def _get_data_for_plot(axes, workspace, kwargs, with_dy=False, with_dx=False):
if isinstance(workspace, mantid.dataobjects.MDHistoWorkspace):
(normalization, kwargs) = get_normalization(workspace, **kwargs)
indices, kwargs = get_indices(workspace, **kwargs)
(x, y, dy) = get_md_data1d(workspace, normalization, indices)
dx = None
axis = None
else:
axis = MantidAxType(kwargs.pop("axis", MantidAxType.SPECTRUM))
normalize_by_bin_width, kwargs = get_normalize_by_bin_width(
workspace, axes, **kwargs)
workspace_index, distribution, kwargs = get_wksp_index_dist_and_label(
workspace, axis, **kwargs)
if axis == MantidAxType.BIN:
# Overwrite any user specified xlabel
axes.set_xlabel("Spectrum")
x, y, dy, dx = get_bins(workspace, workspace_index, with_dy)
elif axis == MantidAxType.SPECTRUM:
x, y, dy, dx = get_spectrum(workspace, workspace_index,
normalize_by_bin_width, with_dy,
with_dx)
else:
raise ValueError(
"Axis {} is not a valid axis number.".format(axis))
indices = None
return x, y, dy, dx, indices, axis, kwargs
def plot(axes, workspace, *args, **kwargs):
'''
3D plots - line plots
:param axes: class:`matplotlib.axes.Axes3D` object that will do the plotting
:param workspace: :class:`mantid.api.MatrixWorkspace` or
:class:`mantid.api.IMDHistoWorkspace` to extract the data from
:param zdir: Which direction to use as z ('x', 'y' or 'z') when plotting a 2D set.
:param indices: Specify which slice of an MDHistoWorkspace to use when plotting. Needs to be a tuple
and will be interpreted as a list of indices. You need to use ``slice(None)`` to
select which dimension to plot. *e.g.* to select the second axis to plot from a
3D volume use ``indices=(5, slice(None), 10)`` where the 5/10 are the bins selected
for the other 2 axes.
:param slicepoint: Specify which slice of an MDHistoWorkspace to use when plotting in the dimension units.
You need to use ``None`` to select which dimension to plot. *e.g.* to select the second
axis to plot from a 3D volume use ``slicepoint=(1.0, None, 2.0)`` where the 1.0/2.0 are
the dimension selected for the other 2 axes.
'''
if isinstance(workspace, mantid.dataobjects.MDHistoWorkspace):
(normalization, kwargs) = get_normalization(workspace, **kwargs)
indices, kwargs = get_indices(workspace, **kwargs)
(x, y, z) = get_md_data1d(workspace, normalization, indices)
else:
(wksp_index, distribution,
kwargs) = get_wksp_index_dist_and_label(workspace, **kwargs)
(x, z, _, _) = get_spectrum(workspace,
wksp_index,
distribution,
withDy=False,
withDx=False)
y_val = workspace.getAxis(1).extractValues()[wksp_index]
y = [y_val for _ in range(len(x))] # fill x size array with y value
_set_labels_3d(axes, workspace)
return axes.plot(x, y, z, *args, **kwargs)
def scatter(axes, workspace, *args, **kwargs):
'''
Unpack mantid workspace and render it with matplotlib. ``args`` and
``kwargs`` are passed to :py:meth:`matplotlib.axes.Axes.scatter` after special
keyword arguments are removed. This will automatically label the
line according to the spectrum number unless specified otherwise.
:param axes: :class:`matplotlib.axes.Axes` object that will do the plotting
:param workspace: :class:`mantid.api.MatrixWorkspace` or :class:`mantid.api.IMDHistoWorkspace`
to extract the data from
:param specNum: spectrum number to plot if MatrixWorkspace
:param wkspIndex: workspace index to plot if MatrixWorkspace
:param distribution: ``None`` (default) asks the workspace. ``False`` means
divide by bin width. ``True`` means do not divide by bin width.
Applies only when the the workspace is a MatrixWorkspace histogram.
:param normalization: ``None`` (default) ask the workspace. Applies to MDHisto workspaces. It can override
the value from displayNormalizationHisto. It checks only if
the normalization is mantid.api.MDNormalization.NumEventsNormalization
:param indices: Specify which slice of an MDHistoWorkspace to use when plotting. Needs to be a tuple
and will be interpreted as a list of indices. You need to use ``slice(None)`` to
select which dimension to plot. *e.g.* to select the second axis to plot from a
3D volume use ``indices=(5, slice(None), 10)`` where the 5/10 are the bins selected
for the other 2 axes.
:param slicepoint: Specify which slice of an MDHistoWorkspace to use when plotting in the dimension units.
You need to use ``None`` to select which dimension to plot. *e.g.* to select the second
axis to plot from a 3D volume use ``slicepoint=(1.0, None, 2.0)`` where the 1.0/2.0 are
the dimension selected for the other 2 axes.
For matrix workspaces with more than one spectra, either ``specNum`` or ``wkspIndex``
needs to be specified. Giving both will generate a :class:`RuntimeError`. There is no similar
keyword for MDHistoWorkspaces. These type of workspaces have to have exactly one non integrated
dimension
'''
if isinstance(workspace, mantid.dataobjects.MDHistoWorkspace):
(normalization, kwargs) = get_normalization(workspace, **kwargs)
indices, kwargs = get_indices(workspace, **kwargs)
(x, y, _) = get_md_data1d(workspace, normalization, indices)
_setLabels1D(axes, workspace, indices)
else:
(wkspIndex, distribution,
kwargs) = get_wksp_index_dist_and_label(workspace, **kwargs)
(x, y, _, _) = get_spectrum(workspace, wkspIndex, distribution)
_setLabels1D(axes, workspace)
return axes.scatter(x, y, *args, **kwargs)
def test_get_md_data1d(self):
coords, data, err = funcs.get_md_data1d(
self.ws_MD_1d, mantid.api.MDNormalization.NumEventsNormalization)
np.testing.assert_allclose(coords,
np.array([-8, -4, 0, 4, 8]),
atol=1e-10)