def identify(self, options):
"""Identify marker genes in genomes."""
if options.genome_dir:
check_dir_exists(options.genome_dir)
if options.batchfile:
check_file_exists(options.batchfile)
make_sure_path_exists(options.out_dir)
genomes = self._genomes_to_process(options.genome_dir,
options.batchfile,
options.extension)
markers = Markers(options.cpus)
markers.identify(genomes, options.out_dir, options.prefix)
self.logger.info('Done.')
