def test_Constraint_copyConstructor(self): o1 = libsbml.Constraint(2,4) o1.setMetaId("c") self.assert_( o1.getMetaId() == "c" ) text = libsbml.XMLNode.convertStringToXMLNode(" Some text ") triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "") att = libsbml.XMLAttributes() xmlns = libsbml.XMLNamespaces() xmlns.add("http://www.w3.org/1999/xhtml") p = libsbml.XMLNode(triple,att,xmlns) p.addChild(text) triple1 = libsbml.XMLTriple("message", "", "") att1 = libsbml.XMLAttributes() message = libsbml.XMLNode(triple1,att1) message.addChild(p) math = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(math) o1.setMessage(message) math = None message = None self.assert_( o1.getMath() != None ) msg = o1.getMessage() self.assert_( msg != None ) o2 = libsbml.Constraint(o1) self.assert_( o2.getMetaId() == "c" ) self.assert_( o2.getMath() != None ) msg = o2.getMessage() self.assert_( msg != None ) self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass
def test_XMLTriple_create(self): t = libsbml.XMLTriple() self.assert_(t != None) self.assert_(t.isEmpty() != False) _dummyList = [t] _dummyList[:] = [] del _dummyList t = libsbml.XMLTriple("attr", "uri", "prefix") self.assert_(("attr" != t.getName()) == False) self.assert_(("uri" != t.getURI()) == False) self.assert_(("prefix" != t.getPrefix()) == False) self.assert_(("prefix:attr" != t.getPrefixedName()) == False) self.assert_(t.isEmpty() == False) _dummyList = [t] _dummyList[:] = [] del _dummyList t = libsbml.XMLTriple("attr", "uri", "") self.assert_(("attr" != t.getName()) == False) self.assert_(("uri" != t.getURI()) == False) self.assert_(t.getPrefix() == "") self.assert_(("attr" != t.getPrefixedName()) == False) self.assert_(t.isEmpty() == False) _dummyList = [t] _dummyList[:] = [] del _dummyList pass
def test_CVTerm_createFromNode(self): qual_triple = libsbml.XMLTriple("is", "", "bqbiol") bag_triple = libsbml.XMLTriple() li_triple = libsbml.XMLTriple() att = libsbml.XMLAttributes() att.add("", "This is my resource") att1 = libsbml.XMLAttributes() li_token = libsbml.XMLToken(li_triple, att) bag_token = libsbml.XMLToken(bag_triple, att1) qual_token = libsbml.XMLToken(qual_triple, att1) li = libsbml.XMLNode(li_token) bag = libsbml.XMLNode(bag_token) node = libsbml.XMLNode(qual_token) bag.addChild(li) node.addChild(bag) term = libsbml.CVTerm(node) self.assert_(term != None) self.assert_(term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER) self.assert_(term.getBiologicalQualifierType() == libsbml.BQB_IS) xa = term.getResources() self.assert_(xa.getLength() == 1) self.assert_(("rdf:resource" == xa.getName(0))) self.assert_(("This is my resource" == xa.getValue(0))) _dummyList = [qual_triple] _dummyList[:] = [] del _dummyList _dummyList = [bag_triple] _dummyList[:] = [] del _dummyList _dummyList = [li_triple] _dummyList[:] = [] del _dummyList _dummyList = [li_token] _dummyList[:] = [] del _dummyList _dummyList = [bag_token] _dummyList[:] = [] del _dummyList _dummyList = [qual_token] _dummyList[:] = [] del _dummyList _dummyList = [att] _dummyList[:] = [] del _dummyList _dummyList = [att1] _dummyList[:] = [] del _dummyList _dummyList = [term] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [bag] _dummyList[:] = [] del _dummyList _dummyList = [li] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_clearAttributes(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5") i = node.addAttr( "name1", "val1") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 1 ) i = node.addAttr( "name2", "val2", "http://name1.org/", "p1") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 2 ) i = node.addAttr(xt2, "val2") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 3 ) i = node.addAttr( "name4", "val4") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 4 ) i = node.clearAttributes() self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getAttributes().getLength() == 0 ) _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass
