def test_run_generic_commands(generic_command_fixture):
commands = [
"ls .",
"ls invalid-file-path",
]
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration()
for job_param in inputs.iter_jobs():
config.add_job(job_param)
assert config.get_num_jobs() == 2
config.dump(CONFIG_FILE)
cmds = (
f"{SUBMIT_JOBS} {CONFIG_FILE} --output={OUTPUT} -p 0.1 -h {FAKE_HPC_CONFIG}",
# Test with higher queue depth. This exercises the code paths but
# doesn't actually verify the functionality.
# The infrastructure to do that is currently lacking. TODO
f"{SUBMIT_JOBS} {CONFIG_FILE} --output={OUTPUT} -p 0.1 -q 32 -h {FAKE_HPC_CONFIG}",
)
for cmd in cmds:
check_run_command(cmd)
check_run_command(f"{WAIT} --output={OUTPUT} --poll-interval=0.01")
assert list(Path(OUTPUT).glob("*.sh"))
check_run_command(f"jade prune-files {OUTPUT}")
assert not list(Path(OUTPUT).glob("*.sh"))
def create_config():
num_commands = 5
commands = ['echo "hello world"'] * num_commands
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration(job_inputs=inputs)
jobs = list(inputs.iter_jobs())
for i, job_param in enumerate(jobs):
if i < 3:
job_param.submission_group = "group1"
else:
job_param.submission_group = "group2"
config.add_job(job_param)
hpc_config1 = load_data(FAKE_HPC_CONFIG)
hpc_config2 = copy.deepcopy(hpc_config1)
hpc_config1["hpc"]["walltime"] = "1:00:00"
hpc_config2["hpc"]["walltime"] = "5:00:00"
params1 = SubmitterParams(hpc_config=hpc_config1, per_node_batch_size=3)
params2 = SubmitterParams(hpc_config=hpc_config2, per_node_batch_size=1)
group1 = SubmissionGroup(name="group1", submitter_params=params1)
group2 = SubmissionGroup(name="group2", submitter_params=params2)
config.append_submission_group(group1)
config.append_submission_group(group2)
return config
def test_job_order(generic_command_fixture):
num_jobs = 50
commands = ["echo hello world"] * num_jobs
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration()
for job_param in inputs.iter_jobs():
config.add_job(job_param)
assert config.get_num_jobs() == num_jobs
job = config.get_job("1")
for i in range(10, 15):
job.blocked_by.add(i)
config.get_job("2").blocked_by.add("1")
config.get_job("21").blocked_by.add("30")
config.get_job("41").blocked_by.add("50")
config.dump(CONFIG_FILE)
cmd = (f"{SUBMIT_JOBS} {CONFIG_FILE} --output={OUTPUT} "
"--per-node-batch-size=10 "
"--max-nodes=4 "
"--poll-interval=0.1 "
f"--hpc-config {FAKE_HPC_CONFIG} "
"--num-processes=10")
check_run_command(cmd)
check_run_command(f"{WAIT} --output={OUTPUT} --poll-interval=0.01")
result_summary = ResultsSummary(OUTPUT)
results = result_summary.list_results()
assert len(results) == num_jobs
tracker = {x.name: x for x in results}
for i in range(10, 15):
