def test_port_status_check(self):
# ssh port
self.assertFalse(util.check_port_status("google.com"))
# ssh port
self.assertTrue(util.check_port_status("research.cs.colorado.edu"))
# http port
self.assertTrue(util.check_port_status("google.com",80,2))
# wrong domain
self.assertFalse(util.check_port_status("Idonotexistwallah.wrong"))
# wrong ip
self.assertFalse(util.check_port_status("256.256.256.256"))
def test_port_status_check(self):
# ssh port
self.assertFalse(util.check_port_status("google.com"))
# ssh port
self.assertTrue(util.check_port_status("research.cs.colorado.edu"))
# http port
self.assertTrue(util.check_port_status("google.com", 80, 2))
# wrong domain
self.assertFalse(util.check_port_status("Idonotexistwallah.wrong"))
# wrong ip
self.assertFalse(util.check_port_status("256.256.256.256"))
def deploy_software(self):
ssh_priv_key = self.config.globals.ssh_priv_key
ssh_username = self.config.globals.ssh_username
ssh_timeout = int(self.config.globals.ssh_timeout)
reservations = list()
not_available = 0
for cloud in self.clouds:
for instance in cloud.get_all_floating_ips():
if self.database.check_benchmark(self.benchmark.name,
instance.instance_id):
if not check_port_status(instance.ip, 22, ssh_timeout):
LOG.error("Deploy_software: the port 22 is not "
"available right now. please try it later")
continue
cmds = list()
cmds.append("wget %s" % (self.url))
cmds.append("sudo apt-get update")
cmds.append("sudo apt-get install unzip")
cmds.append("unzip BioPerf.zip")
cmds.append("sed -i 's/read BIOPERF/#read "
"BIOPERF/g' install-BioPerf.sh")
cmds.append("./install-BioPerf.sh")
for c in cmds:
command = RemoteCommand(instance.ip,
ssh_priv_key, c)
command_return = command.execute()
if command_return != 0:
LOG.error("Deploy_software: " + command.stdout)
LOG.error("Deploy_software error: " +
command.stderr)
def deploy_software(self):
ssh_priv_key = self.config.globals.ssh_priv_key
ssh_username = self.config.globals.ssh_username
ssh_timeout = int(self.config.globals.ssh_timeout)
reservations = list()
not_available = 0;
if self.reservations:
reservations = self.reservations
else:
for cloud in self.clouds:
reservations = cloud.conn.get_all_instances()
for reservation in reservations:
for instance in reservation.instances:
if self.database.check_benchmark(self.benchmark.name, instance.id):
if not check_port_status(instance.ip_address, 22, ssh_timeout):
LOG.error("Deploy_software: the port 22 is not available right now. please try it later")
continue
cmds = list()
cmds.append("wget %s" % (self.url))
#cmds.append("apt-get update")
#cmds.append("apt-get install unzip")
cmds.append("unzip BioPerf.zip")
cmds.append("sed -i 's/read BIOPERF/#read BIOPERF/g' install-BioPerf.sh")
cmds.append("./install-BioPerf.sh")
for c in cmds:
command = RemoteCommand(instance.public_dns_name, ssh_priv_key, c)
command_return = command.execute()
if command_return !=0:
LOG.error("Deploy_software: "+command.stdout)
LOG.error("Deploy_software error: "+command.stderr)
def deploy_software(self):
ssh_priv_key = self.config.globals.ssh_priv_key
ssh_username = self.config.globals.ssh_username
ssh_timeout = int(self.config.globals.ssh_timeout)
reservations = list()
not_available = 0;
if self.reservations:
reservations = self.reservations
else:
for cloud in self.clouds:
reservations = cloud.conn.get_all_instances()
for reservation in reservations:
for instance in reservation.instances:
if self.database.check_benchmark(self.benchmark.name, instance.id):
if not check_port_status(instance.ip_address, 22, ssh_timeout):
LOG.error("Deploy_software: the port 22 is not available right now. please try it later")
continue
cmds = list()
cmds.append("rm -rf ~/*")
cmds.append("wget %s" % (self.url))
cmds.append("apt-get update")
cmds.append("apt-get install unzip")
cmds.append("unzip BioPerf.zip")
cmds.append("sed -i 's/read BIOPERF/#read BIOPERF/g' install-BioPerf.sh")
cmds.append("./install-BioPerf.sh")
cmds.append("wget ftp://ftp.cc.gatech.edu/pub/people/bader/BioPerf/swissprot.tar.gz")
cmds.append("tar -xvf swissprot.tar.gz")
cmds.append("mv Swissprot/* .")
cmds.append("wget ftp://ftp.cc.gatech.edu/pub/people/bader/BioPerf/Pfam")
cmds.append("wget ftp://ftp.cc.gatech.edu/pub/people/bader/BioPerf/nr")
cmds.append("sed -i '10 i\DATABASES=~/' ~/.profile")
cmds.append("sed -i '10 i\export DATABASES' ~/.profile")
cmds.append("sed -i '5c input='y'' ~/BioPerf/Scripts/Run-scripts/CleanOutputs.sh")
cmds.append("sed -i '21c #' ~/BioPerf/Scripts/Run-scripts/run-bioperf.sh")
cmds.append("sed -i '26c #' ~/BioPerf/Scripts/Run-scripts/run-bioperf.sh")
cmds.append("sed -i '10c arch='X'' ~/BioPerf/Scripts/Run-scripts/run-bioperf.sh")
cmds.append("sed -i '71c input3='A'' ~/BioPerf/Scripts/Run-scripts/run-bioperf.sh")
cmds.append('''sed -i "659c ch='Y';" ./BioPerf/Source-codes/Phylip/src/promlk.c''')
cmds.append("sed -i '/scanf/c //' ./BioPerf/Source-codes/Phylip/src/promlk.c")
cmds.append("cd ./BioPerf/Source-codes/Phylip/src;make promlk;cd ~")
cmds.append("mv ./BioPerf/Source-codes/Phylip/src/promlk ./BioPerf/Binaries/x86-Binaries/Phylip")
for c in cmds:
command = RemoteCommand(instance.public_dns_name, ssh_priv_key, c)
command_return = command.execute()
if command_return !=0:
LOG.error("Deploy_software: "+command.stdout)
LOG.error("Deploy_software error: "+command.stderr)
