chemFolderPath = os.path.join(folderName, chemFolder) if not os.path.isdir(chemFolderPath): try: os.mkdir(chemFolderPath) except: print "Impossible to create statistic directory", chemFolderPath; sys.exit(1) # CREATE ARTIFICIAL CHEMISTRY # Create foodlist foodList = range(int(2**(args.lastFood+1)-2)) # Create species List speciesList = sp.createCompleteSpeciesPopulation(args.maxDim, parameters[14]) originalSpeciesList = deepcopy(speciesList) # Crate chemist # compute population cardinality totSpecies = sp.getTotNumberOfSpeciesFromCompletePop(args.maxDim) # Compute overall conceivable number of reactions totCleavage = reactions.getNumOfCleavages(originalSpeciesList) # Compute the number of reactions according to the chemistry type adopted if args.creationMethod == 1: totCond = reactions.getNumOfCondensations(totSpecies) else: totCond = 0 totRcts = totCleavage + totCond # If the reaction probability is 0, it is set to the critical value of 1 reaction per species on average if parameters[21] == 0: prob = (1 / float(totRcts)) * args.avgCon else: prob = parameters[21] rctToCat = int(round(totSpecies * args.avgCon)) # Create chemistry
timeAnalysisVector = [] for instanceID, instance in enumerate((range(iterations))): # FOR EACH ITERATION # Flush standard output sys.stdout.flush() nCleavage = 0 nCondensa = 0 # Create the complete population of species according to the Max Length and the alphabet alphabet = ['A', 'B'] speciesList = sp.createCompleteSpeciesPopulation(maxlength, alphabet) originalSpeciesList = deepcopy(speciesList) # compute population carinality totSpecies = sp.getTotNumberOfSpeciesFromCompletePop(maxlength) # Compute overall conceivable number of reactions totCleavage = reactions.getNumOfCleavages(speciesList) if (args.creationMethod == 1) | (args.creationMethod == 4): totCond = reactions.getNumOfCondensations(totSpecies) else: totCond = 0 totRcts = totCleavage + totCond # If the reaction probability is 0, it is set to the critical value of 1 reaction per species on average prob = (1 / float(totRcts)) * averageConn if instanceID == 0: print '|- Max Length: ', maxlength, ' - AVG CON: ', averageConn, ' - Species: ', \ totSpecies, '- Reactions: ', totRcts, ' <- Condensations: ', totCond, ' - Cleavage: ', totCleavage # Compute reactions to catalyse according to the probability
