimCoord(data, standard_name='height', units='m')
cube.add_aux_coord(height)
return cube
def _make_cube(self, a, b, c, d, data=0):
cube_data = np.empty((4, 5), dtype=np.float32)
cube_data[:] = data
cube = iris.cube.Cube(cube_data)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3, 4], dtype=np.int32),
long_name='x', units='1'), 1)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3], dtype=np.int32),
long_name='y', units='1'), 0)
for name, value in zip(['a', 'b', 'c', 'd'], [a, b, c, d]):
dtype = np.str if isinstance(value, six.string_types) else np.float32
cube.add_aux_coord(AuxCoord(np.array([value], dtype=dtype),
long_name=name, units='1'))
return cube
def _make_cube(self, a, b, c, d, data=0):
cube_data = np.empty((4, 5), dtype=np.float32)
cube_data[:] = data
cube = iris.cube.Cube(cube_data)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3, 4], dtype=np.int32),
long_name='x', units='1'), 1)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3], dtype=np.int32),
long_name='y', units='1'), 0)
for name, value in zip(['a', 'b', 'c', 'd'], [a, b, c, d]):
dtype = np.str if isinstance(value, basestring) else np.float32
cube.add_aux_coord(AuxCoord(np.array([value], dtype=dtype),
long_name=name, units='1'))
return cube
def create_cube(self):
data = np.arange(4).reshape(2, 2)
lat = iris.coords.DimCoord([0, 30], standard_name="latitude", units="degrees")
lon = iris.coords.DimCoord([0, 15], standard_name="longitude", units="degrees")
height = iris.coords.AuxCoord([1.5], standard_name="height", units="m")
t_unit = cf_units.Unit("hours since 1970-01-01 00:00:00", calendar="gregorian")
time = iris.coords.DimCoord([0, 6], standard_name="time", units=t_unit)
cube = iris.cube.Cube(data, standard_name="air_temperature", units="K")
cube.add_dim_coord(time, 0)
cube.add_dim_coord(lat, 1)
cube.add_aux_coord(lon, 1)
cube.add_aux_coord(height)
return cube
def setUp(self):
data = numpy.array( [[1, 2, 3, 4, 5],
[2, 3, 4, 5, 6],
[3, 4, 5, 6, 7],
[4, 5, 6, 7, 9]], dtype=numpy.float32)
cube = iris.cube.Cube(data, standard_name="x_wind", units="km/h")
self.lonlat_cs = iris.coord_systems.LatLonCS(iris.coord_systems.SpheroidDatum(), iris.coord_systems.PrimeMeridian(), iris.coord_systems.GeoPosition(90, 0), "reference_longitude?")
cube.add_dim_coord(DimCoord(numpy.arange(4, dtype=numpy.float32) * 90 -180, 'longitude', units='degrees', circular=True, coord_system=self.lonlat_cs), 0)
cube.add_dim_coord(DimCoord(numpy.arange(5, dtype=numpy.float32) * 45 -90, 'latitude', units='degrees', coord_system=self.lonlat_cs), 1)
cube.add_aux_coord(DimCoord(numpy.arange(4, dtype=numpy.float32), long_name='x', units='count', circular=True), 0)
cube.add_aux_coord(DimCoord(numpy.arange(5, dtype=numpy.float32), long_name='y', units='count'), 1)
self.cube = cube
def test_bounded_altitude_feet(self):
cube = iris.cube.Cube([0])
cube.add_aux_coord(
iris.coords.AuxCoord(1500.0,
long_name='altitude',
units='ft',
bounds=np.array([1000.0, 2000.0])))
grib = gribapi.grib_new_from_samples("GRIB2")
grib_save_rules.non_hybrid_surfaces(cube, grib)
self.assertEqual(
gribapi.grib_get_double(grib, "scaledValueOfFirstFixedSurface"),
304.0)
self.assertEqual(
gribapi.grib_get_double(grib, "scaledValueOfSecondFixedSurface"),
609.0)
def test_weighted_mean_little(self):
data = np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9]], dtype=np.float32)
weights = np.array([[9, 8, 7], [6, 5, 4], [3, 2, 1]], dtype=np.float32)
cube = iris.cube.Cube(data, long_name="test_data", units="1")
hcs = iris.coord_systems.GeogCS(6371229)
lat_coord = iris.coords.DimCoord(np.array([1, 2, 3], dtype=np.float32),
