def test_kmc_in_path(self): '''Test kmc in path''' self.assertTrue( external_progs.is_in_path('kmc'), 'Error! Did not find kmc in your path! Please install kmc')
def test_samtools_in_path(self): '''Test samtools in path''' self.assertTrue( external_progs.is_in_path('samtools'), 'Error! Did not find samtools in your path! Please install samtools' )
def test_smalt_in_path(self): '''Test smalt in path''' self.assertTrue( external_progs.is_in_path('smalt'), 'Error! Did not find smalt in your path! Please install smalt')
def test_delta_filter_in_path(self): '''Test delta-filter in path''' self.assertTrue( external_progs.is_in_path('delta-filter'), 'Error! Did not find delta-filter in your path! Please install MUMmer' )
def test_show_coords_in_path(self): '''Test show-coords in path''' self.assertTrue( external_progs.is_in_path('show-coords'), 'Error! Did not find show-coords in your path! Please install MUMmer' )
def test_kmc_dump_in_path(self): '''Test kmc_dump in path''' self.assertTrue(external_progs.is_in_path('kmc_dump'), 'Error! Did not find kmc_dump in your path! Please install kmc')
def test_nucmer_in_path(self): '''Test nucmer in path''' self.assertTrue( external_progs.is_in_path('nucmer'), 'Error! Did not find nucmer in your path! Please install MUMmer')
def test_smalt_in_path(self): '''Test smalt in path''' self.assertTrue(external_progs.is_in_path('smalt'), 'Error! Did not find smalt in your path! Please install smalt')
def test_samtools_in_path(self): '''Test samtools in path''' self.assertTrue(external_progs.is_in_path('samtools'), 'Error! Did not find samtools in your path! Please install samtools')
def test_show_coords_in_path(self): '''Test show-coords in path''' self.assertTrue(external_progs.is_in_path('show-coords'), 'Error! Did not find show-coords in your path! Please install MUMmer')
def test_delta_filter_in_path(self): '''Test delta-filter in path''' self.assertTrue(external_progs.is_in_path('delta-filter'), 'Error! Did not find delta-filter in your path! Please install MUMmer')
def test_nucmer_in_path(self): '''Test nucmer in path''' self.assertTrue(external_progs.is_in_path('nucmer'), 'Error! Did not find nucmer in your path! Please install MUMmer')