def normalizeElevations(dems):
avgElevation = {}
validIndicesDict = {}
ranges = {}
for burnName, dem in dems.items():
validIndices = np.where(np.isfinite(dem))
validIndicesDict[burnName] = validIndices
validPixels = dem[validIndices]
avgElevation[burnName] = np.mean(validPixels)
ranges[burnName] = validPixels.max() - validPixels.min()
# vis = dem.copy()
# vis[validIndices] = 42
# plt.imshow(dem)
# plt.figure("valid")
# plt.imshow(vis)
# plt.show()
maxRange = max(ranges.values())
results = {}
for burnName, dem in dems.items():
validIndices = validIndicesDict[burnName]
# print(validIndices)
validPixels = dem[validIndices]
# print('valid pixels size:', validPixels.size)
normed = util.normalize(validPixels)
blank = np.zeros_like(dem, dtype=np.float32)
thisRange = ranges[burnName]
scaleFactor = thisRange / maxRange
blank[validIndices] = scaleFactor * normed
# print('scaleFactor is ', scaleFactor)
# plt.imshow(blank)
# plt.show()
results[burnName] = blank
return results
def normalizeNonElevations(nonDems):
splitIndices = [0]
validPixelsList = []
validIndicesList = []
names = list(nonDems.keys())
for name in names:
layer = nonDems[name]
validIndices = np.where(np.isfinite(layer))
validPixels = layer[validIndices]
validPixelsList += validPixels.tolist()
splitIndices.append(splitIndices[-1] + len(validPixels))
validIndicesList.append(validIndices)
arr = np.array(validPixelsList)
normed = util.normalize(arr)
splitIndices = splitIndices[1:]
splitBackUp = np.split(normed, splitIndices)
results = {}
for name, validIndices, normedPixels in zip(names,validIndicesList,splitBackUp):
src = nonDems[name]
img = np.zeros_like(src, dtype=np.float32)
img[validIndices] = normedPixels
results[name] = img
return results
def normalizeNonElevations(nonDems):
splitIndices = [0]
validPixelsList = []
validIndicesList = []
names = list(nonDems.keys())
for name in names:
layer = nonDems[name]
validIndices = np.where(np.isfinite(layer))
validPixels = layer[validIndices]
# print('valid indices:', validIndices)
# print('len of valid pixels', validPixels.shape, len(validPixels))
# vis = np.zeros_like(layer)
# vis[validIndices] = 42
# plt.figure('before '+name)
# plt.imshow(layer)
# plt.figure('valid '+name)
# plt.imshow(vis)
# plt.show()
validPixelsList += validPixels.tolist()
splitIndices.append(splitIndices[-1] + len(validPixels))
validIndicesList.append(validIndices)
# now layers.shape is (nburns, height, width)
arr = np.array(validPixelsList)
# print('array is', arr, arr.min(), arr.max())
normed = util.normalize(arr)
# print(normed)
# print('split indices', splitIndices)
splitIndices = splitIndices[1:]
# print('split indices', splitIndices)
splitBackUp = np.split(normed, splitIndices)
# print('split back up:', splitBackUp.shape)
results = {}
for name, validIndices, normedPixels in zip(names, validIndicesList,
splitBackUp):
# print(name, validIndices, normedPixels)
src = nonDems[name]
img = np.zeros_like(src, dtype=np.float32)
img[validIndices] = normedPixels
results[name] = img
# if normedPixels.size > 0:
# print('min and max of ', name, normedPixels.min(), normedPixels.max())
# plt.figure('normed'+name)
# plt.imshow(img)
# plt.show()
return results
def median_images(images):
print(
"---------------------- INITIALISATION DES CALCULS POUR RECUPERER LE BACKGROUND 2/4 ------------------------------------------"
)
images_normalized = normalize(images)
img_dest = Image.new("RGB", images[0].size)
dest = img_dest.load()
N = len(images)
images_pixels = []
for img in images_normalized:
images_pixels.append(img.load())
printProgressBar(0,
images_normalized[0].size[1],
prefix='Progress:',
suffix='Complete',
length=50)
for y in range(images_normalized[0].size[1]):
for x in range(images_normalized[0].size[0]):
rp = [] #listes pour les valeurs des pixels
gp = []
bp = []
for i in range(N): #pour travailler sur chaque pixel de chaque img
pix = images_pixels[i]
r1, g1, b1 = pix[x, y]
rp.append(r1) #valeurs rouge de chaque img
gp.append(g1) #valeurs verte de chaque img
bp.append(b1) #valeurs bleu de chaque img
rp.sort() #trie des listes
gp.sort()
bp.sort()
dest[x, y] = rp[N //
2], gp[N //
2], bp[N //
