def setUp(self):
data_rows = []
# Generate the Run object(s)
run = Run()
run.name = 'python upload'
run.data_rows = data_rows
run.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [run]
batch.properties['PropertyName'] = 'Property Value'
self.service = MockSaveBatch()
self.expected_kwargs = {
'expected_args': [self.service.get_server_url()],
'data':
'{"assayId": 12345, "batches": [{"batchProtocolId": 0, "comment": null, "created": null, "createdBy": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"comment": null, "created": null, "createdBy": null, "dataInputs": [], "dataRows": [], "experiments": [], "filePathRoot": null, "materialInputs": [], "materialOutputs": [], "modified": null, "modifiedBy": null, "name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}',
'headers': {
'Content-type': 'application/json',
'Accept': 'text/plain'
},
'timeout': 300
}
self.args = [mock_server_context(self.service), assay_id, batch]
def setUp(self):
data_rows = []
# Generate the Run object(s)
run = Run()
run.name = "python upload"
run.data_rows = data_rows
run.properties["RunFieldName"] = "Run Field Value"
# Generate the Batch object(s)
batch = Batch()
batch.runs = [run]
batch.properties["PropertyName"] = "Property Value"
self.service = MockSaveBatch()
self.expected_kwargs = {
"expected_args": [self.service.get_server_url()],
"data":
'{"assayId": 12345, "batches": [{"batchProtocolId": null, "comment": null, "created": null, "createdBy": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}',
"headers": {
"Content-Type": "application/json"
},
"timeout": 300,
}
self.args = [mock_server_context(self.service), assay_id, batch]
from labkey.api_wrapper import APIWrapper
from labkey.experiment import Batch, Run
labkey_server = "localhost:8080"
project_name = "ModulesAssayTest" # Project folder name
context_path = "labkey"
api = APIWrapper(labkey_server, project_name, context_path, use_ssl=False)
assay_id = 3315 # provide one from your server
###################
# Save an Assay batch
###################
# Generate the Run object(s)
run_test = Run()
run_test.name = "python upload"
run_test.data_rows = [
{
# ColumnName: Value
"SampleId": "Monkey 1",
"TimePoint": "2008/11/02 11:22:33",
"DoubleData": 4.5,
"HiddenData": "another data point",
},
{
"SampleId": "Monkey 2",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 3.1,
"HiddenData": "fozzy bear",
},
from labkey.utils import create_server_context
from labkey.experiment import Batch, Run, load_batch, save_batch
labkey_server = 'localhost:8080'
project_name = 'ModulesAssayTest' # Project folder name
context_path = 'labkey'
server_context = create_server_context(labkey_server, project_name, context_path, use_ssl=False)
assay_id = 3315 # provide one from your server
###################
# Save an Assay batch
###################
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = [{
# ColumnName: Value
'SampleId': 'Monkey 1',
'TimePoint': '2008/11/02 11:22:33',
'DoubleData': 4.5,
'HiddenData': 'another data point'
}, {
'SampleId': 'Monkey 2',
'TimePoint': '2008/11/02 14:00:01',
'DoubleData': 3.1,
'HiddenData': 'fozzy bear'
}, {
'SampleId': 'Monkey 3',
'TimePoint': '2008/11/02 14:00:01',
