def test_point_source(self):
pointSource = PointSource(point_source_type_list=['SOURCE_POSITION'],
fixed_magnification_list=[True])
kwargs_ps = [{'source_amp': 1000, 'ra_source': 0.1, 'dec_source': 0.1}]
lensModel = LensModel(lens_model_list=['SIS'])
kwargs_lens = [{'theta_E': 1, 'center_x': 0, 'center_y': 0}]
numPix = 64
deltaPix = 0.13
kwargs_data = sim_util.data_configure_simple(numPix,
deltaPix,
exposure_time=1,
sigma_bkg=1)
data_class = Data(kwargs_data)
psf_type = "GAUSSIAN"
fwhm = 0.9
kwargs_psf = {'psf_type': psf_type, 'fwhm': fwhm}
psf_class = PSF(kwargs_psf)
imageModel = ImageModel(data_class=data_class,
psf_class=psf_class,
lens_model_class=lensModel,
point_source_class=pointSource)
image = imageModel.image(kwargs_lens=kwargs_lens, kwargs_ps=kwargs_ps)
assert np.sum(image) > 0
def create_image_model(kwargs_data, kwargs_psf, kwargs_numerics, kwargs_model):
"""
:param kwargs_data:
:param kwargs_psf:
:param kwargs_options:
:return:
"""
data_class = Data(kwargs_data)
psf_class = PSF(kwargs_psf)
lens_model_class = LensModel(
lens_model_list=kwargs_model.get('lens_model_list', []),
z_source=kwargs_model.get('z_source', None),
redshift_list=kwargs_model.get('redshift_list', None),
multi_plane=kwargs_model.get('multi_plane', False))
source_model_class = LightModel(
light_model_list=kwargs_model.get('source_light_model_list', []))
lens_light_model_class = LightModel(
light_model_list=kwargs_model.get('lens_light_model_list', []))
point_source_class = PointSource(
point_source_type_list=kwargs_model.get('point_source_model_list', []),
lensModel=lens_model_class,
fixed_magnification_list=kwargs_model.get('fixed_magnification_list',
None),
additional_images_list=kwargs_model.get('additional_images_list',
None),
min_distance=kwargs_model.get('min_distance', 0.01),
search_window=kwargs_model.get('search_window', 5),
precision_limit=kwargs_model.get('precision_limit', 10**(-10)),
num_iter_max=kwargs_model.get('num_iter_max', 100))
imageModel = ImageModel(data_class, psf_class, lens_model_class,
source_model_class, lens_light_model_class,
point_source_class, kwargs_numerics)
return imageModel
def setup(self):
self.numPix = 10
kwargs_data = {'image_data': np.zeros((self.numPix, self.numPix))}
self.Data = Data(kwargs_data)
kwargs_psf = {'psf_type': 'GAUSSIAN', 'fwhm': 1}
self.PSF = PSF(kwargs_psf)
kwargs_numerics = {'subgrid_res': 2, 'psf_subgrid': True}
self.ImageNumerics = ImageNumerics(self.Data, self.PSF, **kwargs_numerics)
def __init__(self, kwargs_data, kwargs_psf, kwargs_numerics, kwargs_model, kwargs_lens, kwargs_source,
kwargs_lens_light, kwargs_ps, arrow_size=0.02, cmap_string="gist_heat"):
"""
:param kwargs_options:
:param kwargs_data:
:param arrow_size:
:param cmap_string:
"""
self._kwargs_data = kwargs_data
if isinstance(cmap_string, str) or isinstance(cmap_string, unicode):
cmap = plt.get_cmap(cmap_string)
else:
cmap = cmap_string
cmap.set_bad(color='k', alpha=1.)
cmap.set_under('k')
self._cmap = cmap
self._arrow_size = arrow_size
data = Data(kwargs_data)
self._coords = data._coords
nx, ny = np.shape(kwargs_data['image_data'])
Mpix2coord = kwargs_data['transform_pix2angle']
self._Mpix2coord = Mpix2coord
self._deltaPix = self._coords.pixel_size
self._frame_size = self._deltaPix * nx
x_grid, y_grid = data.coordinates
self._x_grid = util.image2array(x_grid)
self._y_grid = util.image2array(y_grid)
self._imageModel = class_creator.create_image_model(kwargs_data, kwargs_psf, kwargs_numerics, kwargs_model)
self._analysis = LensAnalysis(kwargs_model)
self._lensModel = LensModel(lens_model_list=kwargs_model.get('lens_model_list', []),
z_source=kwargs_model.get('z_source', None),
redshift_list=kwargs_model.get('redshift_list', None),
multi_plane=kwargs_model.get('multi_plane', False))
self._lensModelExt = LensModelExtensions(self._lensModel)
model, error_map, cov_param, param = self._imageModel.image_linear_solve(kwargs_lens, kwargs_source,
kwargs_lens_light, kwargs_ps, inv_bool=True)
self._kwargs_lens = kwargs_lens
self._kwargs_source = kwargs_source
self._kwargs_lens_light = kwargs_lens_light
self._kwargs_else = kwargs_ps
self._model = model
self._data = kwargs_data['image_data']
self._cov_param = cov_param
self._norm_residuals = self._imageModel.reduced_residuals(model, error_map=error_map)
self._reduced_x2 = self._imageModel.reduced_chi2(model, error_map=error_map)
log_model = np.log10(model)
log_model[np.isnan(log_model)] = -5
self._v_min_default = max(np.min(log_model), -5)
self._v_max_default = min(np.max(log_model), 10)
print("reduced chi^2 = ", self._reduced_x2)
def create_image_model(kwargs_data,
kwargs_psf,
kwargs_numerics,
lens_model_list=[],
z_lens=None,
z_source=None,
lens_redshift_list=None,
multi_plane=False,
source_light_model_list=[],
lens_light_model_list=[],
