Ejemplo n.º 1
0
    'DsInh_b': 0.,
    'DsInh_tauw': 1e9
}

if __name__ == '__main__':

    import sys
    sys.path.append('../..')
    import main as ntwk

    if sys.argv[-1] == 'plot':
        ## load file
        data = ntwk.load_dict_from_hdf5('CellRep2019_data.h5')
        print(data)
        # ## plot
        fig, _ = ntwk.raster_and_Vm_plot(data, smooth_population_activity=10.)
        ntwk.show()

    else:
        import numpy as np
        from analyz.processing.signanalysis import smooth

        NTWK = ntwk.build_populations(Model, ['RecExc', 'RecInh', 'DsInh'],
                                      AFFERENT_POPULATIONS=['AffExc'],
                                      with_raster=True,
                                      with_Vm=4,
                                      verbose=True)

        ntwk.build_up_recurrent_connections(NTWK, SEED=5, verbose=True)

        #######################################
Ejemplo n.º 2
0
    # ######################
    # ## ----- Plot ----- ##
    # ######################

    # vision_model = ntwk.earlyVis_model(from_file='drifting-grating-data.npz')
    # ps = ntwk.vision_plot(model=vision_model)
    # fig0 = ps.protocol_plot()

    ## load file
    data = ntwk.load_dict_from_hdf5('visual_input_data.h5')

    print(data['iRASTER_AffExc'])
    print(data['tRASTER_AffExc'])

    # ## plot
    fig, _ = ntwk.raster_and_Vm_plot(data, ['Exc', 'Inh', 'DsInh', 'AffExc'],
                                     smooth_population_activity=10.)
    ntwk.show()

else:

    if False:

        params = ntwk.vision_params.copy()
        params['rf_theta'] = [3 * np.pi / 12., 5. * np.pi / 12.]
        params['rf_psi'] = [0., 0.]
        params['rf_freq'] = [0.06, 0.08]
        params['Ncells'] = 50

        vision_model = ntwk.earlyVis_model(params=params)
        vision_model.full_process('drifting-grating', '')
        vision_model.save_data('drifting-grating-data.npz')