def post(self):
form = cgi.FieldStorage()
logger.info(form)
thefile = form['file-0']
iter_html=loop_html(thefile)
templatepath = os.path.dirname(__file__) + '/../templates/'
ChkCookie = self.request.cookies.get("ubercookie")
# html = uber_lib.SkinChk(ChkCookie)
# html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'kabam','page':'batchinput'})
# html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = template.render(templatepath + '04uberbatch_start.html', {
'model':'kabam',
'model_attributes':'Kabam Batch Output'})
html = html + kabam_tables.timestamp("",jid_batch[0])
html = html + iter_html
# html = html + template.render(templatepath + 'kabam-batchoutput-jqplot.html', {})
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {'sub_title': ''})
# html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
rest_funcs.batch_save_dic(html, [x.__dict__ for x in kabam_obj], 'kabam', 'batch', jid_batch[0], ChkCookie, templatepath)
self.response.out.write(html)
def post(self):
form = cgi.FieldStorage()
chemical_name = form.getvalue('name')
l_kow = float(form.getvalue('lkow'))
k_oc = float(form.getvalue('Koc'))
c_wdp_2 = float(form.getvalue('beec'))
c_wdp = float(form.getvalue('beec')) / 1000000
water_column_EEC = float(form.getvalue('weec'))
c_wto = float(water_column_EEC) / 1000000
mineau_scaling_factor = float(form.getvalue('sf'))
x_poc = float(form.getvalue('cpoc'))
x_doc = float(form.getvalue('cdoc'))
c_ox = float(form.getvalue('cox'))
w_t = float(form.getvalue('wt'))
c_ss = float(form.getvalue('css'))
oc = float(form.getvalue('oc'))/100
k_ow = 10**(float(l_kow))
Species_of_the_tested_bird = form.getvalue('Species_of_the_tested_bird')
bw_quail = form.getvalue('bw_quail')
bw_duck = form.getvalue('bw_duck')
bwb_other = form.getvalue('bwb_other')
avian_ld50 = float(form.getvalue('ald50'))
avian_lc50 = float(form.getvalue('alc50'))
avian_noaec = float(form.getvalue('aNOAEC'))
m_species = form.getvalue('m_species')
bw_rat=form.getvalue('bw_rat')
bwm_other=form.getvalue('bwm_other')
# print 'weight=', body_weight_of_the_tested_mamm_other
mammalian_ld50 = float(form.getvalue('mld50'))
mammalian_lc50 = float(form.getvalue('mlc50'))
mammalian_chronic_endpoint = float(form.getvalue('m_chronic'))
# body_weight_of_the_assessed_mamm = float(form.getvalue('bw_assess_m'))
#diet_for_large_fish = form.getvalue('Diet_lfish')
lf_p_sediment = float(form.getvalue('lfish_p_sediment'))/100
lf_p_phytoplankton = float(form.getvalue('lfish_p_phyto'))/100
lf_p_zooplankton = float(form.getvalue('lfish_p_zoo'))/100
lf_p_benthic_invertebrates = float(form.getvalue('lfish_p_beninv'))/100
lf_p_filter_feeders = float(form.getvalue('lfish_p_ff'))/100
lf_p_small_fish = float(form.getvalue('lfish_p_sfish'))/100
lf_p_medium_fish = float(form.getvalue('lfish_p_mfish'))/100
#diet_for_medium_fish = form.getvalue('Diet_mfish')
