def test_montage_with_missing_number_missing(test_image_files_montage):
files = test_image_files_montage(missing_fields=[10, 11, 12])
montage, mask, number_missing = \
pre.montage_with_missing(files, order=SPIRAL_CLOCKWISE_RIGHT_25,
re_string=r'.*_[A-P]\d{2}f(\d{2})d0',
re_group=1)
assert number_missing == 3
def test_montage_with_missing_mask(test_image_files_montage):
files = test_image_files_montage(missing_fields=[3, 8])
montage, mask, number_missing = pre.montage_with_missing(files)
expected_mask = np.ones((10, 10), np.bool)
expected_mask[6:8, 4:6] = False
expected_mask[2:4, 6:8] = False
np.testing.assert_array_equal(expected_mask, mask)
def test_montage_with_missing_mask(test_image_files_montage):
files = test_image_files_montage(missing_fields=[3, 8])
montage, mask, number_missing = \
pre.montage_with_missing(files, order=SPIRAL_CLOCKWISE_RIGHT_25,
re_string=r'.*_[A-P]\d{2}f(\d{2})d0',
re_group=1)
expected_mask = np.ones((10, 10), np.bool)
expected_mask[6:8, 4:6] = False
expected_mask[2:4, 6:8] = False
np.testing.assert_array_equal(expected_mask, mask)
def test_montage_with_missing(test_image_files_montage):
files = test_image_files_montage(missing_fields=[20])
montage, mask, number_missing = \
pre.montage_with_missing(files, order=SPIRAL_CLOCKWISE_RIGHT_25,
re_string=r'.*_[A-P]\d{2}f(\d{2})d0',
re_group=1)
expect_montage = np.array([[0, 0, 21, 21, 22, 22, 23, 23, 24, 24],
[0, 0, 21, 21, 22, 22, 23, 23, 24, 24],
[19, 19, 6, 6, 7, 7, 8, 8, 9, 9],
[19, 19, 6, 6, 7, 7, 8, 8, 9, 9],
[18, 18, 5, 5, 0, 0, 1, 1, 10, 10],
[18, 18, 5, 5, 0, 0, 1, 1, 10, 10],
[17, 17, 4, 4, 3, 3, 2, 2, 11, 11],
[17, 17, 4, 4, 3, 3, 2, 2, 11, 11],
[16, 16, 15, 15, 14, 14, 13, 13, 12, 12],
[16, 16, 15, 15, 14, 14, 13, 13, 12, 12]],
np.uint8)
np.testing.assert_array_equal(expect_montage, montage)
def test_montage_with_missing(test_image_files_montage):
files = test_image_files_montage(missing_fields=[20])
montage, mask, number_missing = pre.montage_with_missing(files)
expect_montage = np.array(
[
[0, 0, 21, 21, 22, 22, 23, 23, 24, 24],
[0, 0, 21, 21, 22, 22, 23, 23, 24, 24],
[19, 19, 6, 6, 7, 7, 8, 8, 9, 9],
[19, 19, 6, 6, 7, 7, 8, 8, 9, 9],
[18, 18, 5, 5, 0, 0, 1, 1, 10, 10],
[18, 18, 5, 5, 0, 0, 1, 1, 10, 10],
[17, 17, 4, 4, 3, 3, 2, 2, 11, 11],
[17, 17, 4, 4, 3, 3, 2, 2, 11, 11],
[16, 16, 15, 15, 14, 14, 13, 13, 12, 12],
[16, 16, 15, 15, 14, 14, 13, 13, 12, 12],
],
np.uint8,
)
np.testing.assert_array_equal(expect_montage, montage)
def test_montage_with_missing_number_missing(test_image_files_montage):
files = test_image_files_montage(missing_fields=[10, 11, 12])
montage, mask, number_missing = pre.montage_with_missing(files)
assert number_missing == 3
