import load_synth_extract
import general_tm_utils
if __name__ == "__main__":
from stephen_laptop_conf import *
synthottolid="93302"
studytreelist = [
#"pg_1989_4077", # Lilium ; might be non-monophyletic (Nomocharis aperta=Lilium apertum)
]
print "loading synthottolid:",synthottolid
print "loading studytreelist:",studytreelist
download = True
if download:
general_tm_utils.get_all_studies_opentreeapi(studytreelist,studyloc)
for i in studytreelist:
tstudy_list = [i]
generallogfileloc = "/home/smitty/TEMP/"+i+".log"
ttfntreefn = "/home/smitty/TEMP/"+i+".tre"
load_synth_extract.run_load_single_ttfn(dott,dload,studyloc,tstudy_list,javapre,treemloc,generallogfileloc,dsynth,synthottolid,treefn,ttfntreefn)
import load_synth_extract
from metazoa_all import studytreelist
if __name__ == "__main__":
from wopr_conf_TEMP import *
synthottolid = "691846" # metazoa
print "loading synthottolid:", synthottolid
print "loading studytreelist:", studytreelist
for i in studytreelist:
tstudy_list = [i]
generallogfileloc = "loadlog_JWB/" + i + ".log"
ttfntreefn = "loadlog_JWB/" + i + ".tre"
load_synth_extract.run_load_single_ttfn(dott, dload, studyloc,
tstudy_list, javapre, treemloc,
generallogfileloc, dsynth,
synthottolid, treefn,
ttfntreefn)