def worker(motif):
return sum([
1.0,
-1 * binom_cdf(
self.seed.target_seq.count(motif),
self.seed.len_target_seq - len(motif) + 1,
prob.prob_motif(
motif, self.alphabet, self.markov_order, self.transitions
)
)
])
def test_prob_motif(self):
seq = "AUGC"
alp = ["A", "U", "G", "C"]
t = prob.get_transitions(seq, alp, 1)
self.assertEqual(prob.prob_motif("AU", alp, 2, t), 1.0)
