Ejemplo n.º 1
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    def testPush(self):
        """This tests the push ingest by creating a test dir, populating it, then forcing the ingester to run
        """
        staging = tempfile.mkdtemp()
        self.todelete.append(staging)

        # Create a temp file to ingest
        f_name = str(int(time.time()))
        f = open(os.path.join(staging, f_name), "a")
        f.close()

        # Check there is only 1 file here
        self.assertEquals(1, len(os.listdir(staging)))

        dataset = Dataset()
        dataset.id = 1
        dataset.data_source = PushDataSource(path=staging,
                                             pattern='^(?P<timestamp>[0-9]+)$')

        self.ingester.enqueue_ingress(dataset)
        self.ingester.process_ingress_queue(True)

        self.assertEquals(1, self.ingester._archive_queue.qsize())

        # Check there are now no files
        self.assertEquals(0, len(os.listdir(staging)))
Ejemplo n.º 2
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    def testMultiDatasetExtraction(self):
        """This test demonstrates use case #402.
        There are 2 datasets created, the first holds a datafile, and has a pull ingest occurring, along with 
        a configured custom script. The second dataset holds observation data, that will be extracted from the
        datafile in the first dataset.
        """
        temperature_schema = DataEntrySchema()
        temperature_schema.addAttr(Double("Temperature"))
        temperature_schema = self.ingester_platform.post(temperature_schema)

        file_schema = DataEntrySchema()
        file_schema.addAttr(FileDataType("file"))
        file_schema = self.ingester_platform.post(file_schema)

        location = self.ingester_platform.post(
            Location(10.0, 11.0, "Test Site", 100))
        temp_dataset = Dataset(location=None, schema=temperature_schema.id)

        file_dataset = Dataset(
            location=None,
            schema=file_schema.id,
            data_source=PullDataSource(
                "http://test.com",
                "file_handle",
                processing_script=
                "file://d:/processing_scripts/awsome_processing.py"))
Ejemplo n.º 3
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 def setup_datasets(self):
     ds = Dataset()
     ds.data_source = _DataSource()
     ds.id = 1
     ds.data_source.__xmlrpc_class__ = "mock_data_source"
     ds.data_source.sampling = PeriodicSampling(10000)
     self.datasets.append(ds)
Ejemplo n.º 4
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    def testPostProcessScript(self):
        """This test performs a complex data ingest, where the main data goes into dataset 1 and 
        the extracted data goes into dataset 2"""
        script = """import os
import datetime

from jcudc24ingesterapi.models.data_entry import DataEntry, FileObject

def process(cwd, data_entry):
    data_entry = data_entry[0]
    ret = []
    with open(os.path.join(cwd, data_entry["file1"].f_path)) as f:
        for l in f.readlines():
            l = l.strip().split(",")
            if len(l) != 2: continue
            new_data_entry = DataEntry(timestamp=datetime.datetime.now())
            new_data_entry["a"] = FileObject(f_path=l[1].strip())
            ret.append( new_data_entry )
    return ret
"""
        # Capture the ingests
        data_entries = DataEntryListener()
        self.ingester.service.register_observation_listener(data_entries)

        dataset = Dataset(dataset_id=1)
        dataset.data_source = _DataSource(processing_script=script)
        dataset.data_source.__xmlrpc_class__ = "csv1"

        self.ingester.enqueue_ingress(dataset)
        self.ingester.process_ingress_queue(True)
        self.assertEquals(0, self.ingester._ingress_queue.qsize())
        self.assertEquals(1, self.ingester._archive_queue.qsize())
        self.ingester.process_archive_queue(True)
        self.assertEquals(0, self.ingester._archive_queue.qsize())
        self.assertEquals(2, data_entries.count())
Ejemplo n.º 5
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    def test_dataset_roundtrip(self):
        """Attempt to round trip a dataset object"""
        script_contents = """Some Script
More"""

        dataset = Dataset(location=1,
                          schema=2,
                          data_source=PullDataSource(
                              "http://www.bom.gov.au/radar/IDR733.gif",
                              "file",
                              processing_script=script_contents),
                          location_offset=LocationOffset(0, 1, 2))

        dataset_dict = self.marshaller.obj_to_dict(dataset)
        dataset1 = self.marshaller.dict_to_obj(dataset_dict)

        self.assertIsNotNone(dataset1, "Dataset should not be none")
        self.assertEquals(dataset1.location, dataset.location,
                          "Location ID does not match")
        self.assertEquals(
            dataset1.schema, dataset.schema,
            "schema does not match %d!=%d" % (dataset1.schema, dataset.schema))
        self.assertEquals(dataset1.location_offset.x, 0)
        self.assertEquals(dataset1.location_offset.y, 1)
        self.assertEquals(dataset1.location_offset.z, 2)
Ejemplo n.º 6
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    def test_unit_of_work_persistence(self):
        unit = self.ingester_platform.createUnitOfWork()