assert tracker["1"].completion_time > tracker[str(i)].completion_time
assert tracker["2"].completion_time > tracker["1"].completion_time
assert tracker["21"].completion_time > tracker["30"].completion_time
assert tracker["41"].completion_time > tracker["50"].completion_time
# Verify that stats are summarized correctly with aggregation mode.
stats_text = Path(OUTPUT) / "stats.txt"
assert stats_text.exists()
assert "Average" in stats_text.read_text()
stats_json = Path(OUTPUT) / "stats_summary.json"
assert stats_json.exists()
stats = load_data(stats_json)
assert stats
assert "batch" in stats[0]
def test_job_configuration__shuffle_jobs(job_fixture):
num_jobs = 10
with open(TEST_FILENAME, "w") as f_out:
for i in range(num_jobs):
f_out.write("echo hello world\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration(job_inputs=inputs)
for job_param in inputs.iter_jobs():
config.add_job(job_param)
assert config.get_num_jobs() == num_jobs
assert [x.name for x in config.iter_jobs()] == [str(x) for x in range(1, num_jobs + 1)]
config.shuffle_jobs()
assert [x.name for x in config.iter_jobs()] != [str(x) for x in range(1, num_jobs + 1)]
def test_job_configuration__check_job_dependencies_estimate(job_fixture):
with open(TEST_FILENAME, "w") as f_out:
f_out.write("echo hello world\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration(job_inputs=inputs)
for job_param in inputs.iter_jobs():
config.add_job(job_param)
assert config.get_num_jobs() == 1
hpc_config = HpcConfig(**load_data(FAKE_HPC_CONFIG))
params = SubmitterParams(hpc_config=hpc_config, per_node_batch_size=0)
with pytest.raises(InvalidConfiguration):
config.check_job_dependencies(params)
def test_job_configuration__custom_names(job_fixture):
num_jobs = 3
with open(TEST_FILENAME, "w") as f_out:
for i in range(num_jobs):
f_out.write("echo hello world\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration(job_inputs=inputs)
for i, job_param in enumerate(inputs.iter_jobs()):
job_param.name = f"job_{i}"
config.add_job(job_param)
assert config.get_num_jobs() == num_jobs
job = GenericCommandParameters(command="echo hello world", name="job_2")
with pytest.raises(InvalidConfiguration):
config.add_job(job)
def cleanup():
_do_cleanup()
commands = [
'echo "hello"',
"ls invalid-path",
'echo "hello"',
'echo "hello"',
'echo "hello"',
'echo "hello"',
'echo "hello"',
'echo "hello"',
]
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration.auto_config(
inputs, cancel_on_blocking_job_failure=True)
config.get_job("3").set_blocking_jobs(set([2]))
config.get_job("4").set_blocking_jobs(set([3]))
config.get_job("5").set_blocking_jobs(set([4]))
config.get_job("6").set_blocking_jobs(set([5]))
config.get_job("7").set_blocking_jobs(set([6]))
config.get_job("8").set_blocking_jobs(set([7]))
config.dump(CONFIG_FILE)
yield
_do_cleanup()
def cleanup():
_do_cleanup()
commands = ['echo "hello world"'] * NUM_COMMANDS
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration.auto_config(inputs)
config.dump(CONFIG_FILE)
yield
_do_cleanup()
def test_job_configuration__check_job_dependencies_blocking(job_fixture):
with open(TEST_FILENAME, "w") as f_out:
f_out.write("echo hello world\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration(job_inputs=inputs)
for job_param in inputs.iter_jobs():
config.add_job(job_param)
assert config.get_num_jobs() == 1
hpc_config = HpcConfig(**load_data(FAKE_HPC_CONFIG))
params = SubmitterParams(hpc_config=hpc_config)
job = config.get_job("1")
job.blocked_by.add("10")
with pytest.raises(InvalidConfiguration):
config.check_job_dependencies(params)