long_name="lat",
units="1",
coord_system=hcs)
lon_coord = iris.coords.DimCoord(np.array([1, 2, 3], dtype=np.float32),
long_name="lon",
units="1",
coord_system=hcs)
cube.add_dim_coord(lat_coord, 0)
cube.add_dim_coord(lon_coord, 1)
cube.add_aux_coord(
iris.coords.AuxCoord(np.arange(3, dtype=np.float32),
long_name="dummy",
units=1), 1)
self.assertCML(cube, ('analysis', 'weighted_mean_source.cml'))
a = cube.collapsed('lat', iris.analysis.MEAN, weights=weights)
self.assertCMLApproxData(a, ('analysis', 'weighted_mean_lat.cml'))
b = cube.collapsed(lon_coord, iris.analysis.MEAN, weights=weights)
b.data = np.asarray(b.data)
self.assertCMLApproxData(b, ('analysis', 'weighted_mean_lon.cml'))
self.assertEqual(b.coord('dummy').shape, (1, ))
# test collapsing multiple coordinates (and the fact that one of the coordinates isn't the same coordinate instance as on the cube)
c = cube.collapsed([lat_coord[:], lon_coord],
iris.analysis.MEAN,
weights=weights)
self.assertCMLApproxData(c, ('analysis', 'weighted_mean_latlon.cml'))
self.assertEqual(c.coord('dummy').shape, (1, ))
# Check new coord bounds - made from points
self.assertArrayEqual(c.coord('lat').bounds, [[1, 3]])
# Check new coord bounds - made from bounds
cube.coord('lat').bounds = [[0.5, 1.5], [1.5, 2.5], [2.5, 3.5]]
c = cube.collapsed(['lat', 'lon'], iris.analysis.MEAN, weights=weights)
self.assertArrayEqual(c.coord('lat').bounds, [[0.5, 3.5]])
cube.coord('lat').bounds = None
# Check there was no residual change
self.assertCML(cube, ('analysis', 'weighted_mean_source.cml'))
def _make_cube(self, a, b, data=0, a_dim=False, b_dim=False):
cube_data = np.empty((4, 5), dtype=np.float32)
cube_data[:] = data
cube = iris.cube.Cube(cube_data)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3, 4], dtype=np.int32),
long_name='x', units='1'), 1)
cube.add_dim_coord(DimCoord(np.array([0, 1, 2, 3], dtype=np.int32),
long_name='y', units='1'), 0)
for name, value, dim in zip(['a', 'b'], [a, b], [a_dim, b_dim]):
dtype = np.str if isinstance(value, six.string_types) else np.float32
ctype = DimCoord if dim else AuxCoord
coord = ctype(np.array([value], dtype=dtype),
long_name=name, units='1')
cube.add_aux_coord(coord)
return cube
def create_cube(self):
data = np.arange(4).reshape(2, 2)
lat = iris.coords.DimCoord([0, 30], standard_name='latitude',
units='degrees')
lon = iris.coords.DimCoord([0, 15], standard_name='longitude',
units='degrees')
height = iris.coords.AuxCoord([1.5], standard_name='height', units='m')
t_unit = cf_units.Unit('hours since 1970-01-01 00:00:00',
calendar='gregorian')
time = iris.coords.DimCoord([0, 6], standard_name='time', units=t_unit)
cube = iris.cube.Cube(data, standard_name='air_temperature', units='K')
cube.add_dim_coord(time, 0)
cube.add_dim_coord(lat, 1)
cube.add_aux_coord(lon, 1)
cube.add_aux_coord(height)
return cube
def test_similar_coord(self):
cube = self.cube_2d.copy()
lon = cube.coord("longitude")
lon.attributes["flight"] = "218BX"
lon.attributes["sensor_id"] = 808
lon.attributes["status"] = 2
lon2 = lon.copy()
lon2.attributes["sensor_id"] = 810
lon2.attributes["ref"] = "A8T-22"
del lon2.attributes["status"]
cube.add_aux_coord(lon2, [1])
lat = cube.coord("latitude")
lat2 = lat.copy()
lat2.attributes["test"] = "True"
cube.add_aux_coord(lat2, [0])
self.assertString(str(cube), ("cdm", "str_repr", "similar.__str__.txt"))
def test_add_aux_coord(self):
y_another = iris.coords.DimCoord(np.array([ 2.5, 7.5, 12.5]), long_name='y_another')
# DimCoords can live in cube.aux_coords
self.cube.add_aux_coord(y_another, 0)