        loc = Location(10.0, 11.0, "Test Site", 100, None)
        unit.insert(loc)
        self.assertIsNotNone(loc.id)

        file_schema = DataEntrySchema()
        file_schema.name = "File Schema"
        file_schema.addAttr(FileDataType("file"))
        file_schema_id = unit.insert(file_schema)

        self.assertIsNotNone(file_schema_id, "Schema ID should not be null")

        dataset = Dataset(location=loc.id,
                          schema=file_schema.id,
                          data_source=PullDataSource(
                              "http://www.bom.gov.au/radar/IDR733.gif",
                              "file"))
        unit.insert(dataset)

        # Persist all the objects
        unit.commit()

        self.assertIsNotNone(loc, "Location should not be none")
        self.assertIsNotNone(loc.id, "Location should not be none")
        self.assertGreater(loc.id, 0, "Location ID not real")
        self.assertEqual(loc.name, "Test Site", "Location name doesn't match")

        self.assertIsNotNone(dataset, "dataset should not be none")
        self.assertIsNotNone(dataset.id, "dataset should not be none")
        self.assertGreater(dataset.id, 0, "dataset ID not real")
Ejemplo n.º 7
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    def testBasicIngest(self):
        """This test performs a simple data ingest"""
        # Capture the ingests
        data_entries = DataEntryListener()
        self.ingester.service.register_observation_listener(data_entries)

        dataset = Dataset()
        dataset.id = 1
        datasource = _DataSource()
        datasource.__xmlrpc_class__ = "csv1"

        dataset.data_source = datasource

        self.ingester.enqueue_ingress(dataset)
        self.assertEquals(1, self.ingester._ingress_queue.qsize())

        self.ingester.process_ingress_queue(True)

        self.assertEquals(1, self.ingester._archive_queue.qsize())

        self.ingester.process_archive_queue(True)
        self.assertEquals(1, data_entries.count())
Ejemplo n.º 8
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    def test_dataset_persist(self):
        schema = DataEntrySchema("base1")
        schema.addAttr(FileDataType("file"))
        schema = self.service.persist(schema)

        loc = Location(10.0, 11.0)
        loc.name = "Location"
        loc = self.service.persist(loc)

        dataset = Dataset()
        dataset.schema = schema.id
        dataset.location = loc.id

        dataset1 = self.service.persist(dataset)
        self.assertEquals(1, dataset1.version)

        dataset1.version = 0

        self.assertRaises(StaleObjectError, self.service.persist, dataset1)

        dataset1.version = 1
        dataset2 = self.service.persist(dataset1)
        self.assertEquals(2, dataset2.version)
Ejemplo n.º 9
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    def test_dataset_persistence(self):
        loc = Location(10.0, 11.0, "Test Site", 100, None)
        loc = self.ingester_platform.post(loc)
        self.assertIsNotNone(loc, "Location should not be none")
        self.assertIsNotNone(loc.id, "Location should not be none")

        file_schema = DataEntrySchema()
        file_schema.addAttr(FileDataType("file"))
        file_schema = self.ingester_platform.post(file_schema)

        script_contents = """Some Script
More"""

        dataset = Dataset(location=loc.id,
                          schema=file_schema.id,
                          data_source=PullDataSource(
                              "http://www.bom.gov.au/radar/IDR733.gif",
                              "file",
                              processing_script=script_contents),
                          location_offset=LocationOffset(0, 1, 2))
        dataset1 = self.ingester_platform.post(dataset)
        self.assertIsNotNone(dataset1, "Dataset should not be none")
        self.assertEquals(dataset1.location, dataset.location,
                          "Location ID does not match")
        self.assertEquals(
            dataset1.schema, dataset.schema,
            "schema does not match %d!=%d" % (dataset1.schema, dataset.schema))
        self.assertEquals(dataset1.location_offset.x, 0)
        self.assertEquals(dataset1.location_offset.y, 1)
        self.assertEquals(dataset1.location_offset.z, 2)

        self.assertEquals(script_contents,
                          dataset1.data_source.processing_script)

        datasets = self.ingester_platform.findDatasets()
        self.assertEquals(1, len(datasets))

        datasets = self.ingester_platform.findDatasets(location=loc.id)
        self.assertEquals(1, len(datasets))

        data_entry_schemas = self.ingester_platform.search(
            DataEntrySchemaSearchCriteria(), 0, 10).results
        self.assertEquals(1, len(data_entry_schemas))