def test_Constraint_setMessage(self): text = libsbml.XMLNode.convertStringToXMLNode(" Some text ", None) triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "") att = libsbml.XMLAttributes() xmlns = libsbml.XMLNamespaces() xmlns.add("http://www.w3.org/1999/xhtml", "") p = libsbml.XMLNode(triple, att, xmlns) p.addChild(text) triple1 = libsbml.XMLTriple("message", "", "") att1 = libsbml.XMLAttributes() node = libsbml.XMLNode(triple1, att1) node.addChild(p) self.C.setMessage(node) self.assert_(self.C.getMessage() != node) self.assert_(self.C.isSetMessage() == True) self.C.setMessage(self.C.getMessage()) self.assert_(self.C.getMessage() != node) self.assert_(self.C.getMessageString() != None) self.C.unsetMessage() self.assertEqual(False, self.C.isSetMessage()) if (self.C.getMessage() != None): pass _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def add_annotation_complex(model, model_id, participants): species = model.getSpecies(model_id) xmlns = libsbml.XMLNamespaces() xmlns.add('http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') rdf_triple = libsbml.XMLTriple( 'RDF', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') rdf_token = libsbml.XMLToken(rdf_triple, libsbml.XMLAttributes(), xmlns) annotation = libsbml.XMLNode(rdf_token) if species: participants_xml_triple = libsbml.XMLTriple( 'Participants', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') participants_xml_token = \ libsbml.XMLToken(participants_xml_triple, libsbml.XMLAttributes()) participants_xml_node = libsbml.XMLNode(participants_xml_token) participant_xml_triple = libsbml.XMLTriple( 'Participant', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'rdf') for iii in participants: resource_att = libsbml.XMLAttributes() resource_att.add('participant', str(iii)) subject_token = libsbml.XMLToken(participant_xml_triple, resource_att) subject_token.setEnd() participants_xml_node.addChild(libsbml.XMLNode(subject_token)) annotation.addChild(participants_xml_node) species.appendAnnotation(annotation)
def test_XMLToken_newSetters_setAttributes1(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple, attr) nattr = libsbml.XMLAttributes() xt1 = libsbml.XMLTriple("name1", "http://name1.org/", "p1") nattr.add(xt1, "val1") i = token.setAttributes(nattr) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(token.isAttributesEmpty() == False) _dummyList = [nattr] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList _dummyList = [xt1] _dummyList[:] = [] del _dummyList pass
def test_XMLToken_newSetters_addAttributes2(self): triple = libsbml.XMLTriple("test", "", "") token = libsbml.XMLToken(triple) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") i = token.addAttr("name1", "val1") self.assert_(i == libsbml.LIBSBML_INVALID_XML_OPERATION) self.assert_(token.getAttributesLength() == 0) self.assert_(token.isAttributesEmpty() == True) i = token.addAttr("name2", "val2", "http://name1.org/", "p1") self.assert_(i == libsbml.LIBSBML_INVALID_XML_OPERATION) self.assert_(token.getAttributesLength() == 0) self.assert_(token.isAttributesEmpty() == True) i = token.addAttr(xt2, "val2") self.assert_(i == libsbml.LIBSBML_INVALID_XML_OPERATION) self.assert_(token.getAttributesLength() == 0) self.assert_(token.isAttributesEmpty() == True) _dummyList = [xt2] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_removeAttributes(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5") i = node.addAttr("name1", "val1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 1) i = node.addAttr("name2", "val2", "http://name1.org/", "p1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 2) i = node.addAttr(xt2, "val2") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 3) i = node.addAttr("name4", "val4") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 4) i = node.removeAttr(7) self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) i = node.removeAttr("name7") self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) i = node.removeAttr("name7", "namespaces7") self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) i = node.removeAttr(xt1) self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) self.assert_(node.getAttributes().getLength() == 4) i = node.removeAttr(3) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 3) i = node.removeAttr("name1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 2) i = node.removeAttr("name2", "http://name1.org/") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 1) i = node.removeAttr(xt2) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(node.getAttributes().getLength() == 0) _dummyList = [xt1] _dummyList[:] = [] del _dummyList _dummyList = [xt2] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def test_Triple_copyConstructor(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") self.assert_( t.getName() == "sarah" ) self.assert_( t.getURI() == "http://foo.org/" ) self.assert_( t.getPrefix() == "bar" ) t2 = libsbml.XMLTriple(t) self.assert_( t2.getName() == "sarah" ) self.assert_( t2.getURI() == "http://foo.org/" ) self.assert_( t2.getPrefix() == "bar" ) t = None t2 = None pass
