def test_format_method_comparison_table(self):
"""Test formatting a methods summary table."""
obs = format_method_comparison_table(self.per_method_results1)
self.assertEqual(obs, exp_method_comparison_table1)
self.assertRaises(ValueError, format_method_comparison_table,
self.per_method_results2)
self.assertRaises(ValueError, format_method_comparison_table,
self.per_method_results3)
def create_real_data_summary_tables(in_dir, workflow):
"""Summarizes the results of the various method runs on real data.
Effect sizes and p-values are collected for each of the tests that were run
and summary tables are created, one for each sampling depth / metric
combination.
These tables will be in TSV format so that they can be easily imported into
Excel for viewing and cleanup for publication.
"""
results = _collate_real_data_results(in_dir, workflow)
for depth_desc, depth_res in results.items():
for metric, metric_res in depth_res.items():
table_rows = format_method_comparison_table(metric_res)
table_name = 'summary_table_%s_%s.txt' % (depth_desc, metric)
with open(join(in_dir, table_name), 'wb') as out_f:
# We use \r so that we can force linebreaks within cells
# when imported into Excel. Not sure if this will work with
# other spreadsheet programs such as Open Office.
tsv_writer = writer(out_f, delimiter='\t', lineterminator='\r')
tsv_writer.writerows(table_rows)