        datasets = self.ingester_platform.search(DatasetSearchCriteria(), 0,
                                                 10).results
        self.assertEquals(1, len(datasets))
Ejemplo n.º 10
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    def test_dataset_data_source_unit(self):
        """This test creates a simple schema hierarchy, and tests updates, etc"""
        unit = UnitOfWork(None)

        schema1 = DataEntrySchema("base1")
        schema1.addAttr(FileDataType("file"))
        schema_id = unit.post(schema1)

        loc = Location(10.0, 11.0)
        loc.name = "Location"
        loc_id = unit.post(loc)

        dataset1 = Dataset()
        dataset1.schema = schema_id
        dataset1.location = loc_id
        dataset1_id = unit.post(dataset1)

        dataset2 = Dataset()
        dataset2.schema = schema_id
        dataset2.location = loc_id
        dataset2.data_source = DatasetDataSource(dataset1_id, "")
        dataset2_id = unit.post(dataset2)

        ret = self.service.commit(unit, None)

        found = False
        for r in ret:
            if isinstance(r, Dataset) and dataset1_id == r.correlationid:
                dataset1_id = r.id
            elif isinstance(r, Dataset) and dataset2_id == r.correlationid:
                self.assertEquals(dataset1_id, r.data_source.dataset_id,
                                  "Data source dataset_id was not updated")
                found = True

        self.assertTrue(
            found, "Didn't find the dataset with the dataset data source")
Ejemplo n.º 11
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    def test_parent_schemas(self):
        """This test creates a nested schema with attributes provided at 2
        different levels. A data entry is saved, and then retrieved, and the
        values tested.
        """
        loc1 = self.ingester_platform.post(
            Location(11.0, 11.0, "Test Site", 100))

        temp_work = self.ingester_platform.createUnitOfWork()
        temperature_schema = DataEntrySchema("Test Temp Schema")
        temperature_schema.addAttr(Double("temperature"))
        temp_work.post(temperature_schema)
        temp_work.commit()

        air_temperature_schema = DataEntrySchema("Air Temp Schema")
        air_temperature_schema.extends = [temperature_schema.id]
        air_temperature_schema = self.ingester_platform.post(
            air_temperature_schema)

        instrument_schema = DataEntrySchema("Instrument Schema")
        instrument_schema.extends = [air_temperature_schema.id]
        instrument_schema.addAttr(Double("var2"))
        instrument_schema = self.ingester_platform.post(instrument_schema)

        dataset = Dataset(location=loc1.id, schema=instrument_schema.id)
        dataset = self.ingester_platform.post(dataset)

        work = self.ingester_platform.createUnitOfWork()
        data_entry = DataEntry(dataset.id, datetime.datetime.now())
        data_entry["temperature"] = 10
        data_entry["var2"] = 11
        work.post(data_entry)
        work.commit()

        data_entry_ret = self.ingester_platform.getDataEntry(
            dataset.id, data_entry.id)

        self.assertEquals(data_entry["temperature"],
                          data_entry_ret["temperature"])
        self.assertEquals(data_entry["var2"], data_entry_ret["var2"])
Ejemplo n.º 12
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    def test_pull_ingest_functionality(self):
        loc = Location(10.0, 11.0, "Test Site", 100, None)
        loc = self.ingester_platform.post(loc)

        file_schema = DataEntrySchema()
        file_schema.addAttr(FileDataType("file"))
        file_schema = self.ingester_platform.post(file_schema)

        dataset = Dataset(location=loc.id,
                          schema=file_schema.id,
                          data_source=PullDataSource(
                              "http://www.bom.gov.au/radar/IDR733.gif",
                              "file",
                              sampling=PeriodicSampling(10000)))
        dataset1 = self.ingester_platform.post(dataset)
        self.assertEquals(dataset1.location, dataset.location,
                          "Location ID does not match")
        self.assertEquals(dataset1.schema, dataset.schema,
                          "schema does not match")

        self.ingester_platform.disableDataset(dataset1.id)

        dataset1a = self.ingester_platform.getDataset(dataset1.id)
        self.assertEquals(dataset1a.enabled, False)
Ejemplo n.º 13
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    def test_data_types(self):
        schema1 = DatasetMetadataSchema("schema1")
        schema1.addAttr(FileDataType("file"))
        schema1a = self.service.persist(schema1)

        self.assertEquals(1, len(schema1a.attrs))

        schema2 = DataEntrySchema("schema2")
        schema2.addAttr(FileDataType("file"))
        schema2.addAttr(Double("x"))
        schema2a = self.service.persist(schema2)

        loc = Location(10.0, 11.0)
        loca = self.service.persist(loc)

        dataset = Dataset()
        dataset.schema = schema1a.id
        dataset.location = loca.id
        # We've trying to use a dataset_metadata schema, so this should fail
        self.assertRaises(ValueError, self.service.persist, dataset)

        dataset.schema = schema2a.id
        # Now we're using the correct type of schema
        dataset1a = self.service.persist(dataset)

        dataset1b = self.service.get_dataset(dataset1a.id)
        self.assertEquals(dataset1a.id, dataset1b.id)
        self.assertDictEqual(dataset1a.__dict__, dataset1b.__dict__)