def test_Triple_assignmentOperator(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") self.assert_( t.getName() == "sarah" ) self.assert_( t.getURI() == "http://foo.org/" ) self.assert_( t.getPrefix() == "bar" ) t2 = libsbml.XMLTriple() t2 = t self.assert_( t2.getName() == "sarah" ) self.assert_( t2.getURI() == "http://foo.org/" ) self.assert_( t2.getPrefix() == "bar" ) t = None t2 = None pass
def test_XMLNode_removeNamespaces(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) i = node.addNamespace( "http://test1.org/", "test1") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 1 ) i = node.addNamespace( "http://test2.org/", "test2") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 2 ) i = node.removeNamespace(7) self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) nms = node.getNamespaces() self.assert_( nms.getLength() == 2 ) i = node.removeNamespace( "name7") self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) nms = node.getNamespaces() self.assert_( nms.getLength() == 2 ) i = node.removeNamespace(0) self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 1 ) i = node.removeNamespace( "test2") self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() self.assert_( nms.getLength() == 0 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass
def test_XMLNode_namespace_add(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) self.assert_(node.getNamespacesLength() == 0) self.assert_(node.isNamespacesEmpty() == True) node.addNamespace("http://test1.org/", "test1") self.assert_(node.getNamespacesLength() == 1) self.assert_(node.isNamespacesEmpty() == False) node.addNamespace("http://test2.org/", "test2") self.assert_(node.getNamespacesLength() == 2) self.assert_(node.isNamespacesEmpty() == False) node.addNamespace("http://test1.org/", "test1a") self.assert_(node.getNamespacesLength() == 3) self.assert_(node.isNamespacesEmpty() == False) node.addNamespace("http://test1.org/", "test1a") self.assert_(node.getNamespacesLength() == 3) self.assert_(node.isNamespacesEmpty() == False) self.assert_( (node.getNamespaceIndex("http://test1.org/") == -1) == False) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLToken_newSetters_setNamespaces1(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple, attr) ns = libsbml.XMLNamespaces() self.assert_(token.getNamespacesLength() == 0) self.assert_(token.isNamespacesEmpty() == True) ns.add("http://test1.org/", "test1") i = token.setNamespaces(ns) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(token.getNamespacesLength() == 1) self.assert_(token.isNamespacesEmpty() == False) _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList _dummyList = [ns] _dummyList[:] = [] del _dummyList pass
def test_Node_assignmentOperator(self): att = libsbml.XMLAttributes() t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") token = libsbml.XMLToken(t,att,3,4) node = libsbml.XMLNode(token) child = libsbml.XMLNode() node.addChild(child) self.assert_( node.getNumChildren() == 1 ) self.assert_( node.getName() == "sarah" ) self.assert_( node.getURI() == "http://foo.org/" ) self.assert_( node.getPrefix() == "bar" ) self.assert_( node.isEnd() == False ) self.assert_( node.isEOF() == False ) self.assert_( node.getLine() == 3 ) self.assert_( node.getColumn() == 4 ) node2 = libsbml.XMLNode() node2 = node self.assert_( node2.getNumChildren() == 1 ) self.assert_( node2.getName() == "sarah" ) self.assert_( node2.getURI() == "http://foo.org/" ) self.assert_( node2.getPrefix() == "bar" ) self.assert_( node2.isEnd() == False ) self.assert_( node2.isEOF() == False ) self.assert_( node2.getLine() == 3 ) self.assert_( node2.getColumn() == 4 ) t = None token = None node = None node2 = None pass
def _setThresholdXml(self, value): """ Uses the value to update the internal libsbml.XMLNode structure. If there is a reference to an existing XML node (from loading the file) it is used. Otherwise, it's created. @since: 2011-05-23 """ if not self.thresholdNode: # have to create the XML node thresholdNodeTriplet = libsbml.XMLTriple(XML_SCALE, XML_THRESHOLD_NAMESPACE, "") thresholdNodeAttribute = libsbml.XMLAttributes() thresholdNodeAttribute.add(XML_THRESHOLD_VALUE, str(value)) self.thresholdNode = libsbml.XMLNode(thresholdNodeTriplet, thresholdNodeAttribute) namespace = libsbml.XMLNamespaces( ) # seems to be necessary to do this again namespace.add(XML_THRESHOLD_NAMESPACE) self.thresholdNode.setNamespaces(namespace) self.Item.appendAnnotation(self.thresholdNode) else: thresholdNodeAttribute = libsbml.XMLAttributes() thresholdNodeAttribute.add(XML_THRESHOLD_VALUE, str(value)) self.thresholdNode.setAttributes(thresholdNodeAttribute)