mf_p_sediment = float(form.getvalue('mfish_p_sediment'))
#print type(mf_p_sediment)
mf_p_sediment = float(mf_p_sediment)
mf_p_phytoplankton = float(form.getvalue('mfish_p_phyto'))
mf_p_zooplankton = float(form.getvalue('mfish_p_zoo'))
mf_p_benthic_invertebrates = float(form.getvalue('mfish_p_beninv'))/100
mf_p_filter_feeders = float(form.getvalue('mfish_p_ff'))
mf_p_small_fish = float(form.getvalue('mfish_p_sfish'))/100
#diet_for_small_fish = form.getvalue('Diet_sfish')
sf_p_sediment = float(form.getvalue('sfish_p_sediment'))
sf_p_phytoplankton = float(form.getvalue('sfish_p_phyto'))
sf_p_zooplankton = float(form.getvalue('sfish_p_zoo'))/100
sf_p_benthic_invertebrates = float(form.getvalue('sfish_p_beninv'))/100
sf_p_filter_feeders = float(form.getvalue('sfish_p_ff'))
#diet_for_filter_feeder = form.getvalue('Diet_ff')
ff_p_sediment = float(form.getvalue('ff_p_sediment'))/100
ff_p_phytoplankton = float(form.getvalue('ff_p_phyto'))/100
ff_p_zooplankton = float(form.getvalue('ff_p_zoo'))/100
ff_p_benthic_invertebrates = float(form.getvalue('ff_p_beninv'))
#diet_for_invertebrates = form.getvalue('Diet_invert')
beninv_p_sediment = float(form.getvalue('beninv_p_sediment'))/100
beninv_p_phytoplankton = float(form.getvalue('beninv_p_phyto'))/100
beninv_p_zooplankton = float(form.getvalue('beninv_p_zoo'))/100
#diet_for_zooplankton = form.getvalue('Diet_zoo')
zoo_p_sediment = float(form.getvalue('zoo_p_sediment'))
zoo_p_phyto = float(form.getvalue('zoo_p_phyto'))/100
#characteristics_sediment = form.getvalue('char_s')
s_lipid = float(form.getvalue('s_lipid'))/100
s_NLOM = float(form.getvalue('s_NLOM'))/100
s_water = float(form.getvalue('s_water'))/100
s_respire = form.getvalue('s_respire')
#characteristics_phytoplankton = form.getvalue('char_phyto')
v_lb_phytoplankton = float(form.getvalue('phyto_lipid'))/100
v_nb_phytoplankton = float(form.getvalue('phyto_NLOM'))/100
v_wb_phytoplankton = float(form.getvalue('phyto_water'))/100
phyto_respire = form.getvalue('phyto_respire')
#characteristics_zooplankton = form.getvalue('char_zoo')
wb_zoo = float(form.getvalue('zoo_ww'))
v_lb_zoo = float(form.getvalue('zoo_lipid'))/100
v_nb_zoo = float(form.getvalue('zoo_NLOM'))/100
v_wb_zoo = float(form.getvalue('zoo_water'))/100
zoo_respire = form.getvalue('zoo_respire')
#characteristics_benthic_invertebrates = form.getvalue('char_beninv')
wb_beninv = float(form.getvalue('beninv_ww'))
v_lb_beninv = float(form.getvalue('beninv_lipid'))/100
v_nb_beninv = float(form.getvalue('beninv_NLOM'))/100
v_wb_beninv = float(form.getvalue('beninv_water'))/100
beninv_respire = form.getvalue('beninv_respire')
#characteristics_ff = form.getvalue('char_ff')
wb_ff = float(form.getvalue('ff_ww'))
v_lb_ff = float(form.getvalue('ff_lipid'))/100
v_nb_ff = float(form.getvalue('ff_NLOM'))/100
v_wb_ff = float(form.getvalue('ff_water'))/100
ff_respire = form.getvalue('ff_respire')