        # Update and add a data source
        dataset1b.data_source = PullDataSource(
            "http://www.abc.net.au",
            None,
            recursive=False,
            field="file",
            processing_script="TEST",
            sampling=PeriodicSampling(10000))
        dataset1b.enabled = True
        dataset1c = self.service.persist(dataset1b)
        self.assertNotEqual(None, dataset1c.data_source)
        self.assertEqual("TEST", dataset1c.data_source.processing_script)
        self.assertNotEqual(None, dataset1c.data_source.sampling)

        datasets = self.service.get_active_datasets()
        self.assertEquals(1, len(datasets))
        self.assertNotEqual(None, datasets[0].data_source)
        self.assertEqual("TEST", datasets[0].data_source.processing_script)
        self.assertNotEqual(None, datasets[0].data_source.sampling)

        # Test with criteria
        datasets = self.service.get_active_datasets(kind="pull_data_source")
        self.assertEquals(1, len(datasets))

        datasets = self.service.get_active_datasets(kind="push_data_source")
        self.assertEquals(0, len(datasets))

        schema1b = self.service.get_schema(schema1a.id)
        self.assertEquals(schema1a.id, schema1b.id)

        datasets = self.service.search("dataset")
        self.assertEquals(1, len(datasets))

        schemas = self.service.search("data_entry_schema")
        self.assertEquals(1, len(schemas))

        schemas = self.service.search("dataset_metadata_schema")
        self.assertEquals(1, len(schemas))

        locs = self.service.search("location")
        self.assertEquals(1, len(locs))

        # Test ingest
        data_entry_1 = DataEntry(dataset1b.id, datetime.datetime.now())
        data_entry_1['x'] = 27.8
        data_entry_1 = self.service.persist(data_entry_1)
        self.assertIsNotNone(data_entry_1.id)
file_schema.addAttr(FileDataType("file"))
file_schema = ingester_platform.post(file_schema)

temp_schema = DataEntrySchema("temperature_reading")
temp_schema.addAttr(Double("temp"))
temp_schema = ingester_platform.post(temp_schema)

# Setup the location
loc = Location(-19.34427, 146.784197, "Mt Stuart", 100, None)
loc = ingester_platform.post(loc)

# Create the dataset to store the data in
file_dataset = Dataset(location=loc.id,
                       schema=file_schema.id,
                       data_source=PullDataSource(
                           url=tree_url,
                           field="file",
                           recursive=True,
                           sampling=PeriodicSampling(10000)))
file_dataset.enabled = False
file_dataset = ingester_platform.post(file_dataset)

# This processing script is
processing_script = """
import os
import datetime
from dc24_ingester_platform.utils import *

def process(cwd, data_entries):
    ret = []
    started = False
Ejemplo n.º 15
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    def test_api_usage(self):
#       User data that is created by filling out the provisioning interface workflow steps.
        #   General
        title = "Test project"
        data_manager = "A Person"
        project_lead = "Another Person"

        #   Metadata
        project_region = Region("Test Region", ((1, 1), (2, 2),(2,1), (1,1)))

        #   Methods & Datasets
        loc1 = Location(11.0, 11.0, "Test Site", 100)
        loc2 = Location(11.0, 11.0, "Test Site", 100)
        loc3 = Location(12.0, 11.0, "Test Site", 100)

        temp_work = self.ingester_platform.createUnitOfWork()
        temperature_schema = DataEntrySchema("Test Temp Schema")
        temperature_schema.addAttr(Double("temperature"))
        temp_work.post(temperature_schema)
        temp_work.commit()

        air_temperature_schema = DataEntrySchema("Air Temp Schema")
        air_temperature_schema.extends = [temperature_schema.id]
        air_temperature_schema = self.ingester_platform.post(air_temperature_schema)

        second_level_inheritence_schema = DataEntrySchema("Second Inheritence")
        second_level_inheritence_schema.extends = [air_temperature_schema.id]
        second_level_inheritence_schema = self.ingester_platform.post(second_level_inheritence_schema)

        # Check the name is set
        temperature_schema_1 = self.ingester_platform.getSchema(temperature_schema.id)
        self.assertIsNotNone(temperature_schema.name)
        self.assertEquals(temperature_schema.name, temperature_schema_1.name)
        
        file_schema = DataEntrySchema()
        file_schema.addAttr(FileDataType("file"))
        file_schema = self.ingester_platform.post(file_schema)

        dataset1 = Dataset(location=None, schema=temperature_schema.id)
        dataset2 = Dataset(location=None, schema=file_schema.id, data_source=PullDataSource("http://test.com", "file_handle", processing_script="file://d:/processing_scripts/awsome_processing.py"))

