def do_registration(I0,I1,params,spacing,weight=None,multi_scale=True):
sz = np.array(I0.shape)
if not multi_scale:
so = MO.SimpleSingleScaleRegistration(I0, I1, spacing, sz, params)
else:
so = MO.SimpleMultiScaleRegistration(I0, I1, spacing, sz, params)
so.get_optimizer().set_visualization(True)
so.get_optimizer().set_visualize_step(10)
so.set_light_analysis_on(True)
so.optimizer.set_model(params['model']['registration_model']['type'])
so.optimizer.set_initial_weight_map(weight.cuda(),freeze_weight=True)
so.register()
def test_lddmm_shooting_map_multi_scale(self):
self.params = pars.ParameterDict()
self.params.load_JSON('./json/test_lddmm_shooting_map_multi_scale_config.json')
self.createImage()
mo = MO.SimpleMultiScaleRegistration(self.ISource, self.ITarget, self.spacing, self.sz, self.params)
mo.get_optimizer().set_visualization(False)
mo.register()
# E = [0.07970674], simE = [0.06657108], regE = [0.01313565], optParE = [0.], relF = [0.02088663]
energy = mo.get_energy()
npt.assert_almost_equal(energy[0], 0.07360865, decimal=4 )
npt.assert_almost_equal(energy[1], 0.06016802, decimal=4 )
npt.assert_almost_equal(energy[2], 0.01344063, decimal=4 )
def test_lddmm_shooting_scalar_momentum_map_multi_scale(self):
self.params = pars.ParameterDict()
self.params.load_JSON('./json/test_lddmm_shooting_scalar_momentum_map_multi_scale_config.json')
self.createImage()
mo = MO.SimpleMultiScaleRegistration(self.ISource, self.ITarget, self.spacing, self.sz, self.params)
mo.get_optimizer().set_visualization(False)
mo.register()
# E = [0.08930502], simE = [0.08034889], regE = [0.00895613], optParE = [0.], relF = [0.03883468]
energy = mo.get_energy()
npt.assert_almost_equal(energy[0], 0.04333755, decimal=4 )
npt.assert_almost_equal(energy[1], 0.03237363, decimal=4 )
npt.assert_almost_equal(energy[2], 0.010963925, decimal=4 )
def test_lddmm_shooting_image_multi_scale(self):
self.params = pars.ParameterDict()
self.params.load_JSON('./json/test_lddmm_shooting_image_multi_scale_config.json')
self.createImage()
mo = MO.SimpleMultiScaleRegistration(self.ISource, self.ITarget, self.spacing, self.sz, self.params)
mo.get_optimizer().set_visualization(False)
mo.register()
# E = [0.04338037], similarityE = [0.03070126], regE = [0.01267911], relF = [0.01936091]
energy = mo.get_energy()
npt.assert_almost_equal(energy[0], 0.04338037, decimal=4 )
npt.assert_almost_equal(energy[1], 0.03070126, decimal=4 )
npt.assert_almost_equal(energy[2], 0.01267911, decimal=4 )
def test_lddmm_shooting_scalar_momentum_image_multi_scale(self):
self.params = pars.ParameterDict()
self.params.load_JSON('./json/test_lddmm_shooting_scalar_momentum_image_multi_scale_config.json')
self.createImage()
mo = MO.SimpleMultiScaleRegistration(self.ISource, self.ITarget, self.spacing, self.sz, self.params)
mo.get_optimizer().set_visualization(False)
mo.register()
# E=[ 0.03197587], similarityE=[ 0.02087387], regE=[ 0.01110199], relF=[ 0.00138645]
energy = mo.get_energy()
npt.assert_almost_equal(energy[0], 0.03184246, decimal=4 )
npt.assert_almost_equal(energy[1], 0.0207199, decimal=4 )
npt.assert_almost_equal(energy[2], 0.01112256, decimal=4 )
