def testSymmetric(self):
tests = reduce(operator.add,
[[(amino_acid_codes[l], amino_acid_codes[r])
for r in range(l + 1)]
for l in range(len(amino_acid_codes))])
for (left, right) in tests:
self.assertEqual(blosum62(left, right), blosum62(right, left))
def testSymmetric(self):
tests = reduce(
operator.add,
[
[ ( amino_acid_codes[ l ], amino_acid_codes[ r ] )
for r in range( l + 1 ) ]
for l in range( len( amino_acid_codes ) )
]
)
for ( left, right ) in tests:
self.assertEqual(
blosum62( left, right ),
blosum62( right, left )
)
def testUnknown(self):
self.assertEqual(blosum62("Q", "B"), 0)
def testSelected(self):
for (left, right, value) in [("A", "C", 0), ("E", "H", 0),
("W", "W", 11), ("F", "P", -4)]:
self.assertEqual(blosum62(left, right), value)
def testUnknown(self):
self.assertEqual( blosum62( "Q", "B" ), 0 )
def testSelected(self):
for ( left, right, value ) in [
( "A", "C", 0 ), ( "E", "H", 0 ), ( "W", "W", 11 ), ( "F", "P", -4 )
]:
self.assertEqual( blosum62( left, right ), value )