#        dataset3 = Dataset(None, file_schema, PullDataSource("http://test.com", "file_handle"), CustomSampling("file://d:/sampling_scripts/awsome_sampling.py"), "file://d:/processing_scripts/awsome_processing.py")

        self.cleanup_files.append(dataset2.data_source.processing_script)
#        self.cleanup_files.push(dataset3.sampling.script)
#        self.cleanup_files.push(dataset3.processing_script)

#       Provisioning admin accepts the submitted project
        work = self.ingester_platform.createUnitOfWork()

        work.post(project_region)    # Save the region

        loc1.region = project_region.id                  # Set the datasets location to use the projects region
        work.post(loc1)                        # Save the location
        dataset1.location = loc1.id                            # Set the datasets location
        work.post(dataset1)                # Save the dataset

        loc2.region = project_region.id
        work.post(loc2)
        dataset2.location = loc2.id
        work.post(dataset2)

        work.commit()

        # Region, location and dataset id's will be saved to the project within the provisioning system in some way


#       User searches for datasets

        # TODO: Nigel? - Define searching api
        found_dataset_id = dataset1.id                  # The dataset that has an extended file schema

#       User manually enters data
        timestamp = datetime.datetime.now()
        data_entry_1 = DataEntry(found_dataset_id, timestamp)
        data_entry_1['temperature'] = 27.8                # Add the extended schema items
        data_entry_1 = self.ingester_platform.post(data_entry_1)
        self.assertIsNotNone(data_entry_1.id)

        timestamp2 = timestamp + datetime.timedelta(seconds=1)
        data_entry_2 = DataEntry(found_dataset_id, timestamp2)
        data_entry_2['temperature'] = 27.8                # Add the extended schema items
        data_entry_2 = self.ingester_platform.post(data_entry_2)
        
        self.assertEquals(2, len(self.ingester_platform.search(DataEntrySearchCriteria(found_dataset_id), 0, 10).results))
        result = self.ingester_platform.search(DataEntrySearchCriteria(found_dataset_id), 0, 1)
        self.assertEquals(2, result.count)
        self.assertEquals(1, len(result.results))
        self.assertEquals(1, len(self.ingester_platform.search(DataEntrySearchCriteria(found_dataset_id), 1, 1).results))
        
        result = self.ingester_platform.search(DataEntrySearchCriteria(found_dataset_id), 2, 1)
        self.assertEquals(0, len(result.results))
                
        self.assertEquals(0, len(self.ingester_platform.search(DataEntrySearchCriteria(found_dataset_id, 
                                 end_time=timestamp-datetime.timedelta(seconds=60)), 0, 10).results))
        self.assertEquals(0, len(self.ingester_platform.search(DataEntrySearchCriteria(found_dataset_id, 
                                 start_time=timestamp+datetime.timedelta(seconds=60)), 0, 10).results))
        self.assertEquals(2, len(self.ingester_platform.search(DataEntrySearchCriteria(found_dataset_id, 
                                 start_time=timestamp-datetime.timedelta(seconds=60),
                                 end_time=timestamp+datetime.timedelta(seconds=60)), 0, 10).results))

        work = self.ingester_platform.createUnitOfWork()
        data_entry_3 = DataEntry(dataset2.id, datetime.datetime.now())
        data_entry_3['file'] = FileObject(f_handle=open(os.path.join(
                    os.path.dirname(jcudc24ingesterapi.__file__), "tests/test_ingest.xml")), 
                    mime_type="text/xml")
        work.post(data_entry_3)
        work.commit()
        self.assertIsNotNone(data_entry_3.id)
        
        f_in = self.ingester_platform.getDataEntryStream(dataset2.id, data_entry_3.id, "file")
        self.assertIsNotNone(f_in)
        data = f_in.read()
        f_in.close()
        self.assertLess(0, len(data), "Expected data in file")

#       User enters quality assurance metadata
        quality_metadata_schema = DatasetMetadataSchema()
        quality_metadata_schema.addAttr(String("unit"))
        quality_metadata_schema.addAttr(String("description"))
        quality_metadata_schema.addAttr(Double("value"))
        quality_metadata_schema = self.ingester_platform.post(quality_metadata_schema)
        
        entered_metadata = DatasetMetadataEntry(data_entry_1.dataset, quality_metadata_schema.id)
        entered_metadata['unit'] = "%"
        entered_metadata['description'] = "Percent error"
        entered_metadata['value'] = 0.98

        entered_metadata = self.ingester_platform.post(entered_metadata)
        