point_source_model_list=[],
fixed_magnification_list=None,
additional_images_list=None,
min_distance=0.01,
search_window=5,
precision_limit=10**(-10),
num_iter_max=100,
multi_band_type=None,
source_deflection_scaling_list=None,
source_redshift_list=None,
cosmo=None):
"""
:param kwargs_data:
:param kwargs_psf:
:param kwargs_options:
:return:
"""
data_class = Data(kwargs_data)
psf_class = PSF(kwargs_psf)
lens_model_class = LensModel(lens_model_list=lens_model_list,
z_lens=z_lens,
z_source=z_source,
lens_redshift_list=lens_redshift_list,
multi_plane=multi_plane,
cosmo=cosmo)
source_model_class = LightModel(
light_model_list=source_light_model_list,
deflection_scaling_list=source_deflection_scaling_list,
source_redshift_list=source_redshift_list)
lens_light_model_class = LightModel(light_model_list=lens_light_model_list)
point_source_class = PointSource(
point_source_type_list=point_source_model_list,
lensModel=lens_model_class,
fixed_magnification_list=fixed_magnification_list,
additional_images_list=additional_images_list,
min_distance=min_distance,
search_window=search_window,
precision_limit=precision_limit,
num_iter_max=num_iter_max)
imageModel = ImageModel(data_class, psf_class, lens_model_class,
source_model_class, lens_light_model_class,
point_source_class, kwargs_numerics)
return imageModel
def setup(self):
self.SimAPI = Simulation()
# data specifics
sigma_bkg = .05 # background noise per pixel
exp_time = 100 # exposure time (arbitrary units, flux per pixel is in units #photons/exp_time unit)
numPix = 100 # cutout pixel size
deltaPix = 0.05 # pixel size in arcsec (area per pixel = deltaPix**2)
fwhm = 0.5 # full width half max of PSF
# PSF specification
kwargs_data = self.SimAPI.data_configure(numPix, deltaPix, exp_time, sigma_bkg)
data_class = Data(kwargs_data)
kwargs_psf = self.SimAPI.psf_configure(psf_type='GAUSSIAN', fwhm=fwhm, kernelsize=31, deltaPix=deltaPix, truncate=3,
kernel=None)
psf_class = PSF(kwargs_psf)
psf_class._psf_error_map = np.zeros_like(psf_class.kernel_point_source)
# 'EXERNAL_SHEAR': external shear
kwargs_shear = {'e1': 0.01, 'e2': 0.01} # gamma_ext: shear strength, psi_ext: shear angel (in radian)
phi, q = 0.2, 0.8
e1, e2 = param_util.phi_q2_ellipticity(phi, q)
kwargs_spemd = {'theta_E': 1., 'gamma': 1.8, 'center_x': 0, 'center_y': 0, 'e1': e1, 'e2': e2}
lens_model_list = ['SPEP', 'SHEAR']
self.kwargs_lens = [kwargs_spemd, kwargs_shear]
lens_model_class = LensModel(lens_model_list=lens_model_list)
# list of light profiles (for lens and source)
# 'SERSIC': spherical Sersic profile
kwargs_sersic = {'amp': 1., 'R_sersic': 0.1, 'n_sersic': 2, 'center_x': 0, 'center_y': 0}
# 'SERSIC_ELLIPSE': elliptical Sersic profile
phi, q = 0.2, 0.9
e1, e2 = param_util.phi_q2_ellipticity(phi, q)
kwargs_sersic_ellipse = {'amp': 1., 'R_sersic': .6, 'n_sersic': 7, 'center_x': 0, 'center_y': 0,
'e1': e1, 'e2': e2}
lens_light_model_list = ['SERSIC']
self.kwargs_lens_light = [kwargs_sersic]
lens_light_model_class = LightModel(light_model_list=lens_light_model_list)
source_model_list = ['SERSIC_ELLIPSE']
self.kwargs_source = [kwargs_sersic_ellipse]
source_model_class = LightModel(light_model_list=source_model_list)
self.kwargs_ps = [{'ra_source': 0.01, 'dec_source': 0.0,
'source_amp': 1.}] # quasar point source position in the source plane and intrinsic brightness
point_source_class = PointSource(point_source_type_list=['SOURCE_POSITION'], fixed_magnification_list=[True])
kwargs_numerics = {'subgrid_res': 2, 'psf_subgrid': True}
imageModel = ImageModel(data_class, psf_class, lens_model_class, source_model_class, lens_light_model_class, point_source_class, kwargs_numerics=kwargs_numerics)
image_sim = self.SimAPI.simulate(imageModel, self.kwargs_lens, self.kwargs_source,
self.kwargs_lens_light, self.kwargs_ps)
data_class.update_data(image_sim)
self.imageModel = ImageModel(data_class, psf_class, lens_model_class, source_model_class, lens_light_model_class, point_source_class, kwargs_numerics=kwargs_numerics)
self.solver = LensEquationSolver(lensModel=self.imageModel.LensModel)
def lens_model_plot(ax, lensModel, kwargs_lens, numPix=500, deltaPix=0.01, sourcePos_x=0, sourcePos_y=0, point_source=False, with_caustics=False):
"""
plots a lens model (convergence) and the critical curves and caustics
:param ax:
:param kwargs_lens:
:param numPix:
:param deltaPix:
:return:
"""
from lenstronomy.SimulationAPI.simulations import Simulation
simAPI = Simulation()
kwargs_data = simAPI.data_configure(numPix, deltaPix)
data = Data(kwargs_data)
_frame_size = numPix * deltaPix
_coords = data._coords
x_grid, y_grid = data.coordinates
lensModelExt = LensModelExtensions(lensModel)
#ra_crit_list, dec_crit_list, ra_caustic_list, dec_caustic_list = lensModelExt.critical_curve_caustics(