def test_XMLToken_create(self): token = libsbml.XMLToken() self.assert_(token != None) _dummyList = [token] _dummyList[:] = [] del _dummyList triple = libsbml.XMLTriple("attr", "uri", "prefix") token = libsbml.XMLToken(triple) self.assert_(token != None) self.assert_(("attr" != token.getName()) == False) self.assert_(("prefix" != token.getPrefix()) == False) self.assert_(("uri" != token.getURI()) == False) _dummyList = [token] _dummyList[:] = [] del _dummyList attr = libsbml.XMLAttributes() self.assert_(attr != None) attr.add("attr2", "value") token = libsbml.XMLToken(triple, attr) self.assert_(token != None) returnattr = token.getAttributes() self.assert_(("attr2" != returnattr.getName(0)) == False) _dummyList = [token] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_clearNamespaces(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) i = node.addNamespace("http://test1.org/", "test1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) nms = node.getNamespaces() self.assert_(nms.getLength() == 1) i = node.addNamespace("http://test2.org/", "test2") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) nms = node.getNamespaces() self.assert_(nms.getLength() == 2) i = node.clearNamespaces() self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) nms = node.getNamespaces() self.assert_(nms.getLength() == 0) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [node] _dummyList[:] = [] del _dummyList pass
def _setConstraintsXml(self, type, lower, upper): """ @since: 2012-01-25 """ if not self._constraintsXmlNode: # have to create the XML node constraintsNodeTriplet = libsbml.XMLTriple(XML_CONSTRAINTS, XML_CONSTRAINTS_NAMESPACE, "") constraintsNodeAttribute = libsbml.XMLAttributes() constraintsNodeAttribute.add(XML_CONSTRAINTS_TYPE, str(type)) constraintsNodeAttribute.add(XML_CONSTRAINTS_LOWERBOUND, str(lower)) constraintsNodeAttribute.add(XML_CONSTRAINTS_UPPERBOUND, str(upper)) self._constraintsXmlNode = libsbml.XMLNode(constraintsNodeTriplet, constraintsNodeAttribute) namespace = libsbml.XMLNamespaces() # seems to be necessary to do this again namespace.add(XML_CONSTRAINTS_NAMESPACE) self._constraintsXmlNode.setNamespaces(namespace) self.Item.appendAnnotation(self._constraintsXmlNode) else: constraintsNodeAttribute = libsbml.XMLAttributes() constraintsNodeAttribute.add(XML_CONSTRAINTS_TYPE, str(type)) constraintsNodeAttribute.add(XML_CONSTRAINTS_LOWERBOUND, str(lower)) constraintsNodeAttribute.add(XML_CONSTRAINTS_UPPERBOUND, str(upper)) self._constraintsXmlNode.setAttributes(constraintsNodeAttribute)
def test_XMLAttributes_remove1(self): xa = libsbml.XMLAttributes() xt2 = libsbml.XMLTriple("name2", "http://name2.org/", "p2") i = xa.add("name1", "val1", "http://name1.org/", "p1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) i = xa.add(xt2, "val2") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) i = xa.add("noprefix", "val3") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) i = xa.add("name4", "val4", "http://name4.org/", "p1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(xa.getLength() == 4) i = xa.remove(4) self.assert_(i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE) i = xa.remove(3) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(xa.getLength() == 3) i = xa.remove("noprefix") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(xa.getLength() == 2) i = xa.remove(xt2) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(xa.getLength() == 1) i = xa.remove("name1", "http://name1.org/") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(xa.getLength() == 0) _dummyList = [xa] _dummyList[:] = [] del _dummyList _dummyList = [xt2] _dummyList[:] = [] del _dummyList pass