        # Now find that metadata
        results = self.ingester_platform.search(DatasetMetadataSearchCriteria(data_entry_1.dataset),0 , 10).results
        self.assertEqual(1, len(results))
        
        
        data_entry_md_schema = DataEntryMetadataSchema("test")
        data_entry_md_schema.addAttr(String("description"))
        data_entry_md_schema.addAttr(Double("value"))
        data_entry_md_schema = self.ingester_platform.post(data_entry_md_schema)
        calibration = DataEntryMetadataEntry(metadata_schema_id=int(data_entry_md_schema.id), dataset_id=dataset2.id, object_id=data_entry_3.id)
        calibration["description"] = "Test"
        calibration["value"] = 1.2

        calibration2 = DataEntryMetadataEntry(metadata_schema_id=int(data_entry_md_schema.id), dataset_id=dataset2.id, object_id=data_entry_3.id)
        calibration2["description"] = "Test2"
        calibration2["value"] = 2.3
        calibration2 = self.ingester_platform.post(calibration2)

        calibrations = self.ingester_platform.search(DataEntryMetadataSearchCriteria(int(81), int(3648)), offset=0, limit=1000)
        self.assertEquals(1, len(calibrations.results))
        self.assertEquals(calibrations.results[0].schema_id, data_entry_md_schema.id)

        self.ingester_platform.delete(calibration2)
        self.ingester_platform.delete(calibration)
        self.ingester_platform.delete(data_entry_md_schema)

#       User changes sampling rate
# FIXME: This test is going to be changed to be done by editing the dataset
#        sampling_rate_changed = Metadata(dataset1.id, type(dataset1), SampleRateMetadataSchema())
#        sampling_rate_changed.change_time = datetime.datetime.now().strftime("%Y-%m-%d %H:%M")
#        sampling_rate_changed.sampling = CustomSampling("file://d:/sampling_scripts/awsome_sampling.py")
#
#        try:
#            sampling_rate_changed = self.ingester_platform.post(sampling_rate_changed)
#            assert(sampling_rate_changed.metadata_id is None, "Sampling rate change failed")
#        except:
#            assert(True, "Sampling rate change failed")

#       User wants some random metadata specific to their project
# FIXME: Not sure what use case this is trying to demonstrate
#        random_metadata_schema =  DataEntryMetadataSchema()
#        random_metadata_schema.addAttr('random_field', Double())

#        random_metadata = Metadata(data_entry.data_entry_id, type(data_entry), random_metadata_schema)
#        random_metadata.random_field = 1.5

#        try:
#            random_metadata = self.ingester_platform.post(random_metadata)
#            assert(random_metadata.metadata_id is None, "random_metadata failed")
#        except:
#            assert(True, "random_metadata failed")

#       User changes the data source of the dataset
        new_data_source = PullDataSource("http://test.com/new_data", "file_handle")
        dataset1.data_source = new_data_source
        dataset1 = self.ingester_platform.post(dataset1)
        self.assertNotEqual(None, dataset1)

#       External, 3rd party searches for data
        # TODO: external 3rd parties should be able to use the api to get data without authentication
        # TODO: I'm not sure exactly how this should work, but the search api could be open access (need spam limitations or something?)

#       Project is disabled/finished
        work = self.ingester_platform.createUnitOfWork()
        work.disable(dataset1.id)
        work.disable(dataset2.id)
        work.commit()

#       Project is obsolete and data should be deleted
        work = self.ingester_platform.createUnitOfWork()
        work.delete(dataset1.id)
        work.delete(dataset2.id)
        work.commit()
Ejemplo n.º 16
0
 def test_dataset(self):
     # Basic instanciation
     ds = Dataset()
     ds = Dataset(data_source=PullDataSource())
     self.assertRaises(TypeError, Dataset, data_source=1)
Ejemplo n.º 17
0
    def test_api_usage(self):
        #       User data that is created by filling out the provisioning interface workflow steps.
        #   General
        title = "Test project"
        data_manager = "A Person"
        project_lead = "Another Person"

        #   Metadata
        project_region = Region("Test Region",
                                ((1, 1), (2, 2), (2, 1), (1, 1)))

        #   Methods & Datasets
        loc1 = Location(11.0, 11.0, "Test Site", 100)
        loc2 = Location(11.0, 11.0, "Test Site", 100)
        loc3 = Location(12.0, 11.0, "Test Site", 100)

        temp_work = self.ingester_platform.createUnitOfWork()
        temperature_schema = DataEntrySchema("Test Temp Schema")
        temperature_schema.addAttr(Double("temperature"))
        temp_work.post(temperature_schema)
        temp_work.commit()

        air_temperature_schema = DataEntrySchema("Air Temp Schema")
        air_temperature_schema.extends = [temperature_schema.id]
        air_temperature_schema = self.ingester_platform.post(
            air_temperature_schema)

        second_level_inheritence_schema = DataEntrySchema("Second Inheritence")
        second_level_inheritence_schema.extends = [air_temperature_schema.id]
        second_level_inheritence_schema = self.ingester_platform.post(
            second_level_inheritence_schema)