self.assertEqual(self.cube.dim_coords, ())
self.assertEqual(self.cube.coords(), [y_another])
self.assertEqual(self.cube.aux_coords, (y_another,))
# AuxCoords in cube.aux_coords
self.cube.add_aux_coord(self.xy, [0, 1])
self.assertEqual(self.cube.dim_coords, ())
self.assertEqual(self.cube.coords(), [y_another, self.xy])
self.assertEqual(set(self.cube.aux_coords), {y_another, self.xy})
# Lengths must match up
cube = self.cube.copy()
with self.assertRaises(ValueError):
cube.add_aux_coord(self.xy, [1, 0])
def test_similar_coord(self):
cube = self.cube_2d.copy()
lon = cube.coord('longitude')
lon.attributes['flight'] = '218BX'
lon.attributes['sensor_id'] = 808
lon.attributes['status'] = 2
lon2 = lon.copy()
lon2.attributes['sensor_id'] = 810
lon2.attributes['ref'] = 'A8T-22'
del lon2.attributes['status']
cube.add_aux_coord(lon2, [1])
lat = cube.coord('latitude')
lat2 = lat.copy()
lat2.attributes['test'] = 'True'
cube.add_aux_coord(lat2, [0])
self.assertString(str(cube), ('cdm', 'str_repr', 'similar.__str__.txt'))
def test_theta_level(self):
cube = iris.cube.Cube([0])
cube.add_aux_coord(iris.coords.AuxCoord(
230.0, standard_name='air_potential_temperature',
units='K', attributes={'positive': 'up'},
bounds=np.array([220.0, 240.0])))
grib = gribapi.grib_new_from_samples("GRIB2")
set_fixed_surfaces(cube, grib)
self.assertEqual(
gribapi.grib_get_double(grib, "scaledValueOfFirstFixedSurface"),
220.0)
self.assertEqual(
gribapi.grib_get_double(grib, "scaledValueOfSecondFixedSurface"),
240.0)
self.assertEqual(
gribapi.grib_get_long(grib, "typeOfFirstFixedSurface"),
107)
self.assertEqual(
gribapi.grib_get_long(grib, "typeOfSecondFixedSurface"),
107)
def test_weighted_mean_little(self):
data = np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9]], dtype=np.float32)
weights = np.array([[9, 8, 7], [6, 5, 4], [3, 2, 1]], dtype=np.float32)
cube = iris.cube.Cube(data, long_name="test_data", units="1")
hcs = iris.coord_systems.GeogCS(6371229)
lat_coord = iris.coords.DimCoord(
np.array([1, 2, 3], dtype=np.float32), long_name="lat", units="1", coord_system=hcs
)
lon_coord = iris.coords.DimCoord(
np.array([1, 2, 3], dtype=np.float32), long_name="lon", units="1", coord_system=hcs
)
cube.add_dim_coord(lat_coord, 0)
cube.add_dim_coord(lon_coord, 1)
cube.add_aux_coord(iris.coords.AuxCoord(np.arange(3, dtype=np.float32), long_name="dummy", units=1), 1)
self.assertCML(cube, ("analysis", "weighted_mean_source.cml"))
a = cube.collapsed("lat", iris.analysis.MEAN, weights=weights)
self.assertCMLApproxData(a, ("analysis", "weighted_mean_lat.cml"))
b = cube.collapsed(lon_coord, iris.analysis.MEAN, weights=weights)
b.data = np.asarray(b.data)
self.assertCMLApproxData(b, ("analysis", "weighted_mean_lon.cml"))
self.assertEquals(b.coord("dummy").shape, (1,))
# test collapsing multiple coordinates (and the fact that one of the coordinates isn't the same coordinate instance as on the cube)
c = cube.collapsed([lat_coord[:], lon_coord], iris.analysis.MEAN, weights=weights)
self.assertCMLApproxData(c, ("analysis", "weighted_mean_latlon.cml"))
self.assertEquals(c.coord("dummy").shape, (1,))
# Check new coord bounds - made from points
self.assertArrayEqual(c.coord("lat").bounds, [[1, 3]])
# Check new coord bounds - made from bounds
cube.coord("lat").bounds = [[0.5, 1.5], [1.5, 2.5], [2.5, 3.5]]
c = cube.collapsed(["lat", "lon"], iris.analysis.MEAN, weights=weights)
self.assertArrayEqual(c.coord("lat").bounds, [[0.5, 3.5]])
cube.coord("lat").bounds = None
# Check there was no residual change
self.assertCML(cube, ("analysis", "weighted_mean_source.cml"))