def test_XMLToken_namespace_get(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple, attr) token.addNamespace("http://test1.org/", "test1") token.addNamespace("http://test2.org/", "test2") token.addNamespace("http://test3.org/", "test3") token.addNamespace("http://test4.org/", "test4") token.addNamespace("http://test5.org/", "test5") token.addNamespace("http://test6.org/", "test6") token.addNamespace("http://test7.org/", "test7") token.addNamespace("http://test8.org/", "test8") token.addNamespace("http://test9.org/", "test9") self.assert_(token.getNamespacesLength() == 9) self.assert_(token.getNamespaceIndex("http://test1.org/") == 0) self.assert_(("test2" != token.getNamespacePrefix(1)) == False) self.assert_(( "test1" != token.getNamespacePrefix("http://test1.org/")) == False) self.assert_( ("http://test2.org/" != token.getNamespaceURI(1)) == False) self.assert_( ("http://test2.org/" != token.getNamespaceURI("test2")) == False) self.assert_(token.getNamespaceIndex("http://test1.org/") == 0) self.assert_(token.getNamespaceIndex("http://test2.org/") == 1) self.assert_(token.getNamespaceIndex("http://test5.org/") == 4) self.assert_(token.getNamespaceIndex("http://test9.org/") == 8) self.assert_(token.getNamespaceIndex("http://testX.org/") == -1) self.assert_(token.hasNamespaceURI("http://test1.org/") != False) self.assert_(token.hasNamespaceURI("http://test2.org/") != False) self.assert_(token.hasNamespaceURI("http://test5.org/") != False) self.assert_(token.hasNamespaceURI("http://test9.org/") != False) self.assert_(token.hasNamespaceURI("http://testX.org/") == False) self.assert_(token.getNamespaceIndexByPrefix("test1") == 0) self.assert_(token.getNamespaceIndexByPrefix("test5") == 4) self.assert_(token.getNamespaceIndexByPrefix("test9") == 8) self.assert_(token.getNamespaceIndexByPrefix("testX") == -1) self.assert_(token.hasNamespacePrefix("test1") != False) self.assert_(token.hasNamespacePrefix("test5") != False) self.assert_(token.hasNamespacePrefix("test9") != False) self.assert_(token.hasNamespacePrefix("testX") == False) self.assert_( token.hasNamespaceNS("http://test1.org/", "test1") != False) self.assert_( token.hasNamespaceNS("http://test5.org/", "test5") != False) self.assert_( token.hasNamespaceNS("http://test9.org/", "test9") != False) self.assert_( token.hasNamespaceNS("http://testX.org/", "testX") == False) _dummyList = [token] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_addChild3(self): triple = libsbml.XMLTriple("test","","") node = libsbml.XMLNode(triple) node2 = libsbml.XMLNode() i = node.addChild(node2) self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) self.assert_( node.getNumChildren() == 0 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList pass
def test_XMLToken_newSetters_setTriple2(self): triple = libsbml.XMLTriple("test", "", "") token = libsbml.XMLToken("This is text") i = token.setTriple(triple) self.assert_(i == libsbml.LIBSBML_INVALID_XML_OPERATION) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList pass
def test_XMLToken_newSetters_addAttributes1(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple, attr) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") i = token.addAttr("name1", "val1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(token.getAttributesLength() == 1) self.assert_(token.isAttributesEmpty() == False) self.assert_(("name1" != token.getAttrName(0)) == False) self.assert_(("val1" != token.getAttrValue(0)) == False) i = token.addAttr("name2", "val2", "http://name1.org/", "p1") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(token.getAttributesLength() == 2) self.assert_(token.isAttributesEmpty() == False) self.assert_(("name2" != token.getAttrName(1)) == False) self.assert_(("val2" != token.getAttrValue(1)) == False) self.assert_(("http://name1.org/" != token.getAttrURI(1)) == False) self.assert_(("p1" != token.getAttrPrefix(1)) == False) i = token.addAttr(xt2, "val2") self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(token.getAttributesLength() == 3) self.assert_(token.isAttributesEmpty() == False) self.assert_(("name3" != token.getAttrName(2)) == False) self.assert_(("val2" != token.getAttrValue(2)) == False) self.assert_(("http://name3.org/" != token.getAttrURI(2)) == False) self.assert_(("p3" != token.getAttrPrefix(2)) == False) _dummyList = [xt2] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList pass
def test_XMLToken_newSetters_setTriple1(self): triple = libsbml.XMLTriple("test", "", "") token = libsbml.XMLToken() i = token.setTriple(triple) self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS) self.assert_(("test" == token.getName())) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList pass