# kwargs_lens, compute_window=_frame_size, grid_scale=deltaPix/2.)
x_grid1d = util.image2array(x_grid)
y_grid1d = util.image2array(y_grid)
kappa_result = lensModel.kappa(x_grid1d, y_grid1d, kwargs_lens)
kappa_result = util.array2image(kappa_result)
im = ax.matshow(np.log10(kappa_result), origin='lower',
extent=[0, _frame_size, 0, _frame_size], cmap='Greys', vmin=-1, vmax=1) #, cmap=self._cmap, vmin=v_min, vmax=v_max)
if with_caustics is True:
ra_crit_list, dec_crit_list = lensModelExt.critical_curve_tiling(kwargs_lens, compute_window=_frame_size,
start_scale=deltaPix, max_order=10)
ra_caustic_list, dec_caustic_list = lensModel.ray_shooting(ra_crit_list, dec_crit_list, kwargs_lens)
plot_line_set(ax, _coords, ra_caustic_list, dec_caustic_list, color='g')
plot_line_set(ax, _coords, ra_crit_list, dec_crit_list, color='r')
if point_source:
from lenstronomy.LensModel.Solver.lens_equation_solver import LensEquationSolver
solver = LensEquationSolver(lensModel)
theta_x, theta_y = solver.image_position_from_source(sourcePos_x, sourcePos_y, kwargs_lens)
mag_images = lensModel.magnification(theta_x, theta_y, kwargs_lens)
x_image, y_image = _coords.map_coord2pix(theta_x, theta_y)
abc_list = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K']
for i in range(len(x_image)):
x_ = (x_image[i] + 0.5) * deltaPix
y_ = (y_image[i] + 0.5) * deltaPix
ax.plot(x_, y_, 'dk', markersize=4*(1 + np.log(np.abs(mag_images[i]))), alpha=0.5)
ax.text(x_, y_, abc_list[i], fontsize=20, color='k')
x_source, y_source = _coords.map_coord2pix(sourcePos_x, sourcePos_y)
ax.plot((x_source + 0.5) * deltaPix, (y_source + 0.5) * deltaPix, '*k', markersize=10)
ax.get_xaxis().set_visible(False)
ax.get_yaxis().set_visible(False)
ax.autoscale(False)
#image_position_plot(ax, _coords, self._kwargs_else)
#source_position_plot(ax, self._coords, self._kwargs_source)
return ax
def data_class(self):
"""
creates a Data() instance of lenstronomy based on knowledge of the observation
:return: instance of Data() class
"""
x_grid, y_grid, ra_at_xy_0, dec_at_xy_0, x_at_radec_0, y_at_radec_0, Mpix2coord, Mcoord2pix = util.make_grid_with_coordtransform(
numPix=self.numpix, deltapix=self.pixel_scale, subgrid_res=1, left_lower=False, inverse=False)
kwargs_data = {'numPix': self.numpix, 'ra_at_xy_0': ra_at_xy_0, 'dec_at_xy_0': dec_at_xy_0,
'transform_pix2angle': Mpix2coord,
'background_rms': self.background_noise,
'exp_time': self.scaled_exposure_time}
data_class = Data(kwargs_data)
return data_class
def test_data_configure_simple(self):
# data specifics
sigma_bkg = 1. # background noise per pixel
exp_time = 10 # exposure time (arbitrary units, flux per pixel is in units #photons/exp_time unit)
numPix = 100 # cutout pixel size
deltaPix = 0.05 # pixel size in arcsec (area per pixel = deltaPix**2)
fwhm = 0.5 # full width half max of PSF
# PSF specification
kwargs_data = sim_util.data_configure_simple(numPix, deltaPix,
exp_time, sigma_bkg)
data_class = Data(kwargs_data)
assert data_class.deltaPix == deltaPix
def __init__(self,
multi_band_list,
lens_model_class=None,
source_model_list=None,
lens_light_model_list=None,
point_source_class=None):
imageModel_list = []
self._index_source_list = []
self._index_lens_light_list = []
for i in range(len(multi_band_list)):
kwargs_data = multi_band_list[i][0]
kwargs_psf = multi_band_list[i][1]
kwargs_numerics = multi_band_list[i][2]
data_i = Data(kwargs_data=kwargs_data)
psf_i = PSF(kwargs_psf=kwargs_psf)
index_source_list = multi_band_list[i][3].get(
'index_source_light_model',
[k for k in range(len(source_model_list))])
self._index_source_list.append(index_source_list)
source_model_list_sub = [
source_model_list[k] for k in index_source_list
]
source_model_class = LightModel(
light_model_list=source_model_list_sub)
index_lens_light_list = multi_band_list[i][3].get(
'index_lens_light_model',
[k for k in range(len(source_model_list))])
self._index_lens_light_list.append(index_lens_light_list)
lens_light_model_list_sub = [
lens_light_model_list[k] for k in index_lens_light_list
]
lens_light_model_class = LightModel(
light_model_list=lens_light_model_list_sub)
imageModel = ImageModel(data_i,
psf_i,
lens_model_class,
source_model_class,
lens_light_model_class,
point_source_class,
kwargs_numerics=kwargs_numerics)
imageModel_list.append(imageModel)
super(MultiBandMultiModel, self).__init__(imageModel_list)
def test_point_source_rendering(self):
# initialize data
from lenstronomy.SimulationAPI.simulations import Simulation
SimAPI = Simulation()
numPix = 100
deltaPix = 0.05
kwargs_data = SimAPI.data_configure(numPix, deltaPix, exposure_time=1, sigma_bkg=1)
data_class = Data(kwargs_data)
kernel = np.zeros((5, 5))
kernel[2, 2] = 1
kwargs_psf = {'kernel_point_source': kernel, 'kernel_pixel': kernel, 'psf_type': 'PIXEL'}
psf_class = PSF(kwargs_psf)
lens_model_class = LensModel(['SPEP'])
source_model_class = LightModel([])
lens_light_model_class = LightModel([])
kwargs_numerics = {'subgrid_res': 2, 'point_source_subgrid': 1}
point_source_class = PointSource(point_source_type_list=['LENSED_POSITION'], fixed_magnification_list=[False])