#characteristics_smfish = form.getvalue('char_sfish')
wb_sf = float(form.getvalue('sfish_ww'))
v_lb_sf = float(form.getvalue('sfish_lipid'))/100
v_nb_sf = float(form.getvalue('sfish_NLOM'))/100
v_wb_sf = float(form.getvalue('sfish_water'))/100
sfish_respire = form.getvalue('sfish_respire')
#characteristics_medfish = form.getvalue('char_mfish')
wb_mf = float(form.getvalue('mfish_ww'))
v_lb_mf = float(form.getvalue('mfish_lipid'))/100
v_nb_mf = float(form.getvalue('mfish_NLOM'))/100
v_wb_mf = float(form.getvalue('mfish_water'))/100
mfish_respire = form.getvalue('mfish_respire')
#characteristics_larfish = form.getvalue('char_lfish')
wb_lf = float(form.getvalue('lfish_ww'))
v_lb_lf = float(form.getvalue('lfish_lipid'))/100
v_nb_lf = float(form.getvalue('lfish_NLOM'))/100
v_wb_lf = float(form.getvalue('lfish_water'))/100
lfish_respire = form.getvalue('lfish_respire')
rate_constants = form.getvalue('rate_c')
# phytoplankton growth rate constant
kg_phytoplankton = 0.1
# phytoplankton diet uptake rate constant
kd_phytoplankton = 0
#phytoplankton fecal elimination rate constant
ke_phytoplankton = 0
# fraction of respiratory ventilation involving overlying water
mo_phytoplankton = 1
# fraction of respiratory ventilation involving pore water
mp_phytoplankton = 0
# rate constant for pesticide metabolic transformation
km_phytoplankton = 0
# rate constant for pesticide metabolic transformation
km_zoo = 0
# k_bw_phytoplankton = 0
# k_bw_zoo = 0
# k_bw_beninv = 0
# k_bw_ff = 0
# k_bw_sf = 0
# k_bw_mf = 0
# k_bw_lf = 0
# cb_phytoplankton_v = 0
# cb_zoo_v = 0
# cb_beninv_v = 0
# cb_ff_v = 0
# cb_sf_v = 0
# cb_mf_v = 0
# cb_lf_v = 0
k1_phytoplankton = float(form.getvalue('phyto_k1'))
k2_phytoplankton = float(form.getvalue('phyto_k2'))
kd_phytoplankton = float(form.getvalue('phyto_kd'))
ke_phytoplankton = float(form.getvalue('phyto_ke'))
km_phytoplankton = float(form.getvalue('phyto_km'))
k1_zoo = float(form.getvalue('zoo_k1'))
k2_zoo = float(form.getvalue('zoo_k2'))
kd_zoo = float(form.getvalue('zoo_kd'))
ke_zoo = float(form.getvalue('zoo_ke'))
km_zoo = float(form.getvalue('zoo_km'))
k1_beninv = float(form.getvalue('beninv_k1'))
k2_beninv = float(form.getvalue('beninv_k2'))
kd_beninv = float(form.getvalue('beninv_kd'))
ke_beninv = float(form.getvalue('beninv_ke'))
km_beninv = float(form.getvalue('beninv_km'))
k1_ff = float(form.getvalue('ff_k1'))
k2_ff = float(form.getvalue('ff_k2'))
kd_ff = float(form.getvalue('ff_kd'))
ke_ff = float(form.getvalue('ff_ke'))
km_ff = float(form.getvalue('ff_km'))
k1_sf = float(form.getvalue('sfish_k1'))
k2_sf = float(form.getvalue('sfish_k2'))
kd_sf = float(form.getvalue('sfish_kd'))
ke_sf = float(form.getvalue('sfish_ke'))
km_sf = float(form.getvalue('sfish_km'))
k1_mf = float(form.getvalue('mfish_k1'))
k2_mf = float(form.getvalue('mfish_k2'))
kd_mf = float(form.getvalue('mfish_kd'))
ke_mf = float(form.getvalue('mfish_ke'))