        # Check the name is set
        temperature_schema_1 = self.ingester_platform.getSchema(
            temperature_schema.id)
        self.assertIsNotNone(temperature_schema.name)
        self.assertEquals(temperature_schema.name, temperature_schema_1.name)

        file_schema = DataEntrySchema()
        file_schema.addAttr(FileDataType("file"))
        file_schema = self.ingester_platform.post(file_schema)

        dataset1 = Dataset(location=None, schema=temperature_schema.id)
        dataset2 = Dataset(
            location=None,
            schema=file_schema.id,
            data_source=PullDataSource(
                "http://test.com",
                "file_handle",
                processing_script=
                "file://d:/processing_scripts/awsome_processing.py"))

        #        dataset3 = Dataset(None, file_schema, PullDataSource("http://test.com", "file_handle"), CustomSampling("file://d:/sampling_scripts/awsome_sampling.py"), "file://d:/processing_scripts/awsome_processing.py")

        self.cleanup_files.append(dataset2.data_source.processing_script)
        #        self.cleanup_files.push(dataset3.sampling.script)
        #        self.cleanup_files.push(dataset3.processing_script)

        #       Provisioning admin accepts the submitted project
        work = self.ingester_platform.createUnitOfWork()

        work.post(project_region)  # Save the region

        loc1.region = project_region.id  # Set the datasets location to use the projects region
        work.post(loc1)  # Save the location
        dataset1.location = loc1.id  # Set the datasets location
        work.post(dataset1)  # Save the dataset

        loc2.region = project_region.id
        work.post(loc2)
        dataset2.location = loc2.id
        work.post(dataset2)

        work.commit()

        # Region, location and dataset id's will be saved to the project within the provisioning system in some way

        #       User searches for datasets

        # TODO: Nigel? - Define searching api
        found_dataset_id = dataset1.id  # The dataset that has an extended file schema

        #       User manually enters data
        timestamp = datetime.datetime.now()
        data_entry_1 = DataEntry(found_dataset_id, timestamp)
        data_entry_1['temperature'] = 27.8  # Add the extended schema items
        data_entry_1 = self.ingester_platform.post(data_entry_1)
        self.assertIsNotNone(data_entry_1.id)

        timestamp2 = timestamp + datetime.timedelta(seconds=1)
        data_entry_2 = DataEntry(found_dataset_id, timestamp2)
        data_entry_2['temperature'] = 27.8  # Add the extended schema items
        data_entry_2 = self.ingester_platform.post(data_entry_2)

        self.assertEquals(
            2,
            len(
                self.ingester_platform.search(
                    DataEntrySearchCriteria(found_dataset_id), 0, 10).results))
        result = self.ingester_platform.search(
            DataEntrySearchCriteria(found_dataset_id), 0, 1)
        self.assertEquals(2, result.count)
        self.assertEquals(1, len(result.results))
        self.assertEquals(
            1,
            len(
                self.ingester_platform.search(
                    DataEntrySearchCriteria(found_dataset_id), 1, 1).results))

        result = self.ingester_platform.search(
            DataEntrySearchCriteria(found_dataset_id), 2, 1)
        self.assertEquals(0, len(result.results))

        self.assertEquals(
            0,
            len(
                self.ingester_platform.search(
                    DataEntrySearchCriteria(found_dataset_id,
                                            end_time=timestamp -
                                            datetime.timedelta(seconds=60)), 0,
                    10).results))
        self.assertEquals(
            0,
            len(
                self.ingester_platform.search(
                    DataEntrySearchCriteria(found_dataset_id,
                                            start_time=timestamp +
                                            datetime.timedelta(seconds=60)), 0,
                    10).results))
        self.assertEquals(
            2,
            len(
                self.ingester_platform.search(
                    DataEntrySearchCriteria(
                        found_dataset_id,
                        start_time=timestamp - datetime.timedelta(seconds=60),
                        end_time=timestamp + datetime.timedelta(seconds=60)),
                    0, 10).results))

        work = self.ingester_platform.createUnitOfWork()
        data_entry_3 = DataEntry(dataset2.id, datetime.datetime.now())
        data_entry_3['file'] = FileObject(f_handle=open(
            os.path.join(os.path.dirname(jcudc24ingesterapi.__file__),
                         "tests/test_ingest.xml")),
                                          mime_type="text/xml")
        work.post(data_entry_3)
        work.commit()
        self.assertIsNotNone(data_entry_3.id)

        f_in = self.ingester_platform.getDataEntryStream(
            dataset2.id, data_entry_3.id, "file")
        self.assertIsNotNone(f_in)
        data = f_in.read()
        f_in.close()
        self.assertLess(0, len(data), "Expected data in file")