makeImage = ImageModel(data_class, psf_class, lens_model_class, source_model_class, lens_light_model_class, point_source_class, kwargs_numerics=kwargs_numerics)
# chose point source positions
x_pix = np.array([10, 5, 10, 90])
y_pix = np.array([40, 50, 60, 50])
ra_pos, dec_pos = makeImage.Data.map_pix2coord(x_pix, y_pix)
e1, e2 = param_util.phi_q2_ellipticity(0, 0.8)
kwargs_lens_init = [{'theta_E': 1, 'gamma': 2, 'e1': e1, 'e2': e2, 'center_x': 0, 'center_y': 0}]
kwargs_else = [{'ra_image': ra_pos, 'dec_image': dec_pos, 'point_amp': np.ones_like(ra_pos)}]
model = makeImage.image(kwargs_lens_init, kwargs_source={}, kwargs_lens_light={}, kwargs_ps=kwargs_else)
image = makeImage.ImageNumerics.array2image(model)
for i in range(len(x_pix)):
npt.assert_almost_equal(image[y_pix[i], x_pix[i]], 1, decimal=2)
x_pix = np.array([10.5, 5.5, 10.5, 90.5])
y_pix = np.array([40, 50, 60, 50])
ra_pos, dec_pos = makeImage.Data.map_pix2coord(x_pix, y_pix)
phi, q = 0., 0.8
e1, e2 = param_util.phi_q2_ellipticity(phi, q)
kwargs_lens_init = [{'theta_E': 1, 'gamma': 2, 'e1': e1, 'e2': e2, 'center_x': 0, 'center_y': 0}]
kwargs_else = [{'ra_image': ra_pos, 'dec_image': dec_pos, 'point_amp': np.ones_like(ra_pos)}]
model = makeImage.image(kwargs_lens_init, kwargs_source={}, kwargs_lens_light={}, kwargs_ps=kwargs_else)
image = makeImage.ImageNumerics.array2image(model)
for i in range(len(x_pix)):
print(int(y_pix[i]), int(x_pix[i]+0.5))
npt.assert_almost_equal(image[int(y_pix[i]), int(x_pix[i])], 0.5, decimal=1)
npt.assert_almost_equal(image[int(y_pix[i]), int(x_pix[i]+0.5)], 0.5, decimal=1)
def test_force_positive_source_surface_brightness(self):
kwargs_likelihood = {
'force_positive_source_surface_brightness': True,
'numPix_source': 10,
'deltaPix_source': 0.1
}
kwargs_model = {'source_light_model_list': ['SERSIC']}
kwargs_constraints = {}
param_class = Param(kwargs_model, **kwargs_constraints)
kwargs_data = sim_util.data_configure_simple(numPix=10,
deltaPix=0.1,
exposure_time=1,
sigma_bkg=0.1)
data_class = Data(kwargs_data)
kwargs_psf = {'psf_type': 'NONE'}
psf_class = PSF(kwargs_psf)
kwargs_sersic = {
'amp': -1.,
'R_sersic': 0.1,
'n_sersic': 2,
'center_x': 0,
'center_y': 0
}
source_model_list = ['SERSIC']
kwargs_source = [kwargs_sersic]
source_model_class = LightModel(light_model_list=source_model_list)
imageModel = ImageModel(data_class,
psf_class,
lens_model_class=None,
source_model_class=source_model_class)
image_sim = sim_util.simulate_simple(imageModel, [], kwargs_source)
data_class.update_data(image_sim)
likelihood = LikelihoodModule(imSim_class=imageModel,
param_class=param_class,
**kwargs_likelihood)
logL, _ = likelihood.logL(args=param_class.kwargs2args(
kwargs_source=kwargs_source))
assert logL <= -10**10
def creat_image_model(kwargs_data, kwargs_psf, kwargs_numerics, kwargs_model):
"""
:param kwargs_data:
:param kwargs_psf:
:param kwargs_options:
:return:
"""
data_class = Data(kwargs_data)
psf_class = PSF(kwargs_psf)
if 'lens_model_list' in kwargs_model:
lens_model_class = LensModel(
lens_model_list=kwargs_model.get('lens_model_list', None),
z_source=kwargs_model.get('z_source', None),
redshift_list=kwargs_model.get('redshift_list', None),
multi_plane=kwargs_model.get('multi_plane', False))
else:
lens_model_class = None
if 'source_light_model_list' in kwargs_model:
source_model_class = LightModel(light_model_list=kwargs_model.get(
'source_light_model_list', ['NONE']))
else:
source_model_class = None
if 'lens_light_model_list' in kwargs_model:
lens_light_model_class = LightModel(light_model_list=kwargs_model.get(
'lens_light_model_list', ['NONE']))
else:
lens_light_model_class = None
if 'point_source_model_list' in kwargs_model:
point_source_class = PointSource(
point_source_type_list=kwargs_model.get('point_source_model_list',
['NONE']),
fixed_magnification_list=kwargs_model.get(
'fixed_magnification_list', None),
additional_images_list=kwargs_model.get('additional_images_list',
None))
else:
point_source_class = None
imageModel = ImageModel(data_class, psf_class, lens_model_class,
source_model_class, lens_light_model_class,
point_source_class, kwargs_numerics)
return imageModel
def __init__(self, multi_band_list, lens_model_class, source_model_class,
lens_light_model_class, point_source_class):
self._num_bands = len(multi_band_list)
self.lensModel = lens_model_class
self.pointSource = point_source_class
self._imageModel_list = []
for i in range(self._num_bands):
kwargs_data = multi_band_list[i][0]
kwargs_psf = multi_band_list[i][1]
kwargs_numerics = multi_band_list[i][2]
data_i = Data(kwargs_data=kwargs_data)
psf_i = PSF(kwargs_psf=kwargs_psf)
self._imageModel_list.append(
ImageModel(data_i,
psf_i,
lens_model_class,
source_model_class,
lens_light_model_class,
point_source_class,
kwargs_numerics=kwargs_numerics))
def __init__(self,
multi_band_list,
lens_model_class=None,
source_model_class=None,
lens_light_model_class=None,
point_source_class=None):
imageModel_list = []
for i in range(len(multi_band_list)):
kwargs_data = multi_band_list[i][0]
kwargs_psf = multi_band_list[i][1]
kwargs_numerics = multi_band_list[i][2]
data_i = Data(kwargs_data=kwargs_data)
psf_i = PSF(kwargs_psf=kwargs_psf)
