def ClickOnApply(self):
"""
get selected pdfs structure
make commands with argparser parameter
apply cmds to subprocess
"""
self.PDFBox.verbose = self.verbose
pdfs = self.PDFBox.GetSelectedPDFs()
if not pdfs:
wx.CallAfter(pub.sendMessage,
"MAIN_FRAME.MSG.ERROR",
data="\nPlease select PDFs first\n in: " +
self.GetName())
return
#cmd_parameter = self.AP.GetParameter()
cmd_command = self.AP.get_fullfile_command(ShowFileIO=True)
joblist = []
#--- del "stage"
cmd_list = cmd_command.split()
for k in [
"--meg_stage", "--eeg_stage", "-smeg", "-seeg", "--list_path"
]:
for idx in range(len(cmd_list)):
if cmd_list[idx].startswith(k):
del cmd_list[idx]
break
cmd_command = " ".join(cmd_list)
# print(cmd_command)
for subject_id in pdfs.get('mne'):
for idx in range(len(pdfs['mne'][subject_id])):
if not pdfs['mne'][subject_id][idx]["selected"]: continue
cmd = cmd_command
eeg_idx = pdfs["eeg_index"][subject_id][idx]
cmd += " --meg_stage=" + pdfs["stage"]
cmd += " -fmeg " + pdfs["mne"][subject_id][idx]["pdf"]
cmd += " --eeg_stage=" + pdfs["stage"]
cmd += " -feeg " + pdfs["eeg"][subject_id][eeg_idx]["pdf"]
#cmd += " "+ cmd_parameter
joblist.append(cmd)
if self.verbose:
wx.LogMessage(
jb.pp_list2str(joblist, head="MEEG Merger Job list: "))
wx.LogMessage(
jb.pp_list2str(self.HostCtrl.HOST.GetParameter(),
head="HOST Parameter"))
if joblist:
# wx.CallAfter(pub.sendMessage,"SUBPROCESS.RUN.START",jobs=joblist,host_parameter=self.HostCtrl.HOST.GetParameter(),verbose=self.verbose)
wx.CallAfter(self.SubProcess.run,
jobs=joblist,
host_parameter=self.HostCtrl.HOST.GetParameter(),
verbose=self.verbose)
def ClickOnApply(self):
"""
apply to subprocess
"""
self.PDFBox.verbose = self.verbose
pdfs = self.PDFBox.GetSelectedPDFs(
) # returns list of list [[pdf,extention] ..]
if not pdfs:
wx.CallAfter(pub.sendMessage,
"MAIN_FRAME.MSG.ERROR",
data="\nPlease select PDFs first\n in: " +
self.GetName())
return
cmd_command = self.AP.get_fullfile_command(ShowFileIO=False)
joblist = []
#--- del "--fif_extention="
cmd_list = []
for s in cmd_command.split():
if s.startswith("--fif"):
continue #del cmd_list[idx]
cmd_list.append(s)
cmd_command = " ".join(cmd_list)
fif_stage = self.GetFIFStage()
logger.info("FIF stage 2: {}".format(fif_stage))
for pdf in pdfs:
cmd = cmd_command
#cmd += " --pdf_stage=" + os.path.expandvars( os.path.expanduser(os.path.dirname( self.PDFBox.GetStage() +"/"+ pdf )))
cmd += " --pdf_stage=" + self.PDFBox.GetStage(
) + "/" + os.path.dirname(pdf[0])
cmd += " --fif_stage=" + fif_stage
cmd += " --fif_extention=" + pdf[1]
joblist.append(cmd)
# logger.info(joblist)
if self.verbose:
wx.LogMessage(
jb.pp_list2str(joblist, head="MEEG Merger Job list: "))
wx.LogMessage(
jb.pp_list2str(self.HostCtrl.HOST.GetParameter(),
head="HOST Parameter"))
if joblist:
# wx.CallAfter(pub.sendMessage,"SUBPROCESS.RUN.START",jobs=joblist,host_parameter=self.HostCtrl.HOST.GetParameter(),verbose=self.verbose)
wx.CallAfter(self.SubProcess.run,
jobs=joblist,
host_parameter=self.HostCtrl.HOST.GetParameter(),
verbose=self.verbose)
def UpdatePropertyGrid(self, name=None, TMP=None):
"""
update Template Parameter within a wx.PropertyGrid
Parameter
---------
name: name of experiment
TMP : the template structure as dict
"""
# print(self.Template.TMP._template_data)
if name:
self.Template.update_template(name=name)
if TMP:
data = TMP.template_data
else:
data = self.Template.TMP.template_data
if self.verbose:
wx.LogMessage("Update " + self.title + " : " +
self.Template.GetExperiment()
) #data["experiment"].get("name"))
wx.LogMessage(jb.pp_list2str(data))
self.PropertyGridNoteBoook.update(data=data)
def ClickOnSave(self):
"""
show File Save DLG
save template data in json format
"""
data = self.PropertyGridNoteBoook.GetData()
#--- make file name
self.Template.TMP.template_name = self.GetDataName(data)
#fjson = self.Template.TMP.template_full_filename
SaveDLG = wx.FileDialog(
self,
message='Save Template data.',
wildcard='template (*.' + self.Template.TMP.template_extention +
')|*.json|All Files|*',
style=wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT | wx.FD_PREVIEW)
SaveDLG.SetDirectory(self.Template.TMP.template_path)
SaveDLG.SetFilename(self.Template.TMP.template_filename)
if SaveDLG.ShowModal() == wx.ID_OK:
#--- update templatev info
data["info"] = self.Template.TMP.update_template_info(
gui_version=__version__)
fout = os.path.join(SaveDLG.GetDirectory(), SaveDLG.GetFilename())
if self.verbose:
wx.LogMessage(" ---> experiment template : " +
data["experiment"]["name"])
wx.LogMessage(" --> saving experiment template file : " +
fout)
if self.debug:
wx.LogDebug(" -> experiment template data: \n" +
json.dumps(data, indent=4))
try:
with open(fout, "w") as f:
f.write(json.dumps(data, indent=4))
os.fsync(f.fileno()) # make to disk
f.close()
if self.verbose:
wx.LogMessage(
" ---> done saving experiment template file: " + fout)
#--- update Experiment Template lists and update ExpTmp ComboBox with new template name
#--- TEST_jumeg_experiment_template.json => TEST
name = SaveDLG.GetFilename().split(
"_" + self.Template.TMP.template_postfix)[0]
self.Template.update_template(name=name)
except Exception as e:
wx.LogError("Save failed!\n" + jb.pp_list2str(
e, head="Error writing experiment template file: " + fout))
pub.sendMessage("MAIN_FRAME.MSG.ERROR",
data="Error writing template file: " + fout)
raise
finally:
SaveDLG.Destroy()
def info(self):
logger.info(" -> PDFs:\n -> " + "\n".join(self.pdfs))
if self.debug:
logger.debug(jb.pp_list2str(self.__dict__))
def log_info_process(self):
wx.LogMessage(jb.pp_list2str(self.cmd,head=" -->SubProcess cmd:"))
def msg(self,msg,head=""):
if isinstance(msg,(list,dict)):
wx.LogMessage(jb.pp_list2str(msg,head=self.msg_prefix +" "+head +"\n"))
else:
wx.LogMessage(self.msg_prefix +" "+head +"\n"+msg)
def msg_cmd(self,cmd):
wx.LogMessage(jb.pp_list2str(cmd,head=self.msg_prefix + " cmd:"))