def tunit(verbose):
ConciseMonitor.enable(False)
app = Application(None,"TestTimeSeries",verbose,True)
db = Database(app.dbFilePath)
if verbose: print >>sys.stderr,'TimeSeriesSet.uniqueid for %s is %s' % (db.basename(),TimeSeriesSet.uniqueid(db))
tssids = TimeSeriesSet.seriessetids(db)
if not len(tssids): raise Exception, "there are no TimeSeriesSets in %s" % db.filepath()
tss = TimeSeriesSet(db,tssids[0])
tss.lastreldelta_quintiles()
evs = tss.events()
print "TimeSeries and TimeSeriesSet okay"
print "EventSeries and EventSeriesSet okay"
def main():
clargs = dict(debug=False, norm=True, real=True, dbfile=None, n=None, coeff=False, intensities=False, RFORMAT=False, all=False, listindex=False, seriessetid=None, orphan=False, brief=False);
ai = 1
while ai < len(sys.argv):
arg = sys.argv[ai]
ai += 1
if arg == "-?" or arg == "--help":
Showxy.help()
sys.exit(1)
elif arg == "-A" or arg == "--all":
clargs['all'] = True
clargs['n'] = 1000000
elif arg == "-C" or arg == "--coeff":
clargs['coeff'] = True
elif arg == "-D" or arg == "--debug":
clargs['debug'] = True
elif arg == "-E" or arg == "--export":
clargs['export'] = True
elif arg == "-i" or arg == "--index":
clargs['listindex'] = True
elif arg == "-I" or arg == "--intensities":
clargs['intensities'] = True
elif arg == "-t" or arg == "--tssid":
if ai >= len(sys.argv): raise Exception("%s missing n: try --index to see an index of the database and a list of the tssids" % arg)
clargs['seriessetid'] = int(sys.argv[ai])
ai += 1
elif arg == "-M" or arg == "--monitor":
ConciseMonitor.enable(True)
elif arg == "--n" or arg == "--nonorm":
clargs['norm'] = False
elif arg == "-o" or arg == "--brieforphan":
clargs['orphan'] = True
clargs['brief'] = True
elif arg == "-O" or arg == "--orphan":
clargs['orphan'] = True
clargs['brief'] = False
elif arg == "--RFORMAT":
clargs['RFORMAT'] = True
elif arg == "--r" or arg == "--noreal":
clargs['real'] = False
elif clargs['dbfile'] == None:
clargs['dbfile'] = arg
elif clargs['n'] == None:
clargs['n'] = int(arg)
else:
raise Exception, "unrecognised arg: %s" % arg
showxy = Showxy(**clargs)
def utility():
ConciseMonitor.enable(False)
brief = False
debug = False
update = False
default_dbfile = Application(None,"CoefficientMatrix Utility",False,True).dbFilePath
dbfiles = [ ]
for arg in sys.argv[1:]:
if arg == '--help' or arg == '-?':
print '%s: display coefficient matrix metrics in one or more BC database files, optionally installing post-import coefficient matrices as well' % sys.argv[0]
print
print 'use: %s [ option ]... [ databasefile ]...'
print
print ' databasefile path to a BC databasefile; default is the dbfile found in .bc_profile:'
print ' %s' % default_dbfile
print
print 'options:'
print ' -? --help print the help information and exit'
print ' -D --debug turn on debugging'
print ' -B --brief brief display'
print ' -M --monitor turn on resource monitoring'
print ' -U --update update databases with any missing post-import coefficient matrices'
sys.exit(1)
elif arg == '-B' or arg == '--brief':
brief = True
elif arg == '-D' or arg == '--debug':
debug = True
elif arg == '-M' or arg == '--monitor':
ConciseMonitor.enable(True)
elif arg == '-U' or arg == '--update':
update = True
elif arg == '-D' or arg == '--debug':
debug = True
else:
Database(arg) # raise exception now if not a valid db file
dbfiles.append(arg)
if not dbfiles:
dbfiles.append(default_dbfile)
for dbfile in dbfiles:
resuse = ConciseMonitor()
db = Database(dbfile)
report_coefficients(db,brief,update)
resuse.report('%s finished' % db.basename())
#!/usr/bin/env python
import re,sys
from application import *
from timeseries import *
from coefficient import * # problems arise if you import coefficient before timeseries :(
from monitor import ConciseMonitor
from util import *
ConciseMonitor.enable(False)
class Showxy:
DEFAULT_DATAPOINTS = TimeSeries.maxStringisedDatapoints
def __init__(self,**args):
debugpatt = re.compile('debug_')
app = Application(None,"Showxy",args['debug'],False)
if args['debug']:
for k in args.keys():
if debugpatt.search(k):
app.params.params[k] = True
dbfile = args['dbfile'] or app.dbFilePath
db = args['db'] = Database(dbfile)
tssids = TimeSeriesSet.seriessetids(db)
index = TimeSeriesSet.index(db)