imageModel = ImageModel(data_i,
psf_i,
lens_model_class,
source_model_class,
lens_light_model_class,
point_source_class,
kwargs_numerics=kwargs_numerics)
imageModel_list.append(imageModel)
super(MultiBand, self).__init__(imageModel_list)
deltaPix = 0.05/4 # pixel size in arcsec (area per pixel = deltaPix**2)
psf = pyfits.open('psf_{0}_sub4.fits'.format(filt))
psf_data = psf[0].data
cut =25
# psf_data = psf_data[1+cut:-cut,1+cut:-cut]+ 0 #shave PSF to singular size, as max in the middle
plt.imshow(psf_data, origin='lower',cmap='gist_heat', norm=LogNorm())
plt.colorbar()
plt.close()
kwargs_psf_high_res = {'psf_type': 'PIXEL', 'kernel_point_source': psf_data, 'pixel_size': deltaPix}
psf_class = PSF(**kwargs_psf_high_res)
zp= 25.9463 #Assuming it same as F160W
kwargs_data_high_res = sim_util.data_configure_simple(numPix, deltaPix) #,inverse=True)
data_class = Data(**kwargs_data_high_res)
kwargs_numerics = {'supersampling_factor': 12, 'supersampling_convolution': False}
import sys
sys.path.insert(0,'../../share_tools/')
from gene_para import gene_para
for seed in range(702, 799):
print(seed)
para=gene_para(seed=seed,fixh0=102)
#==============================================================================
# #######lens light
#==============================================================================
from lenstronomy.LightModel.light_model import LightModel
lens_light_para=para.lens_light()
np.random.seed(seed)
def setup(self):
self.SimAPI = Simulation()
# data specifics
sigma_bkg = 0.05 # background noise per pixel
exp_time = 100 # exposure time (arbitrary units, flux per pixel is in units #photons/exp_time unit)
numPix = 10 # cutout pixel size
deltaPix = 0.1 # pixel size in arcsec (area per pixel = deltaPix**2)
fwhm = 0.5 # full width half max of PSF
# PSF specification
kwargs_data = self.SimAPI.data_configure(numPix, deltaPix, exp_time,
sigma_bkg)
data_class = Data(kwargs_data)
kwargs_psf = self.SimAPI.psf_configure(psf_type='GAUSSIAN',
fwhm=fwhm,
kernelsize=11,
deltaPix=deltaPix,
truncate=3,
kernel=None)
kwargs_psf = self.SimAPI.psf_configure(
psf_type='PIXEL',
fwhm=fwhm,
kernelsize=11,
deltaPix=deltaPix,
truncate=6,
kernel=kwargs_psf['kernel_point_source'])
psf_class = PSF(kwargs_psf)
kwargs_spemd = {
'theta_E': 1.,
'gamma': 1.8,
'center_x': 0,
'center_y': 0,
'e1': 0.1,
'e2': 0.1
}
lens_model_list = ['SPEP']
self.kwargs_lens = [kwargs_spemd]
lens_model_class = LensModel(lens_model_list=lens_model_list)
kwargs_sersic = {
'amp': 1.,
'R_sersic': 0.1,
'n_sersic': 2,
'center_x': 0,
'center_y': 0
}
# 'SERSIC_ELLIPSE': elliptical Sersic profile
kwargs_sersic_ellipse = {
'amp': 1.,
'R_sersic': .6,
'n_sersic': 3,
'center_x': 0,
'center_y': 0,
'e1': 0.1,
'e2': 0.1
}
lens_light_model_list = ['SERSIC']
self.kwargs_lens_light = [kwargs_sersic]
lens_light_model_class = LightModel(
light_model_list=lens_light_model_list)
source_model_list = ['SERSIC_ELLIPSE']
self.kwargs_source = [kwargs_sersic_ellipse]
source_model_class = LightModel(light_model_list=source_model_list)
kwargs_numerics = {'subgrid_res': 1, 'psf_subgrid': False}
imageModel = ImageModel(data_class,
psf_class,
lens_model_class,
source_model_class,
lens_light_model_class,
kwargs_numerics=kwargs_numerics)
image_sim = self.SimAPI.simulate(imageModel, self.kwargs_lens,
self.kwargs_source,
self.kwargs_lens_light)
data_class.update_data(image_sim)
self.data_class = data_class
self.psf_class = psf_class
kwargs_model = {
'lens_model_list': lens_model_list,
'source_light_model_list': source_model_list,
'lens_light_model_list': lens_light_model_list,
'fixed_magnification_list': [False],
}
self.kwargs_numerics = {'subgrid_res': 1, 'psf_subgrid': False}
num_source_model = len(source_model_list)
kwargs_constraints = {
'joint_center_lens_light': False,
'joint_center_source_light': False,
'additional_images_list': [False],
'fix_to_point_source_list': [False] * num_source_model,
'image_plane_source_list': [False] * num_source_model,
'solver': False,
}
kwargs_likelihood = {
'source_marg': True,
'point_source_likelihood': False,
'position_uncertainty': 0.004,
'check_solver': False,
'solver_tolerance': 0.001,
}
self.param_class = Param(kwargs_model, kwargs_constraints)
self.Likelihood = LikelihoodModule(imSim_class=imageModel,
param_class=self.param_class,
kwargs_likelihood=kwargs_likelihood)
self.sampler = Sampler(likelihoodModule=self.Likelihood)
def setup(self):
self.numPix = 10
kwargs_data = {'image_data': np.zeros((self.numPix, self.numPix))}
self.Data = Data(kwargs_data)
def arrival_time_surface(ax,
lensModel,
kwargs_lens,
numPix=500,
deltaPix=0.01,
sourcePos_x=0,
sourcePos_y=0,
with_caustics=False,
point_source=False,
n_levels=10):
"""
:param ax:
:param lensModel:
:param kwargs_lens:
:param numPix:
:param deltaPix:
:param sourcePos_x:
:param sourcePos_y:
:param with_caustics:
:return:
"""
kwargs_data = sim_util.data_configure_simple(numPix, deltaPix)
data = Data(kwargs_data)
_frame_size = numPix * deltaPix
_coords = data._coords
x_grid, y_grid = data.coordinates
lensModelExt = LensModelExtensions(lensModel)
#ra_crit_list, dec_crit_list, ra_caustic_list, dec_caustic_list = lensModelExt.critical_curve_caustics(