def test_SyntaxChecker_validXHTML(self): NS24 = libsbml.SBMLNamespaces(2,4) NS31 = libsbml.SBMLNamespaces(3,1) toptriple = libsbml.XMLTriple("notes", "", "") triple = libsbml.XMLTriple("p", "", "") att = libsbml.XMLAttributes() ns = libsbml.XMLNamespaces() ns.add( "http://www.w3.org/1999/xhtml", "") tt = libsbml.XMLToken("This is my text") n1 = libsbml.XMLNode(tt) toptoken = libsbml.XMLToken(toptriple,att) topnode = libsbml.XMLNode(toptoken) token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) topnode.addChild(node) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == True ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) triple = libsbml.XMLTriple("html", "", "") token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) topnode.removeChild(0) topnode.addChild(node) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) triple = libsbml.XMLTriple("html", "", "") ns.clear() token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) topnode.removeChild(0) topnode.addChild(node) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == False ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == False ) pass
def test_XMLNode_addChild2(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) node2 = libsbml.XMLNode() i = node.addChild(node2) self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( node.getNumChildren() == 1 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList pass
def test_XMLToken_newSetters_addNamespaces2(self): triple = libsbml.XMLTriple("test", "", "") token = libsbml.XMLToken(triple) self.assert_(token.getNamespacesLength() == 0) self.assert_(token.isNamespacesEmpty() == True) i = token.addNamespace("http://test1.org/", "test1") self.assert_(i == libsbml.LIBSBML_INVALID_XML_OPERATION) self.assert_(token.getNamespacesLength() == 0) self.assert_(token.isNamespacesEmpty() == True) _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [token] _dummyList[:] = [] del _dummyList pass
def test_XMLNode_namespace_remove(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple, attr) node.addNamespace("http://test1.org/", "test1") node.addNamespace("http://test2.org/", "test2") node.addNamespace("http://test3.org/", "test3") node.addNamespace("http://test4.org/", "test4") node.addNamespace("http://test5.org/", "test5") self.assert_(node.getNamespacesLength() == 5) node.removeNamespace(4) self.assert_(node.getNamespacesLength() == 4) node.removeNamespace(3) self.assert_(node.getNamespacesLength() == 3) node.removeNamespace(2) self.assert_(node.getNamespacesLength() == 2) node.removeNamespace(1) self.assert_(node.getNamespacesLength() == 1) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 0) node.addNamespace("http://test1.org/", "test1") node.addNamespace("http://test2.org/", "test2") node.addNamespace("http://test3.org/", "test3") node.addNamespace("http://test4.org/", "test4") node.addNamespace("http://test5.org/", "test5") self.assert_(node.getNamespacesLength() == 5) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 4) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 3) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 2) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 1) node.removeNamespace(0) self.assert_(node.getNamespacesLength() == 0) _dummyList = [node] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass
def test_XMLToken_namespace_remove(self): triple = libsbml.XMLTriple("test", "", "") attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple, attr) token.addNamespace("http://test1.org/", "test1") token.addNamespace("http://test2.org/", "test2") token.addNamespace("http://test3.org/", "test3") token.addNamespace("http://test4.org/", "test4") token.addNamespace("http://test5.org/", "test5") self.assert_(token.getNamespacesLength() == 5) token.removeNamespace(4) self.assert_(token.getNamespacesLength() == 4) token.removeNamespace(3) self.assert_(token.getNamespacesLength() == 3) token.removeNamespace(2) self.assert_(token.getNamespacesLength() == 2) token.removeNamespace(1) self.assert_(token.getNamespacesLength() == 1) token.removeNamespace(0) self.assert_(token.getNamespacesLength() == 0) token.addNamespace("http://test1.org/", "test1") token.addNamespace("http://test2.org/", "test2") token.addNamespace("http://test3.org/", "test3") token.addNamespace("http://test4.org/", "test4") token.addNamespace("http://test5.org/", "test5") self.assert_(token.getNamespacesLength() == 5) token.removeNamespace(0) self.assert_(token.getNamespacesLength() == 4) token.removeNamespace(0) self.assert_(token.getNamespacesLength() == 3) token.removeNamespace(0) self.assert_(token.getNamespacesLength() == 2) token.removeNamespace(0) self.assert_(token.getNamespacesLength() == 1) token.removeNamespace(0) self.assert_(token.getNamespacesLength() == 0) _dummyList = [token] _dummyList[:] = [] del _dummyList _dummyList = [triple] _dummyList[:] = [] del _dummyList _dummyList = [attr] _dummyList[:] = [] del _dummyList pass