        #       User enters quality assurance metadata
        quality_metadata_schema = DatasetMetadataSchema()
        quality_metadata_schema.addAttr(String("unit"))
        quality_metadata_schema.addAttr(String("description"))
        quality_metadata_schema.addAttr(Double("value"))
        quality_metadata_schema = self.ingester_platform.post(
            quality_metadata_schema)

        entered_metadata = DatasetMetadataEntry(data_entry_1.dataset,
                                                quality_metadata_schema.id)
        entered_metadata['unit'] = "%"
        entered_metadata['description'] = "Percent error"
        entered_metadata['value'] = 0.98

        entered_metadata = self.ingester_platform.post(entered_metadata)

        # Now find that metadata
        results = self.ingester_platform.search(
            DatasetMetadataSearchCriteria(data_entry_1.dataset), 0, 10).results
        self.assertEqual(1, len(results))

        data_entry_md_schema = DataEntryMetadataSchema("test")
        data_entry_md_schema.addAttr(String("description"))
        data_entry_md_schema.addAttr(Double("value"))
        data_entry_md_schema = self.ingester_platform.post(
            data_entry_md_schema)
        calibration = DataEntryMetadataEntry(metadata_schema_id=int(
            data_entry_md_schema.id),
                                             dataset_id=dataset2.id,
                                             object_id=data_entry_3.id)
        calibration["description"] = "Test"
        calibration["value"] = 1.2

        calibration2 = DataEntryMetadataEntry(metadata_schema_id=int(
            data_entry_md_schema.id),
                                              dataset_id=dataset2.id,
                                              object_id=data_entry_3.id)
        calibration2["description"] = "Test2"
        calibration2["value"] = 2.3
        calibration2 = self.ingester_platform.post(calibration2)

        calibrations = self.ingester_platform.search(
            DataEntryMetadataSearchCriteria(int(81), int(3648)),
            offset=0,
            limit=1000)
        self.assertEquals(1, len(calibrations.results))
        self.assertEquals(calibrations.results[0].schema_id,
                          data_entry_md_schema.id)

        self.ingester_platform.delete(calibration2)
        self.ingester_platform.delete(calibration)
        self.ingester_platform.delete(data_entry_md_schema)

        #       User changes sampling rate
        # FIXME: This test is going to be changed to be done by editing the dataset
        #        sampling_rate_changed = Metadata(dataset1.id, type(dataset1), SampleRateMetadataSchema())
        #        sampling_rate_changed.change_time = datetime.datetime.now().strftime("%Y-%m-%d %H:%M")
        #        sampling_rate_changed.sampling = CustomSampling("file://d:/sampling_scripts/awsome_sampling.py")
        #
        #        try:
        #            sampling_rate_changed = self.ingester_platform.post(sampling_rate_changed)
        #            assert(sampling_rate_changed.metadata_id is None, "Sampling rate change failed")
        #        except:
        #            assert(True, "Sampling rate change failed")

        #       User wants some random metadata specific to their project
        # FIXME: Not sure what use case this is trying to demonstrate
        #        random_metadata_schema =  DataEntryMetadataSchema()
        #        random_metadata_schema.addAttr('random_field', Double())

        #        random_metadata = Metadata(data_entry.data_entry_id, type(data_entry), random_metadata_schema)
        #        random_metadata.random_field = 1.5

        #        try:
        #            random_metadata = self.ingester_platform.post(random_metadata)
        #            assert(random_metadata.metadata_id is None, "random_metadata failed")
        #        except:
        #            assert(True, "random_metadata failed")

        #       User changes the data source of the dataset
        new_data_source = PullDataSource("http://test.com/new_data",
                                         "file_handle")
        dataset1.data_source = new_data_source
        dataset1 = self.ingester_platform.post(dataset1)
        self.assertNotEqual(None, dataset1)

        #       External, 3rd party searches for data
        # TODO: external 3rd parties should be able to use the api to get data without authentication
        # TODO: I'm not sure exactly how this should work, but the search api could be open access (need spam limitations or something?)

        #       Project is disabled/finished
        work = self.ingester_platform.createUnitOfWork()
        work.disable(dataset1.id)
        work.disable(dataset2.id)
        work.commit()

        #       Project is obsolete and data should be deleted
        work = self.ingester_platform.createUnitOfWork()
        work.delete(dataset1.id)
        work.delete(dataset2.id)
        work.commit()