# kwargs_lens, compute_window=_frame_size, grid_scale=deltaPix/2.)
x_grid1d = util.image2array(x_grid)
y_grid1d = util.image2array(y_grid)
fermat_surface = lensModel.fermat_potential(x_grid1d, y_grid1d,
sourcePos_x, sourcePos_y,
kwargs_lens)
fermat_surface = util.array2image(fermat_surface)
vmin = np.min(fermat_surface)
vmax = np.max(fermat_surface)
levels = np.linspace(start=vmin, stop=vmax, num=n_levels)
im = ax.contourf(
x_grid,
y_grid,
fermat_surface,
origin='lower', # extent=[0, _frame_size, 0, _frame_size],
levels=levels)
#, cmap='Greys', vmin=-1, vmax=1) #, cmap=self._cmap, vmin=v_min, vmax=v_max)
if with_caustics is True:
ra_crit_list, dec_crit_list = lensModelExt.critical_curve_tiling(
kwargs_lens,
compute_window=_frame_size,
start_scale=deltaPix,
max_order=10)
ra_caustic_list, dec_caustic_list = lensModel.ray_shooting(
ra_crit_list, dec_crit_list, kwargs_lens)
plot_line_set(ax,
_coords,
ra_caustic_list,
dec_caustic_list,
shift=_frame_size / 2.,
color='g')
plot_line_set(ax,
_coords,
ra_crit_list,
dec_crit_list,
shift=_frame_size / 2.,
color='r')
if point_source is True:
from lenstronomy.LensModel.Solver.lens_equation_solver import LensEquationSolver
solver = LensEquationSolver(lensModel)
theta_x, theta_y = solver.image_position_from_source(
sourcePos_x,
sourcePos_y,
kwargs_lens,
min_distance=deltaPix,
search_window=deltaPix * numPix)
mag_images = lensModel.magnification(theta_x, theta_y, kwargs_lens)
x_image, y_image = _coords.map_coord2pix(theta_x, theta_y)
abc_list = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K']
for i in range(len(x_image)):
x_ = (x_image[i] + 0.5) * deltaPix - _frame_size / 2
y_ = (y_image[i] + 0.5) * deltaPix - _frame_size / 2
#x_ = x_image[i] * deltaPix
#y_ = y_image[i] * deltaPix
ax.plot(x_,
y_,
'dk',
markersize=4 * (1 + np.log(np.abs(mag_images[i]))),
alpha=0.5)
ax.text(x_, y_, abc_list[i], fontsize=20, color='k')
x_source, y_source = _coords.map_coord2pix(sourcePos_x, sourcePos_y)
ax.plot((x_source + 0.5) * deltaPix - _frame_size / 2,
(y_source + 0.5) * deltaPix - _frame_size / 2,
'*k',
markersize=10)
ax.get_xaxis().set_visible(False)
ax.get_yaxis().set_visible(False)
ax.autoscale(False)
return ax
masksize=40 #mask size in pixels msmin = int(pix/2) - int(masksize/2) msmax = int(pix/2) + int(masksize/2) catmask = cat[:,msmin:msmax,msmin:msmax] # data specifics sigma_bkg = .1 # background noise per pixel exp_time = 90 # exposure time (arbitrary units, flux per pixel is in units #photons/exp_time unit) numPix = pix # cutout pixel size deltaPix = 0.27 # pixel size in arcsec (area per pixel = deltaPix**2) fwhm = 0.958 # full width half max of PSF #Data kwargs_data = SimAPI.data_configure(pix, deltaPix, exp_time, sigma_bkg) data_class = Data(kwargs_data) #Mask kwargs_data_mask = SimAPI.data_configure(masksize, deltaPix, exp_time, sigma_bkg) data_class_mask = Data(kwargs_data_mask) # PSF specification kwargs_psf = SimAPI.psf_configure(psf_type='GAUSSIAN', fwhm=fwhm, kernelsize=31, deltaPix=deltaPix, truncate=6, kernel=None) psf_class = PSF(kwargs_psf) #********************************************************************************# # SOURCE DEFINITION # #********************************************************************************# source_ALL = cat[1] # CIRCULAR MASK FOR THE SOURCE, where pix is the size of the image, radius is the radius of the mask in pixels
def setup(self):
np.random.seed(42)
# data specifics
sigma_bkg = 0.05 # background noise per pixel
exp_time = 100 # exposure time (arbitrary units, flux per pixel is in units #photons/exp_time unit)
numPix = 50 # cutout pixel size
deltaPix = 0.1 # pixel size in arcsec (area per pixel = deltaPix**2)
fwhm = 0.5 # full width half max of PSF
# PSF specification
kwargs_data = sim_util.data_configure_simple(numPix, deltaPix,
exp_time, sigma_bkg)
data_class = Data(kwargs_data)
kwargs_psf = sim_util.psf_configure_simple(psf_type='GAUSSIAN',
fwhm=fwhm,
kernelsize=11,
deltaPix=deltaPix,
truncate=3,
kernel=None)
psf_class = PSF(kwargs_psf)
kwargs_spemd = {
'theta_E': 1.,
'gamma': 1.95,
'center_x': 0,
'center_y': 0,
'e1': 0.1,
'e2': 0.1
}
lens_model_list = ['SPEP']
self.kwargs_lens = [kwargs_spemd]
lens_model_class = LensModel(lens_model_list=lens_model_list)
kwargs_sersic = {
'amp': 1 / 0.05**2.,
'R_sersic': 0.1,
'n_sersic': 2,
'center_x': 0,
'center_y': 0
}
# 'SERSIC_ELLIPSE': elliptical Sersic profile
kwargs_sersic_ellipse = {
'amp': 1.,
'R_sersic': .6,
'n_sersic': 3,
'center_x': 0,
'center_y': 0,
'e1': 0.1,
'e2': 0.1
}
lens_light_model_list = ['SERSIC']
self.kwargs_lens_light = [kwargs_sersic]
lens_light_model_class = LightModel(
light_model_list=lens_light_model_list)
source_model_list = ['SERSIC_ELLIPSE']
self.kwargs_source = [kwargs_sersic_ellipse]
source_model_class = LightModel(light_model_list=source_model_list)
self.kwargs_ps = [
{
'ra_source': 0.55,
'dec_source': 0.02,
'source_amp': 1.
