def custom(workdir, snakefile, configfile, cores, memory, unlock,
rerun_incomplete, keep_going):
"""A click access point for the workflow module. This is used for creating the command line interface."""
log_params(command='workflow',
snakefile=snakefile,
configfile=configfile,
workdir=workdir,
cores=cores,
memory=memory,
unlock=unlock,
rerun_incomplete=rerun_incomplete,
keep_going=keep_going)
_workflow(workdir, snakefile, configfile, cores, memory, unlock,
rerun_incomplete, keep_going)
def database(workdir, cores, memory, unlock, rerun_incomplete, keep_going,
sensitive):
"""A click access point for the workflow module. This is used for creating the command line interface."""
snakefile = WORKFLOW_DATABASE_ORIGINAL_SNAKEFILE
configfile = WORKFLOW_DATABASE_ORIGINAL_CONFIG
if sensitive:
snakefile = WORKFLOW_DATABASE_SENSITIVE_SNAKEFILE
configfile = WORKFLOW_DATABASE_SENSITIVE_CONFIG
log_params(command='workflow',
workdir=workdir,
cores=cores,
memory=memory,
unlock=unlock,
rerun_incomplete=rerun_incomplete,
keep_going=keep_going,
sensitive=sensitive)
_workflow(workdir, snakefile, configfile, cores, memory, unlock,
rerun_incomplete, keep_going)