def __init__(self, subject, *args):
"""Set up a TASK child class environment.
Initialise the Global Configuration, the Logger, the system load routines.
Define a list of dependencies prerequisite to run this tasks.
Define, create and aliases a Working directory for the tasks.
If more arguments have been supplied to generic tasks, GenericTask will create an alias
for each additionnal arg adding the suffix Dir to the name provided
on the first optionnal arg provided to __init__
"""
self.__order = self.initializeTasksOrder()
self.__name = self.__class__.__name__.lower()
self.__moduleName = self.__class__.__module__.split(".")[-1]
self.__cleanupBeforeImplement = True
self.config = subject.getConfig()
self.subject = subject
self.subjectDir = self.subject.getDir()
self.toadDir = self.config.get('arguments', 'toad_dir')
self.workingDir = os.path.join(self.subjectDir, self.__moduleName)
self.logDir = os.path.join(self.subjectDir, self.get('dir', 'log'))
self.qaDir = os.path.join(self.subjectDir, '00-qa')
self.tasksAsReferences = None
Logger.__init__(self, subject.getLogDir())
Load.__init__(self, self.config)
Qa.__init__(self)
self.dependencies = []
self.__dependenciesDirNames = {}
for arg in args:
self.dependencies.append(arg)
def __init__(self, subject, *args):
"""Set up a TASK child class environment.
Initialise the Global Configuration, the Logger, the system load routines.
Define a list of dependencies prerequisite to run this tasks.
Define, create and aliases a Working directory for the tasks.
If more arguments have been supplied to generic tasks, GenericTask will create an alias
for each additionnal arg adding the suffix Dir to the name provided
on the first optionnal arg provided to __init__
"""
self.__order = self.initializeTasksOrder()
self.__name = self.__class__.__name__.lower()
self.__moduleName = self.__class__.__module__.split(".")[-1]
self.__cleanupBeforeImplement = True
self.config = subject.getConfig()
self.subject = subject
self.subjectDir = self.subject.getDir()
self.toadDir = self.config.get('arguments', 'toad_dir')
self.workingDir = os.path.join(self.subjectDir, self.__moduleName)
self.logDir = os.path.join(self.subjectDir, self.get('dir', 'log'))
self.qaDir = os.path.join(self.subjectDir, '00-qa')
self.tasksAsReferences = None
Logger.__init__(self, subject.getLogDir())
Load.__init__(self, self.config)
Qa.__init__(self)
self.dependencies = []
self.__dependenciesDirNames = {}
for arg in args:
self.dependencies.append(arg)
# Needed for tractquerier and tractfiltering task
self._defaultQuery = None
self.queriesFile = self._tractquerierFile('queries',
'queries_freesurfer6')
self.tq_dictFile = self._tractquerierFile('tq_dict',
'tq_dict_freesurfer6')