# While we have this setup, verify that submit-jobs calls this function.
config.dump(CONFIG_FILE)
cmd = f"{SUBMIT_JOBS} {CONFIG_FILE} --output={OUTPUT} " "--poll-interval=.1 "
ret = run_command(cmd)
assert ret != 0
def test_try_add_blocked_jobs(cleanup):
num_commands = 5
commands = ['echo "hello world"'] * num_commands
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration(job_inputs=inputs)
jobs = list(inputs.iter_jobs())
for i, job_param in enumerate(jobs):
if i == num_commands - 1:
job_param.blocked_by = set([1, 2, 3, 4])
config.add_job(job_param)
config.dump(CONFIG_FILE)
for option in ("--try-add-blocked-jobs", "--no-try-add-blocked-jobs"):
cmd = f"{SUBMIT_JOBS} {CONFIG_FILE} --output={OUTPUT} -h {FAKE_HPC_CONFIG} -p 0.1 {option}"
ret = run_command(cmd)
assert ret == 0
ret = run_command(f"{WAIT} --output={OUTPUT} -p 0.01")
assert ret == 0
events_file = os.path.join(OUTPUT, "submit_jobs_events.log")
events_summary = EventsSummary(OUTPUT, preload=True)
submit_events = events_summary.list_events(EVENT_NAME_HPC_SUBMIT)
if option == "--try-add-blocked-jobs":
assert len(submit_events) == 1
event = submit_events[0]
assert event.data["batch_size"] == num_commands
shutil.rmtree(OUTPUT)
else:
assert len(submit_events) == 2
event1 = submit_events[0]
event2 = submit_events[1]
assert event1.data["batch_size"] == num_commands - 1
assert event2.data["batch_size"] == 1
def job_too_long():
_do_cleanup()
commands = ['echo "hello world"'] * NUM_COMMANDS
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration.auto_config(inputs,
minutes_per_job=10)
for i, job in enumerate(config.iter_jobs()):
if i == 1:
job.estimated_run_minutes = 1000
break
config.dump(CONFIG_FILE)
yield
_do_cleanup()
def test_resubmit_with_blocking_jobs(basic_setup):
num_commands = 7
commands = ['echo "hello world"'] * num_commands
with open(TEST_FILENAME, "w") as f_out:
for command in commands:
f_out.write(command + "\n")
inputs = GenericCommandInputs(TEST_FILENAME)
config = GenericCommandConfiguration(job_inputs=inputs)
jobs = list(inputs.iter_jobs())
# Set an inefficient ordering to make sure the resubmit algorithm is recursive.
for i, job_param in enumerate(jobs):
if i == 3:
job_param.blocked_by = set([5])
elif i == 4:
job_param.blocked_by = set([7])
elif i == 6:
job_param.blocked_by = set([6])
config.add_job(job_param)
config.dump(CONFIG_FILE)
cmd = f"{SUBMIT_JOBS} {CONFIG_FILE} --output={OUTPUT}"
ret = run_command(cmd)
assert ret == 0
ret = run_command(f"{WAIT} --output={OUTPUT} -p 0.01")
assert ret == 0
agg = ResultsAggregator.load(OUTPUT)
results = agg.get_results_unsafe()
assert results
for result in results:
assert result.return_code == 0
found = False
for i, result in enumerate(results):
if result.name == "7":
results.pop(i)
found = True
break
assert found
agg._write_results(results)
results_filename = os.path.join(OUTPUT, RESULTS_FILE)
final_results = load_data(results_filename)
missing = None
for i, result in enumerate(final_results["results"]):
if result["name"] == "7":
missing = result
final_results["results"].pop(i)
break
assert missing is not None
final_results["results_summary"]["num_missing"] = 1
final_results["results_summary"]["num_successful"] -= 1
final_results["missing_jobs"] = [missing["name"]]
dump_data(final_results, results_filename)
summary = ResultsSummary(OUTPUT)
assert len(summary.get_failed_results()) == 0
assert len(summary.get_successful_results()) == num_commands - 1
first_batch = load_data(Path(OUTPUT) / "config_batch_1.json")
assert len(first_batch["jobs"]) == num_commands
ret = run_command(f"{RESUBMIT_JOBS} {OUTPUT}")
assert ret == 0
ret = run_command(f"{WAIT} --output={OUTPUT} -p 0.01")
assert ret == 0
summary = ResultsSummary(OUTPUT)
assert len(summary.get_successful_results()) == num_commands
second_batch_file = Path(OUTPUT) / "config_batch_2.json"
assert second_batch_file.exists()
second_batch = load_data(second_batch_file)["jobs"]
assert len(second_batch) == 3