km_mf = float(form.getvalue('mfish_km'))
k1_lf = float(form.getvalue('lfish_k1'))
k2_lf = float(form.getvalue('lfish_k2'))
kd_lf = float(form.getvalue('lfish_kd'))
ke_lf = float(form.getvalue('lfish_ke'))
km_lf = float(form.getvalue('lfish_km'))
# else: # calculate values for rate constants
# k_bw_phytoplankton = kabam_model.k_bw_phytoplankton_f(v_lb_phytoplankton, v_nb_phytoplankton, k_ow, v_wb_phytoplankton)
# k1_phytoplankton = k1_phytoplankton_f(k_ow)
# k2_phytoplankton = k2_phytoplankton_f(k_ow, k1_phytoplankton, k_bw_phytoplankton)
# k_bw_zoo = k_bw_zoo_f(v_lb_zoo, k_ow, v_nb_zoo, v_wb_zoo)
# k1_zoo = k1_zoo_f(k_ow, wb_zoo, c_ox)
# k2_zoo = k2_zoo_f(k_bw_zoo, k1_zoo)
# kd_zoo = kd_zoo_f(k_ow, wb_zoo, w_t)
# ke_zoo = ke_zoo_f(k_ow, wb_zoo, v_lb_zoo, v_nb_zoo, zoo_p_sediment, s_lipid, s_NLOM, zoo_p_phyto, v_lb_phytoplankton, v_nb_phytoplankton, s_water, v_wb_phytoplankton, w_t, v_wb_zoo)
# k_bw_beninv = k_bw_beninv_f(v_lb_beninv, k_ow, v_nb_beninv, v_wb_beninv)
# k1_beninv = k1_beninv_f(k_ow, wb_beninv, c_ox)
# k2_beninv = k2_beninv_f(k1_beninv, k_bw_beninv)
# kd_beninv = kd_beninv_f(k_ow, wb_beninv, w_t)
# ke_beninv = ke_beninv_f(k_ow, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_beninv, w_t, v_lb_beninv, v_nb_beninv, v_wb_beninv)
# k_bw_ff = k_bw_ff_f(v_lb_ff, k_ow, v_nb_ff, v_wb_ff)
# k1_ff = k1_ff_f(k_ow, wb_ff, c_ox)
# k2_ff = k2_ff_f(k1_ff, k_bw_ff)
# kd_ff = kd_ff_f(k_ow, wb_ff, w_t, c_ss, c_ox)
# ke_ff = ke_ff_f(k_ow, ff_p_sediment, v_lb_ff, v_nb_ff, v_wb_ff, ff_p_phytoplankton, c_ss, c_ox, s_lipid, v_lb_phytoplankton, ff_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_ff, w_t)
# k_bw_sf = k_bw_sf_f(v_lb_sf, k_ow, v_nb_sf, v_wb_sf)
# k1_sf = k1_sf_f(k_ow, wb_sf, c_ox)
# k2_sf = k2_sf_f(k1_sf, k_bw_sf)
# kd_sf = kd_sf_f(k_ow, wb_sf, w_t, c_ss, c_ox)
# ke_sf = ke_sf_f(k_ow, v_lb_sf, v_nb_sf, v_wb_sf, c_ox, ff_p_sediment, s_lipid, ff_p_phytoplankton, ff_p_zooplankton, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, c_ss, wb_ff, wb_sf, w_t, v_nb_beninv, v_nb_ff, sf_p_sediment, sf_p_phytoplankton, v_lb_phytoplankton, sf_p_benthic_invertebrates, v_lb_beninv, sf_p_zooplankton, v_lb_zoo, v_wb_beninv, v_wb_ff, sf_p_filter_feeders, v_lb_ff)
# k_bw_mf = k_bw_mf_f(v_lb_mf, k_ow, v_nb_mf, v_wb_mf)
# k1_mf = k1_mf_f(k_ow, wb_mf, c_ox)
# k2_mf = k2_mf_f(k1_mf, k_bw_mf)
# kd_mf = kd_mf_f(k_ow, wb_mf, w_t, c_ss, c_ox)
# ke_mf = ke_mf_f(k_ow, v_lb_mf, v_nb_mf, v_wb_mf, wb_mf, w_t, s_lipid, v_lb_phytoplankton, v_lb_beninv, v_lb_zoo, v_lb_ff, v_lb_sf, s_NLOM, v_nb_phytoplankton, v_nb_beninv, v_nb_zoo, v_nb_ff, v_nb_sf, mf_p_sediment, s_water, mf_p_phytoplankton, v_wb_phytoplankton, mf_p_benthic_invertebrates, v_wb_beninv, mf_p_zooplankton, v_wb_zoo, mf_p_filter_feeders, v_wb_ff, mf_p_small_fish, v_wb_sf)
# k_bw_lf = k_bw_lf_f(v_lb_lf, k_ow, v_nb_lf, v_wb_lf)
# k1_lf = k1_lf_f(k_ow, wb_lf, c_ox)
