def multi_variant_rsid_page(rsid):
db = get_db()
try:
_log()
variants = lookups.get_variants_by_rsid(db, rsid)
if variants is None or len(variants) == 0:
return not_found_page("There are no variants with the rsid '{}'".format(rsid))
return not_found_page('There are multiple variants at the location of rsid {}: {}'.format(
rsid,
', '.join('{chrom}-{pos}-{ref}-{alt}'.format(**variant) for variant in variants)))
except:_err(); abort(500)
def dbsnp_page(rsid):
db = get_db()
try:
variants = lookups.get_variants_by_rsid(db, rsid)
chrom = None
start = None
stop = None
print 'Rendering rsid: %s' % rsid
return render_template('region.html',
rsid=rsid,
variants_in_region=variants,
chrom=chrom,
start=start,
stop=stop,
coverage=None,
genes_in_region=None)
except Exception, e:
print 'Failed on rsid:', rsid, ';Error=', traceback.format_exc()
abort(404)
def dbsnp_page(rsid):
db = get_db()
try:
variants = lookups.get_variants_by_rsid(db, rsid)
chrom = None
start = None
stop = None
print 'Rendering rsid: %s' % rsid
return render_template(
'region.html',
rsid=rsid,
variants_in_region=variants,
chrom=chrom,
start=start,
stop=stop,
coverage=None,
genes_in_region=None
)
except Exception, e:
print 'Failed on rsid:', rsid, ';Error=', traceback.format_exc()
abort(404)
def dbsnp_page(rsid):
db = get_db()
try:
variants = lookups.get_variants_by_rsid(db, rsid)
chrom = None
start = None
stop = None
print "Rendering rsid: %s" % rsid
return render_template(
"region.html",
rsid=rsid,
variants_in_region=variants,
chrom=chrom,
start=start,
stop=stop,
coverage=None,
genes_in_region=None,
)
except Exception, e:
print "Failed on rsid:", rsid, ";Error=", e
abort(404)