}
] # quasar point source position in the source plane and intrinsic brightness
self.kwargs_cosmo = {'D_dt': 1000}
point_source_list = ['SOURCE_POSITION']
point_source_class = PointSource(
point_source_type_list=point_source_list,
fixed_magnification_list=[True])
kwargs_numerics = {'subgrid_res': 1, 'psf_subgrid': False}
imageModel = ImageModel(data_class,
psf_class,
lens_model_class,
source_model_class,
lens_light_model_class,
point_source_class,
kwargs_numerics=kwargs_numerics)
image_sim = sim_util.simulate_simple(imageModel, self.kwargs_lens,
self.kwargs_source,
self.kwargs_lens_light,
self.kwargs_ps)
data_class.update_data(image_sim)
self.data_class = data_class
self.psf_class = psf_class
self.kwargs_model = {
'lens_model_list': lens_model_list,
'source_light_model_list': source_model_list,
'lens_light_model_list': lens_light_model_list,
'point_source_model_list': point_source_list,
}
self.kwargs_numerics = {'subgrid_res': 1, 'psf_subgrid': False}
kwargs_constraints = {
'num_point_source_list': [4],
'solver_type':
'NONE', # 'PROFILE', 'PROFILE_SHEAR', 'ELLIPSE', 'CENTER'
'cosmo_type': 'D_dt'
}
kwargs_likelihood = {
'force_no_add_image': True,
'source_marg': True,
'point_source_likelihood': True,
'position_uncertainty': 0.004,
'check_solver': True,
'solver_tolerance': 0.001,
'check_positive_flux': True,
}
self.param_class = Param(self.kwargs_model, **kwargs_constraints)
self.imageModel = ImageModel(data_class,
psf_class,
lens_model_class,
source_model_class,
lens_light_model_class,
point_source_class,
kwargs_numerics=kwargs_numerics)
self.Likelihood = LikelihoodModule(imSim_class=self.imageModel,
param_class=self.param_class,
**kwargs_likelihood)
param = Param(kwargs_model,
kwargs_fixed_source=source_params_2,
kwargs_fixed_ps=ps_param_2,
**kwargs_constraints)
mcmc_new_list = []
from lenstronomy.ImSim.image_model import ImageModel
import lenstronomy.Util.simulation_util as sim_util
from lenstronomy.Data.imaging_data import Data
kwargs_data = sim_util.data_configure_simple(81,
0.04,
1000,
0.001,
inverse=True)
data_class = Data(kwargs_data)
data_class.update_data(agn_image)
kernel_size = len(psf)
kernel = psf
kwargs_psf = sim_util.psf_configure_simple(psf_type='PIXEL',
fwhm=0.2,
kernelsize=kernel_size,
deltaPix=0.04,
kernel=kernel)
from lenstronomy.Data.psf import PSF
psf_class = PSF(kwargs_psf)
from lenstronomy.LightModel.light_model import LightModel
light_model_list = ['SERSIC_ELLIPSE'] * len(source_params_2)
lightModel = LightModel(light_model_list=light_model_list)
def setup(self):
self.SimAPI = Simulation()
# data specifics
sigma_bkg = 0.05 # background noise per pixel
exp_time = 100 # exposure time (arbitrary units, flux per pixel is in units #photons/exp_time unit)
numPix = 50 # cutout pixel size
deltaPix = 0.1 # pixel size in arcsec (area per pixel = deltaPix**2)
fwhm = 0.5 # full width half max of PSF
# PSF specification
self.kwargs_data = self.SimAPI.data_configure(numPix, deltaPix, exp_time, sigma_bkg)
data_class = Data(self.kwargs_data)
kwargs_psf = self.SimAPI.psf_configure(psf_type='GAUSSIAN', fwhm=fwhm, kernelsize=11, deltaPix=deltaPix,
truncate=3,
kernel=None)
self.kwargs_psf = self.SimAPI.psf_configure(psf_type='PIXEL', fwhm=fwhm, kernelsize=11, deltaPix=deltaPix,
truncate=6,
kernel=kwargs_psf['kernel_point_source'])
psf_class = PSF(self.kwargs_psf)
# 'EXERNAL_SHEAR': external shear
kwargs_shear = {'e1': 0.01, 'e2': 0.01} # gamma_ext: shear strength, psi_ext: shear angel (in radian)
kwargs_spemd = {'theta_E': 1., 'gamma': 1.8, 'center_x': 0, 'center_y': 0, 'e1': 0.1, 'e2': 0.1}
lens_model_list = ['SPEP', 'SHEAR']
self.kwargs_lens = [kwargs_spemd, kwargs_shear]
lens_model_class = LensModel(lens_model_list=lens_model_list)
kwargs_sersic = {'amp': 1., 'R_sersic': 0.1, 'n_sersic': 2, 'center_x': 0, 'center_y': 0}
# 'SERSIC_ELLIPSE': elliptical Sersic profile
kwargs_sersic_ellipse = {'amp': 1., 'R_sersic': .6, 'n_sersic': 3, 'center_x': 0, 'center_y': 0,
'e1': 0.1, 'e2': 0.1}
lens_light_model_list = ['SERSIC']
self.kwargs_lens_light = [kwargs_sersic]
lens_light_model_class = LightModel(light_model_list=lens_light_model_list)
source_model_list = ['SERSIC_ELLIPSE']
self.kwargs_source = [kwargs_sersic_ellipse]
source_model_class = LightModel(light_model_list=source_model_list)
self.kwargs_ps = [{'ra_source': 0.0, 'dec_source': 0.0,
'source_amp': 1.}] # quasar point source position in the source plane and intrinsic brightness
point_source_list = ['SOURCE_POSITION']
point_source_class = PointSource(point_source_type_list=point_source_list, fixed_magnification_list=[True])
kwargs_numerics = {'subgrid_res': 1, 'psf_subgrid': False}
imageModel = ImageModel(data_class, psf_class, lens_model_class, source_model_class,
lens_light_model_class,
point_source_class, kwargs_numerics=kwargs_numerics)
image_sim = self.SimAPI.simulate(imageModel, self.kwargs_lens, self.kwargs_source,
self.kwargs_lens_light, self.kwargs_ps)
data_class.update_data(image_sim)