2] #la valeur med de chaque couleur
printProgressBar(y + 1,
images_normalized[0].size[1],
prefix='Progress:',
suffix='Complete',
length=50)
print(
"---------------------- FIN DES CALCULS POUR RECUPERER LE BACKGROUND 2/4 ------------------------------------------"
)
print()
return img_dest
def binary_merge(bkg_img, item,img_result):
_images = normalize([bkg_img,item[0],item[1],img_result])
bkg_pixels = _images[0].load()
img_pixels = _images[1].load()
mask_img = _images[2].load()
width = _images[0].size[0]
height = _images[0].size[1]
img_result_pixels = _images[3].load()
for x in range(width):
for y in range(height):
r1,g1,b1 = bkg_pixels[x,y]
r2,g2,b2 = img_pixels[x,y]
if mask_img[x,y] == (0,0,0):
img_result_pixels[x,y] = (r2,g2,b2)
def get_mask_old(bkg_img, img, img_result):
_images = normalize([bkg_img, img, img_result])
bkg_pixels = _images[0].load()
img_pixels = _images[1].load()
img_result_pixels = _images[2].load()
width = _images[0].size[0]
height = _images[0].size[1]
for x in range(width):
for y in range(height):
r1, g1, b1 = bkg_pixels[x, y]
r2, g2, b2 = img_pixels[x, y]
is_background = abs(r1 - r2) < MASK_TRESHOLD and abs(
g1 - g2) < MASK_TRESHOLD and abs(b1 - b2) < MASK_TRESHOLD
if not is_background:
img_result_pixels[x, y] = (0, 0, 0)
def get_mask(bkg_img, img):
mask_image = create_image((255, 255, 255), bkg_img)
_images = normalize([bkg_img, img, mask_image])
bkg_pixels = _images[0].load()
img_pixels = _images[1].load()
img_mask_pixels = _images[2].load()
width = _images[0].size[0]
height = _images[0].size[1]
for x in range(width):
for y in range(height):
r1, g1, b1 = bkg_pixels[x, y]
r2, g2, b2 = img_pixels[x, y]
is_background = abs(r1 - r2) < MASK_TRESHOLD and abs(
g1 - g2) < MASK_TRESHOLD and abs(b1 - b2) < MASK_TRESHOLD
if not is_background:
img_mask_pixels[x, y] = (0, 0, 0)
return mask_image
def calculateWeatherMetrics(dataset):
'''Return a dictionary mapping from (burnName, date) id's to a dictionary of named weather metrics.'''
metrics = {}
for burnName, date in dataset.getUsedBurnNamesAndDates():
wm = dataset.data.getWeather(burnName, date)
# print('for the Day', burnName, date)
# print('weather matrix is', wm)
precip = totalPrecipitation(wm)
temp = maximumTemperature1(wm)
temp2 = maximumTemperature2(wm)
hum = averageHumidity(wm)
winds = windMetrics(wm)
entry = [precip, temp, temp2, hum] + winds
metrics[(burnName, date)] = entry
# now normalize all of them
# ensure we keep order
ids = list(metrics.keys())
arr = np.array([metrics[i] for i in ids])
normed = util.normalize(arr, axis=0)
metrics = {i: nums for (i, nums) in zip(ids, normed)}
return metrics
def normalizeElevations(dems):
avgElevation = {}
validIndicesDict = {}
ranges = {}
for locName, dem in dems.items():
validIndices = np.where(np.isfinite(dem))
validIndicesDict[locName] = validIndices
validPixels = dem[validIndices]
avgElevation[locName] = np.mean(validPixels)
ranges[locName] = validPixels.max()-validPixels.min()
maxRange = max(ranges.values())
results = {}
for locName, dem in dems.items():
validIndices = validIndicesDict[locName]
validPixels = dem[validIndices]
normed = util.normalize(validPixels)
blank = np.zeros_like(dem, dtype=np.float32)
thisRange = ranges[locName]
scaleFactor = thisRange/maxRange
blank[validIndices] = scaleFactor * normed
results[locName] = blank
return results
def createCanvases(dataset):
result = {}
for burnName, date in dataset.getUsedBurnNamesAndDates():
burn = dataset.data.burns[burnName]
day = dataset.data.getDay(burnName, date)
h, w = day.startingPerim.shape
# canvas = np.zeros((h,w,3), dtype=np.uint8)
normedDEM = util.normalize(burn.layers['dem'])
canvas = cv2.cvtColor(normedDEM, cv2.COLOR_GRAY2RGB)
im2, startContour, hierarchy = cv2.findContours(
day.startingPerim.astype(np.uint8), cv2.RETR_TREE,
cv2.CHAIN_APPROX_SIMPLE)
im2, endContour, heirarchy = cv2.findContours(
day.endingPerim.astype(np.uint8), cv2.RETR_TREE,
cv2.CHAIN_APPROX_SIMPLE)
cv2.drawContours(canvas, endContour, -1, (0, 0, 1), 1)
cv2.drawContours(canvas, startContour, -1, (0, 1, 0), 1)
result[(burnName, date)] = canvas
# plt.imshow(canvas)
# plt.show()
return result