def from_hdf_file(cls, cine_base_path, h5_fname):
''' Sets up object to process data based on MD in an hdf file.
'''
self = cls()
tmp_file = h5py.File('/'.join(h5_fname), 'r')
keys_lst = list(tmp_file.attrs.keys())
lc_req_args = ['tck0', 'tck1', 'tck2']
h5_req_args = ['cine_path', 'cine_fname']
cls._verify_params(keys_lst, extra_req=(lc_req_args + h5_req_args))
self.params = dict(tmp_file.attrs)
for k in lc_req_args:
del self.params[k]
self.cine_fname = FilePath(cine_base_path,
self.params.pop('cine_path'),
self.params.pop('cine_fname'))
self.cine_ = cine.Cine('/'.join(self.cine_fname))
if 'bck_img' in list(tmp_file.keys()):
self.bck_img = tmp_file['bck_img'][:]
else:
self.bck_img = infra.gen_bck_img('/'.join(self.cine_fname))
seed_curve = infra.SplineCurve.from_hdf(tmp_file)
tmp_file.close()
return self, seed_curve
def from_args(cls, cine_fname, h5_fname=None, *args, **kwargs):
self = cls()
'''Sets up the object based on arguments
'''
cls._verify_params(kwargs)
self.params = kwargs
try:
self.bck_img = self.params.pop('bck_img')
except KeyError:
self.bck_img = None
self.cine_fname = cine_fname
self.cine_ = cine.Cine('/'.join(self.cine_fname))
if self.bck_img is None:
# not passed in, try the data base
if self.db is not None:
self.bck_img = self.db.get_background_img(self.cine_.hash)
# if that fails too, run it
if self.bck_img is None:
self.bck_img = infra.gen_bck_img('/'.join(self.cine_fname))
# if we have a data base, shove in the data
if self.db is not None:
self.db.store_background_img(self.cine_.hash, self.bck_img)
return self
def gen_back_img(self):
if self.cine_fname is not None:
self.bck_img = infra.gen_bck_img(self.cine_fname.format)