self.data_class = data_class
self.psf_class = psf_class
self.kwargs_data['image_data'] = image_sim
self.kwargs_model = {'lens_model_list': lens_model_list,
'source_light_model_list': source_model_list,
'lens_light_model_list': lens_light_model_list,
'point_source_model_list': point_source_list,
'fixed_magnification_list': [False],
}
self.kwargs_numerics = {
'subgrid_res': 1,
'psf_subgrid': False}
num_source_model = len(source_model_list)
self.kwargs_constraints = {'joint_center_lens_light': False,
'joint_center_source_light': False,
'num_point_source_list': [4],
'additional_images_list': [False],
'fix_to_point_source_list': [False] * num_source_model,
'image_plane_source_list': [False] * num_source_model,
'solver': False,
'solver_type': 'PROFILE_SHEAR', # 'PROFILE', 'PROFILE_SHEAR', 'ELLIPSE', 'CENTER'
}
self.kwargs_likelihood = {'force_no_add_image': True,
'source_marg': True,
'point_source_likelihood': False,
'position_uncertainty': 0.004,
'check_solver': False,
'solver_tolerance': 0.001,
'check_positive_flux': True,
}
def setup(self):
# data specifics
sigma_bkg = 0.01 # background noise per pixel
exp_time = 100 # exposure time (arbitrary units, flux per pixel is in units #photons/exp_time unit)
numPix = 100 # cutout pixel size
deltaPix = 0.05 # pixel size in arcsec (area per pixel = deltaPix**2)
fwhm = 0.3 # full width half max of PSF
# PSF specification
kwargs_data = sim_util.data_configure_simple(numPix, deltaPix, exp_time, sigma_bkg)
data_class = Data(kwargs_data)
sigma = util.fwhm2sigma(fwhm)
x_grid, y_grid = util.make_grid(numPix=31, deltapix=0.05)
from lenstronomy.LightModel.Profiles.gaussian import Gaussian
gaussian = Gaussian()
kernel_point_source = gaussian.function(x_grid, y_grid, amp=1., sigma_x=sigma, sigma_y=sigma,
center_x=0, center_y=0)
kernel_point_source /= np.sum(kernel_point_source)
kernel_point_source = util.array2image(kernel_point_source)
self.kwargs_psf = {'psf_type': 'PIXEL', 'kernel_point_source': kernel_point_source}
psf_class = PSF(kwargs_psf=self.kwargs_psf)
# 'EXERNAL_SHEAR': external shear
kwargs_shear = {'e1': 0.01, 'e2': 0.01} # gamma_ext: shear strength, psi_ext: shear angel (in radian)
phi, q = 0.2, 0.8
e1, e2 = param_util.phi_q2_ellipticity(phi, q)
kwargs_spemd = {'theta_E': 1., 'gamma': 1.8, 'center_x': 0, 'center_y': 0, 'e1': e1, 'e2': e2}
lens_model_list = ['SPEP', 'SHEAR']
self.kwargs_lens = [kwargs_spemd, kwargs_shear]
lens_model_class = LensModel(lens_model_list=lens_model_list)
# list of light profiles (for lens and source)
# 'SERSIC': spherical Sersic profile
kwargs_sersic = {'amp': 1., 'R_sersic': 0.1, 'n_sersic': 2, 'center_x': 0, 'center_y': 0}
# 'SERSIC_ELLIPSE': elliptical Sersic profile
phi, q = 0.2, 0.9
e1, e2 = param_util.phi_q2_ellipticity(phi, q)
kwargs_sersic_ellipse = {'amp': 1., 'R_sersic': .6, 'n_sersic': 7, 'center_x': 0, 'center_y': 0,
'e1': e1, 'e2': e2}
lens_light_model_list = ['SERSIC']
self.kwargs_lens_light = [kwargs_sersic]
lens_light_model_class = LightModel(light_model_list=lens_light_model_list)
source_model_list = ['SERSIC_ELLIPSE']
self.kwargs_source = [kwargs_sersic_ellipse]
source_model_class = LightModel(light_model_list=source_model_list)
self.kwargs_ps = [{'ra_source': 0.0, 'dec_source': 0.0,
'source_amp': 10.}] # quasar point source position in the source plane and intrinsic brightness
point_source_class = PointSource(point_source_type_list=['SOURCE_POSITION'], fixed_magnification_list=[True])
kwargs_numerics = {'subgrid_res': 3, 'psf_subgrid': True}
imageModel = ImageModel(data_class, psf_class, lens_model_class, source_model_class,
lens_light_model_class,
point_source_class, kwargs_numerics=kwargs_numerics)
image_sim = sim_util.simulate_simple(imageModel, self.kwargs_lens, self.kwargs_source,
self.kwargs_lens_light, self.kwargs_ps)
data_class.update_data(image_sim)
self.imageModel = ImageModel(data_class, psf_class, lens_model_class, source_model_class,
lens_light_model_class,
point_source_class, kwargs_numerics=kwargs_numerics)
self.psf_fitting = PsfFitting(self.imageModel)
kwargs_psfR = {
# 'psf_type': 'PIXEL',
'psf_type': 'PIXEL',
'kernel_point_source': psfR,
# 'kernel_point_source': psf_kernel,
}
#kwargs_data = sim_util.data_configure_simple(numPix, deltaPix, exp_time, background_rms)
data_classI = Data(kwargs_dataI)
psf_classI = PSF(kwargs_psfI)
data_classG = Data(kwargs_dataG)
psf_classG = PSF(kwargs_psfG)
data_classR = Data(kwargs_dataR)
psf_classR = PSF(kwargs_psfR)
# create a model with three Sersic profiles
# all the models are part of 'lens_light_model_list', meaning that their surface brightness profile are not lensed
lens_light_model_listI = ['SERSIC_ELLIPSE']
lens_light_model_listG = ['SERSIC_ELLIPSE']
lens_light_model_listR = ['SERSIC_ELLIPSE']
from lenstronomy.LightModel.light_model import LightModel
lightModelI = LightModel(lens_light_model_listI)
lightModelR = LightModel(lens_light_model_listR)
lightModelG = LightModel(lens_light_model_listG)
