def continue_job(self, jobid=None, job=None):
""" Resubmit one job with given jobid.
Args:
jobid: jobid of the job to continue
job: (sqlite3.Row) If this is given, jobid is not necessary and is ignored if given
Raises:
EligibilityError if job not eligible to be continued
"""
if job == None:
job = self.select_job(jobid)
eligible, id, msg = self.eligible_to_continue(job)
if not eligible:
raise EligibilityError(id, msg)
wd = os.getcwd()
os.chdir( job["rundir"])
new_jobid = misc.submit(qsubstr=job["qsubstr"])
self.curs.execute("UPDATE jobs SET taskstatus='Continued', modifytime=?, continuation_jobid=? WHERE jobid=?",(int(time.time()),new_jobid,job["jobid"]))
status = job_status_dict(jobid = new_jobid, jobname = job["jobname"], rundir = os.getcwd(), \
jobstatus = "?", auto = job["auto"], qsubstr = job["qsubstr"], nodes = job["nodes"], \
procs = job["procs"], walltime = job["walltime"])
self.add(status)
os.chdir(wd)
def continue_job(self, jobid=None, job=None):
""" Resubmit one job with given jobid.
Args:
jobid: jobid of the job to continue
job: (sqlite3.Row) If this is given, jobid is not necessary and is ignored if given
Raises:
EligibilityError if job not eligible to be continued
"""
if job == None:
job = self.select_job(jobid)
eligible, id, msg = self.eligible_to_continue(job)
if not eligible:
raise EligibilityError(id, msg)
wd = os.getcwd()
os.chdir(job["rundir"])
new_jobid = misc.submit(qsubstr=job["qsubstr"])
self.curs.execute(
"UPDATE jobs SET taskstatus='Continued', modifytime=?, continuation_jobid=? WHERE jobid=?",
(int(time.time()), new_jobid, job["jobid"]))
status = job_status_dict(jobid = new_jobid, jobname = job["jobname"], rundir = os.getcwd(), \
jobstatus = "?", auto = job["auto"], qsubstr = job["qsubstr"], nodes = job["nodes"], \
procs = job["procs"], walltime = job["walltime"])
self.add(status)
os.chdir(wd)
def submit(self, add=True, dbpath=None):
"""Submit this Job using qsub
add: Should this job be added to the JobDB database?
dbpath: Specify a non-default JobDB database
Raises PBSError if error submitting the job.
"""
try:
self.jobID = misc.submit(qsubstr=self.qsub_string())
except PBSError as e:
raise e
if add:
db = jobdb.JobDB(dbpath=dbpath)
status = jobdb.job_status_dict(jobid = self.jobID, jobname = self.name, rundir = os.getcwd(), \
jobstatus = "?", auto = self.auto, qsubstr = self.qsub_string(), \
walltime = misc.seconds(self.walltime), nodes = self.nodes, procs = self.nodes*self.ppn)
db.add(status)
db.close()
def submit(self, add=True, dbpath=None):
"""Submit this Job using qsub
add: Should this job be added to the JobDB database?
dbpath: Specify a non-default JobDB database
Raises PBSError if error submitting the job.
"""
#TODO: fix generic exception catching
try:
self.jobID = misc.submit(qsubstr=self.qsub_string())
except Exception as e:
raise e
if add:
db = jobdb.JobDB(dbpath=dbpath)
status = jobdb.job_status_dict(jobid = self.jobID, jobname = self.name, rundir = os.getcwd(), \
jobstatus = "?", auto = self.auto, qsubstr = self.qsub_string(), \
walltime = misc.seconds(self.walltime), nodes = self.nodes, procs = self.nodes*self.ppn)
db.add(status)
db.close()