# k2_lf = k2_lf_f(k1_lf, k_bw_lf)
# kd_lf = kd_lf_f(k_ow, wb_lf, w_t, c_ss, c_ox)
# ke_lf = ke_lf_f(k_ow, v_lb_lf, v_nb_lf, v_wb_lf, wb_lf, s_lipid, lf_p_sediment, v_lb_phytoplankton, lf_p_phytoplankton, v_lb_beninv, v_lb_zoo, lf_p_benthic_invertebrates, lf_p_zooplankton, lf_p_filter_feeders, v_lb_ff, v_lb_sf, lf_p_small_fish, s_water, lf_p_medium_fish, v_nb_mf, v_wb_phytoplankton, v_wb_beninv, v_wb_zoo, v_wb_ff, v_wb_sf, wb_mf, w_t, mf_p_sediment, s_NLOM, mf_p_phytoplankton, v_nb_phytoplankton, v_lb_mf, v_wb_mf, mf_p_benthic_invertebrates, v_nb_beninv, mf_p_zooplankton, v_nb_zoo, mf_p_filter_feeders, v_nb_ff, mf_p_small_fish, v_nb_sf)
# cb_phytoplankton_v = cb_phytoplankton_f(k1_phytoplankton, c_wdp, c_wto, k2_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_ow, x_doc, x_poc)
# cb_zoo_v = cb_zoo_f(k_ow, wb_zoo, w_t, k1_phytoplankton, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wdp, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, oc, x_poc, x_doc, v_lb_phytoplankton, v_nb_phytoplankton, v_wb_phytoplankton, k_bw_phytoplankton, zoo_p_phyto, zoo_p_sediment)
# cb_beninv_v = cb_beninv_f(x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv)
# cb_ff_v = cb_ff_f(k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, w_t, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates)
# cb_sf_v = cb_sf_f(wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_mf_v = cb_mf_f(k1_mf, k2_mf, kd_mf, ke_mf, wb_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_lf_v = cb_lf_f(kd_lf, k2_lf, ke_lf, k1_lf, wb_lf, wb_mf, lf_p_sediment, lf_p_phytoplankton, lf_p_zooplankton, lf_p_benthic_invertebrates, k1_mf, k2_mf, kd_mf, ke_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, lf_p_filter_feeders, lf_p_small_fish, lf_p_medium_fish, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# k_bw_phytoplankton = k_bw_phytoplankton_f(v_lb_phytoplankton, v_nb_phytoplankton, k_ow, v_wb_phytoplankton)
# k1_phytoplankton = k1_phytoplankton_f(k_ow)
# k2_phytoplankton = k2_phytoplankton_f(k_ow, k1_phytoplankton, k_bw_phytoplankton)
# k_bw_zoo = k_bw_zoo_f(v_lb_zoo, k_ow, v_nb_zoo, v_wb_zoo)
# k1_zoo = k1_zoo_f(k_ow, wb_zoo, c_ox)
# k2_zoo = k2_zoo_f(k_bw_zoo, k1_zoo)
# kd_zoo = kd_zoo_f(k_ow, wb_zoo, w_t)
# ke_zoo = ke_zoo_f(k_ow, wb_zoo, v_lb_zoo, v_nb_zoo, zoo_p_sediment, s_lipid, s_NLOM, zoo_p_phyto, v_lb_phytoplankton, v_nb_phytoplankton, s_water, v_wb_phytoplankton, w_t, v_wb_zoo)
# k_bw_beninv = k_bw_beninv_f(v_lb_beninv, k_ow, v_nb_beninv, v_wb_beninv)
# k1_beninv = k1_beninv_f(k_ow, wb_beninv, c_ox)
# k2_beninv = k2_beninv_f(k1_beninv, k_bw_beninv)
# kd_beninv = kd_beninv_f(k_ow, wb_beninv, w_t)
# ke_beninv = ke_beninv_f(k_ow, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_beninv, w_t, v_lb_beninv, v_nb_beninv, v_wb_beninv)
# k_bw_ff = k_bw_ff_f(v_lb_ff, k_ow, v_nb_ff, v_wb_ff)
# k1_ff = k1_ff_f(k_ow, wb_ff, c_ox)
