def test_with_BW(self):
fragments = mdcfragments.get_fragments(self.geom.top)
input_values = (val for val in [""])
option = test_filenames.adrb2_human_xlsx
with mock.patch('builtins.input', lambda *x: next(input_values)):
residx2conlab, lblr = cli._parse_consensus_option(option, "BW",
self.geom.top,
fragments,
return_Labeler=True,
try_web_lookup=False)
self.assertIsInstance(lblr, LabelerBW)
self.assertIsInstance(residx2conlab,list)
def test_with_BW_already_instantiated(self):
fragments = mdcfragments.get_fragments(self.geom.top)
BW = LabelerBW(test_filenames.adrb2_human_xlsx)
input_values = (val for val in [""])
with mock.patch('builtins.input', lambda *x: next(input_values)):
residx2conlab, lblr = cli._parse_consensus_option(BW, "BW",
self.geom.top,
fragments,
return_Labeler=True)
self.assertIsInstance(lblr, LabelerBW)
self.assertEqual(lblr,BW)
self.assertIsInstance(residx2conlab,list)
def test_no_answer(self):
BW = LabelerBW(test_filenames.adrb2_human_xlsx)
residx2conlab, lblr = cli._parse_consensus_option(BW, "BW",
self.geom.top,
[_np.arange(10)],
return_Labeler=True)
def test_empty_w_return(self):
residx2conlab, lblr = cli._parse_consensus_option(None, None, self.geom.top,
None,
return_Labeler=True)
assert lblr is None
assert _pandasunique(residx2conlab)[0] is None
def test_empty(self):
residx2conlab= cli._parse_consensus_option(None, None, self.geom.top,
None,
)
assert _pandasunique(residx2conlab)[0] is None