# k2_ff = k2_ff_f(k1_ff, k_bw_ff)
# kd_ff = kd_ff_f(k_ow, wb_ff, w_t, c_ss, c_ox)
# ke_ff = ke_ff_f(k_ow, ff_p_sediment, v_lb_ff, v_nb_ff, v_wb_ff, ff_p_phytoplankton, c_ss, c_ox, s_lipid, v_lb_phytoplankton, ff_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_ff, w_t)
# k_bw_sf = k_bw_sf_f(v_lb_sf, k_ow, v_nb_sf, v_wb_sf)
# k1_sf = k1_sf_f(k_ow, wb_sf, c_ox)
# k2_sf = k2_sf_f(k1_sf, k_bw_sf)
# kd_sf = kd_sf_f(k_ow, wb_sf, w_t, c_ss, c_ox)
# ke_sf = ke_sf_f(k_ow, v_lb_sf, v_nb_sf, v_wb_sf, c_ox, ff_p_sediment, s_lipid, ff_p_phytoplankton, ff_p_zooplankton, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, c_ss, wb_ff, wb_sf, w_t, v_nb_beninv, v_nb_ff, sf_p_sediment, sf_p_phytoplankton, v_lb_phytoplankton, sf_p_benthic_invertebrates, v_lb_beninv, sf_p_zooplankton, v_lb_zoo, v_wb_beninv, v_wb_ff, sf_p_filter_feeders, v_lb_ff)
# k_bw_mf = k_bw_mf_f(v_lb_mf, k_ow, v_nb_mf, v_wb_mf)
# k1_mf = k1_mf_f(k_ow, wb_mf, c_ox)
# k2_mf = k2_mf_f(k1_mf, k_bw_mf)
# kd_mf = kd_mf_f(k_ow, wb_mf, w_t, c_ss, c_ox)
# ke_mf = ke_mf_f(k_ow, v_lb_mf, v_nb_mf, v_wb_mf, wb_mf, w_t, s_lipid, v_lb_phytoplankton, v_lb_beninv, v_lb_zoo, v_lb_ff, v_lb_sf, s_NLOM, v_nb_phytoplankton, v_nb_beninv, v_nb_zoo, v_nb_ff, v_nb_sf, mf_p_sediment, s_water, mf_p_phytoplankton, v_wb_phytoplankton, mf_p_benthic_invertebrates, v_wb_beninv, mf_p_zooplankton, v_wb_zoo, mf_p_filter_feeders, v_wb_ff, mf_p_small_fish, v_wb_sf)
# k_bw_lf = k_bw_lf_f(v_lb_lf, k_ow, v_nb_lf, v_wb_lf)
# k1_lf = k1_lf_f(k_ow, wb_lf, c_ox)
# k2_lf = k2_lf_f(k1_lf, k_bw_lf)
# kd_lf = kd_lf_f(k_ow, wb_lf, w_t, c_ss, c_ox)
# ke_lf = ke_lf_f(k_ow, v_lb_lf, v_nb_lf, v_wb_lf, wb_lf, s_lipid, lf_p_sediment, v_lb_phytoplankton, lf_p_phytoplankton, v_lb_beninv, v_lb_zoo, lf_p_benthic_invertebrates, lf_p_zooplankton, lf_p_filter_feeders, v_lb_ff, v_lb_sf, lf_p_small_fish, s_water, lf_p_medium_fish, v_nb_mf, v_wb_phytoplankton, v_wb_beninv, v_wb_zoo, v_wb_ff, v_wb_sf, wb_mf, w_t, mf_p_sediment, s_NLOM, mf_p_phytoplankton, v_nb_phytoplankton, v_lb_mf, v_wb_mf, mf_p_benthic_invertebrates, v_nb_beninv, mf_p_zooplankton, v_nb_zoo, mf_p_filter_feeders, v_nb_ff, mf_p_small_fish, v_nb_sf)
# cb_phytoplankton_v = cb_phytoplankton_f(k1_phytoplankton, c_wdp, c_wto, k2_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_ow, x_doc, x_poc)
# cb_zoo_v = cb_zoo_f(k_ow, wb_zoo, w_t, k1_phytoplankton, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wdp, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, oc, x_poc, x_doc, v_lb_phytoplankton, v_nb_phytoplankton, v_wb_phytoplankton, k_bw_phytoplankton, zoo_p_phyto, zoo_p_sediment)
# cb_beninv_v = cb_beninv_f(x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv)
# cb_ff_v = cb_ff_f(k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, w_t, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates)
# cb_sf_v = cb_sf_f(wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_mf_v = cb_mf_f(k1_mf, k2_mf, kd_mf, ke_mf, wb_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_lf_v = cb_lf_f(kd_lf, k2_lf, ke_lf, k1_lf, wb_lf, wb_mf, lf_p_sediment, lf_p_phytoplankton, lf_p_zooplankton, lf_p_benthic_invertebrates, k1_mf, k2_mf, kd_mf, ke_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, lf_p_filter_feeders, lf_p_small_fish, lf_p_medium_fish, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
kabam_obj = kabam_model.kabam(
True,True,'single',chemical_name,l_kow,k_oc,c_wdp,water_column_EEC,c_wto,mineau_scaling_factor,x_poc,x_doc,c_ox,w_t,c_ss,oc,k_ow,
Species_of_the_tested_bird,bw_quail,bw_duck,bwb_other,avian_ld50,avian_lc50,avian_noaec,m_species,bw_rat,bwm_other,mammalian_ld50,mammalian_lc50,mammalian_chronic_endpoint,
lf_p_sediment,lf_p_phytoplankton,lf_p_zooplankton,lf_p_benthic_invertebrates,lf_p_filter_feeders,lf_p_small_fish,lf_p_medium_fish,
mf_p_sediment,mf_p_phytoplankton,mf_p_zooplankton,mf_p_benthic_invertebrates,mf_p_filter_feeders,mf_p_small_fish,
sf_p_sediment,sf_p_phytoplankton,sf_p_zooplankton,sf_p_benthic_invertebrates,sf_p_filter_feeders,
ff_p_sediment,ff_p_phytoplankton,ff_p_zooplankton,ff_p_benthic_invertebrates,
beninv_p_sediment,beninv_p_phytoplankton,beninv_p_zooplankton,
zoo_p_sediment,zoo_p_phyto,
s_lipid,s_NLOM,s_water,
v_lb_phytoplankton,v_nb_phytoplankton,v_wb_phytoplankton,wb_zoo,v_lb_zoo,v_nb_zoo,v_wb_zoo,wb_beninv,v_lb_beninv,v_nb_beninv,v_wb_beninv,wb_ff,v_lb_ff,v_nb_ff,v_wb_ff,wb_sf,v_lb_sf,v_nb_sf,v_wb_sf,wb_mf,v_lb_mf,v_nb_mf,v_wb_mf,wb_lf,v_lb_lf,v_nb_lf,v_wb_lf,
kg_phytoplankton,kd_phytoplankton,ke_phytoplankton,mo_phytoplankton,mp_phytoplankton,km_phytoplankton,km_zoo,
k1_phytoplankton,k2_phytoplankton,
k1_zoo,k2_zoo,kd_zoo,ke_zoo,k1_beninv,k2_beninv,kd_beninv,ke_beninv,km_beninv,
k1_ff,k2_ff,kd_ff,ke_ff,km_ff,k1_sf,k2_sf,kd_sf,ke_sf,km_sf,k1_mf,k2_mf,kd_mf,ke_mf,km_mf,k1_lf,k2_lf,kd_lf,ke_lf,km_lf,
rate_constants,s_respire,phyto_respire,zoo_respire,beninv_respire,ff_respire,sfish_respire,mfish_respire,lfish_respire, None
)
# cb_phytoplankton_v,cb_zoo_v,cb_beninv_v,cb_ff_v,cb_sf_v,cb_mf_v,cb_lf_v ***Removed from kabam_obj above***
templatepath = os.path.dirname(__file__) + '/../templates/'
ChkCookie = self.request.cookies.get("ubercookie")
html = uber_lib.SkinChk(ChkCookie, "Kabam Output")
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'kabam','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'kabam',
'model_attributes':'Kabam Output'})
html = html + kabam_tables.timestamp(kabam_obj,"")
html = html + kabam_tables.table_all(kabam_obj)
html = html + kabam_tables.bar_f(kabam_obj)
html = html + template.render(templatepath + 'kabam_output_jqplot.html', {})
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
rest_funcs.save_dic(html, kabam_obj.__dict__, "kabam", "single")
self.response.out.write(html)
